PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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8TIX	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 5' terminal phosphates and crosslinked with EDC. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*G)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIR	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 5' terminal phosphates. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*G)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIU	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 2 sticky base overhangs and 3' terminal phosphates. 分子名称: DNA (5'-D(CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-3')|, DNA (5'-D(GP*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*A)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIP	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 5' terminal phosphates. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3')|, DNA (5'-D(A*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*GP*G)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Slaughter, C.K, Shrestha, R, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIS	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 3' terminal phosphates. 分子名称: DNA (5'-D(GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*GP*A)-3'), DNA(5'-D(CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-')|, MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIY	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 1 sticky bases and 3' terminal phosphates and crosslinked with EDC. 分子名称: DNA (5'-D(GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*GP*A)-3'), DNA(5'-D(CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-')|, MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIW	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 3' terminal phosphates and crosslinked with EDC. 分子名称: DNA (5'-D(*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-3', DNA (5'-D(*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*GP*GP*A)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIV	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 5' terminal phosphates and crosslinked with EDC. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3')|, DNA (5'-D(A*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*GP*G)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TJ1	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with 2 sticky base overhangs and 3' terminal phosphates and crosslinked with EDC. 分子名称: DNA (5'-D(CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-3')|, DNA (5'-D(GP*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*A)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Shrestha, R, Slaughter, C.K, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
8TIQ	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence with blunt ends and 3' terminal phosphates. 分子名称: DNA (5'-D(*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-3', DNA (5'-D(*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*GP*GP*A)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Shields, E.T, Slaughter, C.K, Shrestha, R, Snow, C.D. 登録日 2023-07-20 公開日 2023-08-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Tuning Chemical DNA Ligation within DNA Crystals and Protein-DNA Cocrystals. Acs Nanosci Au, 4, 2024
6BSF	Human GR (418-507) in complex with monomeric DNA binding site 分子名称: DNA (5'-D(P*AP*AP*GP*CP*TP*AP*GP*TP*AP*CP*AP*TP*TP*TP*GP*C)-3'), DNA (5'-D(P*TP*GP*CP*AP*AP*AP*TP*GP*TP*AP*CP*TP*AP*GP*CP*T)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A. 登録日 2017-12-02 公開日 2018-12-05 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry To Be Published
3VJZ	Crystal structure of the DNA mimic protein DMP19 分子名称: Putative uncharacterized protein 著者 Wang, H.-C, Ko, T.-P, Wang, A.H.-J. 登録日 2011-11-01 公開日 2012-03-14 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Neisseria conserved protein DMP19 is a DNA mimic protein that prevents DNA binding to a hypothetical nitrogen-response transcription factor Nucleic Acids Res., 2012
8J54	Crystal structure of RXR/DR2 complex 分子名称: DNA (5'-D(*CP*AP*TP*GP*AP*CP*CP*TP*AP*CP*TP*GP*AP*CP*CP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*GP*GP*TP*CP*AP*GP*TP*AP*GP*GP*TP*CP*AP*TP*G)-3'), Retinoic acid receptor RXR, ... 著者 Chen, Y, Jiang, L. 登録日 2023-04-21 公開日 2024-01-17 最終更新日 2024-04-17 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Structural characterization of the DNA binding mechanism of retinoic acid-related orphan receptor gamma. Structure, 32, 2024
2CQR	Solution structure of RSGI RUH-043, a myb DNA-binding domain in human cDNA 分子名称: DnaJ homolog subfamily C member 1 著者 Doi-Katayama, Y, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-05-20 公開日 2005-11-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of RSGI RUH-043, a myb DNA-binding domain in human cDNA To be Published
2CQQ	Solution Structure of RSGI RUH-037, a myb DNA-binding domain in human cDNA 分子名称: DnaJ homolog subfamily C member 1 著者 Doi-Katayama, Y, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-05-20 公開日 2005-11-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution Structure of RSGI RUH-037, a myb DNA-binding domain in human cDNA To be Published
7SUV	APE1 exonuclease substrate complex with 8oxoG opposite A 分子名称: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(8OG))-3'), DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'), ... 著者 Whitaker, A.W, Freudenthal, B.D. 登録日 2021-11-18 公開日 2022-09-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Processing oxidatively damaged bases at DNA strand breaks by APE1. Nucleic Acids Res., 50, 2022
7SVB	APE1 exonuclease substrate complex with 8oxoG opposite C 分子名称: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(8OG))-3'), DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'), ... 著者 Whitaker, A.W, Freudenthal, B.D. 登録日 2021-11-18 公開日 2022-09-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Processing oxidatively damaged bases at DNA strand breaks by APE1. Nucleic Acids Res., 50, 2022
2LTT	Solution NMR Structure of YdbC:dT19G1 complex. Northeast Structural Genomics Consortium (NESG) Target KR150 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Putative uncharacterized protein ydbC 著者 Rossi, P, Barbieri, C.M, Aramini, J.A, Bini, E, Lee, H, Janjua, H, Ciccosanti, C, Wang, H, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2012-05-31 公開日 2012-06-20 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome. Nucleic Acids Res., 41, 2013
8SRO	FoxP3 tetramer on TTTG repeats 分子名称: DNA 72-mer, Forkhead box protein P3 著者 Leng, F, Hur, S. 登録日 2023-05-05 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 FOXP3 recognizes microsatellites and bridges DNA through multimerization. Nature, 624, 2023
8SRP	FoxP3 forms Ladder-like multimer to bridge TTTG repeats 分子名称: DNA 72-mer, Forkhead box protein P3 著者 Leng, F, Hur, S. 登録日 2023-05-05 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 FOXP3 recognizes microsatellites and bridges DNA through multimerization. Nature, 624, 2023
1ECU	SOLUTION STRUCTURE OF E2F BINDING DNA FRAGMENT GCGCGAAAC-T-GTTTCGCGC 分子名称: DNA (5'-D(*GP*CP*GP*CP*GP*AP*AP*AP*CP*TP*GP*TP*TP*TP*CP*GP*CP*GP*C)-3') 著者 Wu, J.H, Chang, C, Pei, J.M, Xiao, Q, Shi, Y.Y. 登録日 2000-01-26 公開日 2000-02-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of E2F binding DNA fragment GCGCGAAAC-T-GTTTCGCGC studied by Molecular Dynamics Simulation and Two Dimensional NMR experiment to be published, 2000
3D1F	Crystal structure of E. coli sliding clamp (beta) bound to a polymerase III peptide 分子名称: 2-[3,6-bis(dimethylamino)xanthen-9-yl]-5-methanoyl-benzoate, DI(HYDROXYETHYL)ETHER, DNA polymerase III subunit beta, ... 著者 Georgescu, R.E, Yurieva, O, Seung-Sup, K, Kuriyan, J, Kong, X.-P, O'Donnell, M. 登録日 2008-05-05 公開日 2008-07-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp. Proc.Natl.Acad.Sci.Usa, 105, 2008
4RKH	Structure of the MSL2 CXC domain bound with a specific MRE sequence 分子名称: DNA (5'-D(*AP*TP*CP*CP*AP*TP*CP*TP*CP*GP*CP*TP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*AP*GP*CP*GP*AP*GP*AP*TP*GP*GP*AP*T)-3'), E3 ubiquitin-protein ligase msl-2, ... 著者 Zheng, S, Ye, K. 登録日 2014-10-13 公開日 2015-01-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation. Genes Dev., 28, 2014
6BQU	Human GR (418-507) in complex with monomeric DNA binding site 分子名称: DNA (5'-D(P*AP*AP*GP*CP*TP*AP*GP*TP*AP*CP*AP*TP*TP*TP*GP*C)-3'), DNA (5'-D(P*TP*GP*CP*AP*AP*AP*TP*GP*TP*AP*CP*TP*AP*GP*CP*T)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A. 登録日 2017-11-28 公開日 2018-12-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry To Be Published
6LZJ	Aquifex aeolicus MutL ATPase domain complexed with AMPPCP 分子名称: DNA mismatch repair protein MutL, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER 著者 Fukui, K, Izuhara, K, Yano, T. 登録日 2020-02-19 公開日 2020-07-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.72835565 Å) 主引用文献 A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL. J.Biol.Chem., 295, 2020

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