PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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5J3F	NMR solution structure of [Rp, Rp]-PT dsDNA 分子名称: DNA (5'-D(*CP*GP*(RSG)P*CP*CP*GP*CP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*GP*CP*GP*(RSG)P*CP*CP*G)-3') 著者 Lan, W, Hu, Z, Cao, C. 登録日 2016-03-30 公開日 2016-11-16 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural investigation into physiological DNA phosphorothioate modification Sci Rep, 6, 2016
7K19	CryoEM structure of DNA-PK catalytic subunit complexed with DNA (Complex I) 分子名称: DNA (5'-D(*AP*AP*GP*CP*AP*GP*TP*AP*GP*AP*GP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*TP*CP*TP*AP*CP*TP*GP*CP*TP*TP*CP*GP*AP*TP*AP*TP*CP*G)-3'), DNA-dependent protein kinase catalytic subunit 著者 Chen, X, Gellert, M, Yang, W. 登録日 2020-09-07 公開日 2021-01-06 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structure of an activated DNA-PK and its implications for NHEJ. Mol.Cell, 81, 2021
7K1B	CryoEM structure of DNA-PK catalytic subunit complexed with DNA (Complex II) 分子名称: DNA (5'-D(P*AP*AP*GP*CP*AP*GP*TP*AP*GP*AP*GP*CP*AP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*TP*GP*CP*TP*CP*TP*AP*CP*TP*GP*CP*TP*TP*CP*GP*AP*TP*AP*TP*CP*G)-3'), DNA-dependent protein kinase catalytic subunit 著者 Chen, X, Gellert, M, Yang, W. 登録日 2020-09-07 公開日 2021-01-06 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structure of an activated DNA-PK and its implications for NHEJ. Mol.Cell, 81, 2021
5J3I	NMR solution structure of [Sp, Sp]-PT dsDNA 分子名称: DNA (5'-D(*CP*GP*(SSG)P*CP*CP*GP*CP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*GP*CP*GP*(SSG)P*CP*CP*G)-3') 著者 Lan, W, Hu, Z, Cao, C. 登録日 2016-03-30 公開日 2016-11-16 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural investigation into physiological DNA phosphorothioate modification Sci Rep, 6, 2016
3MLO	DNA binding domain of Early B-cell Factor 1 (Ebf1) bound to DNA (Crystal form I) 分子名称: DNA (5'-D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP*AP*AP*G)-3'), Transcription factor COE1, ZINC ION 著者 Treiber, N, Treiber, T, Zocher, G, Grosschedl, R. 登録日 2010-04-17 公開日 2010-12-01 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins Genes Dev., 24, 2010
3MLN	DNA binding domain of Early B-cell Factor 1 (Ebf1) bound to DNA (crystal form II) 分子名称: DNA (5'-D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP*AP*AP*G)-3'), Transcription factor COE1, ZINC ION 著者 Treiber, N, Treiber, T, Zocher, G, Grosschedl, R. 登録日 2010-04-17 公開日 2010-12-01 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins Genes Dev., 24, 2010
5J3G	Solution NMR structure of PT-free dsDNA from Streptomyces lividans 分子名称: DNA (5'-D(*CP*GP*GP*CP*CP*GP*CP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*GP*CP*GP*GP*CP*CP*G)-3') 著者 Lan, W, Cao, C. 登録日 2016-03-30 公開日 2016-06-22 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural investigation into physiological DNA phosphorothioate modification Sci Rep, 6, 2016
7K10	CryoEM structure of activated-form FATKIN domain of DNA-PK 分子名称: DNA-dependent protein kinase catalytic subunit 著者 Chen, X, Gellert, M, Yang, W. 登録日 2020-09-06 公開日 2021-01-06 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of an activated DNA-PK and its implications for NHEJ. Mol.Cell, 81, 2021
2UUG	ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE:INHIBITOR COMPLEX WITH H187D MUTANT UDG AND WILD-TYPE UGI 分子名称: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR 著者 Putnam, C.D, Arvai, A.S, Mol, C.D, Tainer, J.A. 登録日 1998-10-31 公開日 1999-03-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase J.Mol.Biol., 287, 1999
4EQ5	DNA ligase from the archaeon Thermococcus sibiricus 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase 著者 Petrova, T, Bezsudnova, E.Y, Dorokhov, B.D, Slutskaya, E.S, Polyakov, K.M, Dorovatovskiy, P.V, Ravin, N.V, Skryabin, K.G, Kovalchuk, M.V, Popov, V.O. 登録日 2012-04-18 公開日 2012-05-09 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Expression, purification, crystallization and preliminary crystallographic analysis of a thermostable DNA ligase from the archaeon Thermococcus sibiricus. Acta Crystallogr.,Sect.F, 68, 2012
1UUG	ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE:INHIBITOR COMPLEX WITH WILD-TYPE UDG AND WILD-TYPE UGI 分子名称: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR 著者 Mol, C.D, Arvai, A.S, Putnam, C.D, Tainer, J.A. 登録日 1998-10-31 公開日 1999-03-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase J.Mol.Biol., 287, 1999
8VDT	DNA Ligase 1 with nick DNA 3'rA:T 分子名称: DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*TP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA ligase 1, DNA/RNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-R(P*A)-D(P*GP*TP*CP*GP*GP*AP*C)-3'), ... 著者 KanalElamparithi, B, Gulkis, M, Caglayan, M. 登録日 2023-12-17 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.78 Å) 主引用文献 Structures of LIG1 provide a mechanistic basis for understanding a lack of sugar discrimination against a ribonucleotide at the 3'-end of nick DNA. J.Biol.Chem., 300, 2024
8VDS	DNA Ligase 1 with nick DNA 3'rG:C 分子名称: DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA ligase 1, DNA/RNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-R(P*G)-D(P*GP*TP*CP*GP*GP*AP*C)-3') 著者 KanalElamparithi, B, Gulkis, M, Caglayan, M. 登録日 2023-12-17 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Structures of LIG1 provide a mechanistic basis for understanding a lack of sugar discrimination against a ribonucleotide at the 3'-end of nick DNA. J.Biol.Chem., 300, 2024
7K17	Re-refined crystal structure of DNA-dependent protein kinase catalytic subunit complexed with Ku80 C-terminal helix 分子名称: DNA-dependent protein kinase catalytic subunit, X-ray repair cross-complementing protein 5 著者 Chen, X, Gellert, M, Yang, W. 登録日 2020-09-07 公開日 2021-01-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (4.3 Å) 主引用文献 Structure of an activated DNA-PK and its implications for NHEJ. Mol.Cell, 81, 2021
6DBL	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs 分子名称: CALCIUM ION, Molecule name: Forward strand of 12-RSS substrate DNA, Molecule name: Forward strand of 23-RSS substrate DNA, ... 著者 Wu, H, Liao, M, Ru, H, Mi, W. 登録日 2018-05-03 公開日 2018-08-01 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (5.001 Å) 主引用文献 DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
3W1O	Neisseria DNA mimic protein DMP12 分子名称: DNA mimic protein DMP12, MAGNESIUM ION 著者 Wang, H.C, Ko, T.P, Wu, M.L, Wang, A.H.J. 登録日 2012-11-19 公開日 2013-04-10 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Neisseria conserved hypothetical protein DMP12 is a DNA mimic that binds to histone-like HU protein Nucleic Acids Res., 41, 2013
6DBQ	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs 分子名称: CALCIUM ION, Molecule name: Forward strand of 12-RSS substrate DNA, Molecule name: Forward strand of 23-RSS substrate DNA, ... 著者 Wu, H, Liao, M, Ru, H, Mi, W. 登録日 2018-05-03 公開日 2018-08-01 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.22 Å) 主引用文献 DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6DBT	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs 分子名称: CALCIUM ION, Forward strand of 12-RSS substrate DNA, Forward strand of 23-RSS substrate DNA, ... 著者 Wu, H, Liao, M, Ru, H, Mi, W. 登録日 2018-05-03 公開日 2018-08-01 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
7CC9	Sulfur binding domain of SprMcrA complexed with phosphorothioated DNA 分子名称: ACETATE ION, DNA (5'-D(*GP*GP*CP*GP*GS*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*CP*GP*CP*C)-3'), ... 著者 Yu, H, Zhao, G, Gan, J, Liu, G, Wu, G, He, X. 登録日 2020-06-16 公開日 2020-07-08 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.063 Å) 主引用文献 DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses. Nucleic Acids Res., 48, 2020
5WFY	Crystal structure of DNA-binding domain of the bacteriophage T4 ligase 分子名称: DNA ligase, GLYCEROL 著者 Shi, K, Aihara, H. 登録日 2017-07-13 公開日 2018-09-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction. Nucleic Acids Res., 46, 2018
6DBU	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs 分子名称: CALCIUM ION, Forward strand RSS substrate DNA, Recombination activating gene 1 - MBP chimera, ... 著者 Wu, H, Liao, M, Ru, H, Mi, W. 登録日 2018-05-03 公開日 2018-08-01 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6DBV	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs 分子名称: CALCIUM ION, Forward strand of 12-RSS substrate DNA, Forward strand of 23-RSS substrate DNA, ... 著者 Wu, H, Liao, M, Ru, H, Mi, W. 登録日 2018-05-03 公開日 2018-08-01 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (4.291 Å) 主引用文献 DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6DBO	Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs 分子名称: CALCIUM ION, Forward strand of substrate RSS DNA, Recombination activating gene 1 - MBP chimera, ... 著者 Wu, H, Liao, M, Ru, H, Mi, W. 登録日 2018-05-03 公開日 2018-08-01 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 DNA melting initiates the RAG catalytic pathway. Nat. Struct. Mol. Biol., 25, 2018
6W0Q	APE1 endonuclease product complex D148E 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ... 著者 Freudenthal, B.D, Whitaker, A.M. 登録日 2020-03-02 公開日 2020-06-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Molecular and structural characterization of disease-associated APE1 polymorphisms. DNA Repair (Amst.), 91-92, 2020
6W43	APE1 AP-endonuclease product complex R237C 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Freudenthal, B.D, Whitaker, A.M. 登録日 2020-03-10 公開日 2020-06-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Molecular and structural characterization of disease-associated APE1 polymorphisms. DNA Repair (Amst.), 91-92, 2020

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