Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NWH
DownloadVisualize
BU of 5nwh by Molmil
Potent inhibitors of NUDT5 silence hormone signaling in breast cancer
分子名称: 7-[[5-(3,4-dichlorophenyl)-1,3,4-oxadiazol-2-yl]methyl]-1,3-dimethyl-8-piperazin-1-yl-purine-2,6-dione, ADP-sugar pyrophosphatase
著者Carter, M, Stenmark, P.
登録日2017-05-06
公開日2018-04-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Targeted NUDT5 inhibitors block hormone signaling in breast cancer cells.
Nat Commun, 9, 2018
6SCX
DownloadVisualize
BU of 6scx by Molmil
Crystal structure of the catalytic domain of human NUDT12 in complex with 7-methyl-guanosine-5'-triphosphate
分子名称: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, CADMIUM ION, Peroxisomal NADH pyrophosphatase NUDT12
著者McCarthy, A.A, Chen, K.M, Wu, H, Li, L, Homolka, D, Gos, P, Fleury-Olela, F, Pillai, R.S.
登録日2019-07-25
公開日2020-01-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献Decapping Enzyme NUDT12 Partners with BLMH for Cytoplasmic Surveillance of NAD-Capped RNAs.
Cell Rep, 29, 2019
4ZBP
DownloadVisualize
BU of 4zbp by Molmil
Crystal structure of the AMPCPR-bound AtNUDT7
分子名称: ALPHA-BETA METHYLENE ADP-RIBOSE, Nudix hydrolase 7, SULFATE ION
著者Tang, Q, Liu, C, Zhong, C, Ding, J.
登録日2015-04-15
公開日2015-09-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structures of Arabidopsis thaliana Nudix Hydrolase NUDT7 Reveal a Previously Unobserved Conformation.
Mol Plant, 8, 2015
4ZB3
DownloadVisualize
BU of 4zb3 by Molmil
Crystal structure of the apo AtNUDT7
分子名称: Nudix hydrolase 7, SULFATE ION
著者Tang, Q, Liu, C, Zhong, C, Ding, J.
登録日2015-04-14
公開日2015-09-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structures of Arabidopsis thaliana Nudix Hydrolase NUDT7 Reveal a Previously Unobserved Conformation.
Mol Plant, 8, 2015
7E44
DownloadVisualize
BU of 7e44 by Molmil
Crystal structure of NudC complexed with dpCoA
分子名称: DEPHOSPHO COENZYME A, NADH pyrophosphatase, ZINC ION
著者Zhou, W, Guan, Z.Y, Yin, P, Zhang, D.L.
登録日2021-02-10
公開日2021-07-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insights into dpCoA-RNA decapping by NudC.
Rna Biol., 18, 2021
6NCH
DownloadVisualize
BU of 6nch by Molmil
Crystal structure of CDP-Chase: Raster data collection
分子名称: D-ribose, PHOSPHATE ION, Phosphohydrolase (MutT/nudix family protein), ...
著者Miller, M.S, Shi, W, Gabelli, S.B.
登録日2018-12-11
公開日2019-02-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Getting the Most Out of Your Crystals: Data Collection at the New High-Flux, Microfocus MX Beamlines at NSLS-II.
Molecules, 24, 2019
6O3P
DownloadVisualize
BU of 6o3p by Molmil
Crystal structure of the catalytic domain of mouse Nudt12 in complex with AMP and 3 Mg2+ ions
分子名称: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, Peroxisomal NADH pyrophosphatase NUDT12, ...
著者Tong, L, Wu, Y.
登録日2019-02-27
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and mechanistic basis of mammalian Nudt12 RNA deNADding.
Nat.Chem.Biol., 15, 2019
6AM0
DownloadVisualize
BU of 6am0 by Molmil
Crystal structure of K. lactis Edc1-Dcp1-Dcp2-Edc3 decapping complex with synthetic cap substrate analog
分子名称: KLLA0A01474p, KLLA0A11308p, KLLA0E01827p, ...
著者Mugridge, J.S, Gross, J.D.
登録日2017-08-08
公開日2018-03-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Structure of the activated Edc1-Dcp1-Dcp2-Edc3 mRNA decapping complex with substrate analog poised for catalysis.
Nat Commun, 9, 2018
5ISY
DownloadVisualize
BU of 5isy by Molmil
Crystal structure of Nudix family protein with NAD
分子名称: NADH pyrophosphatase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
著者Zhang, D, Guan, Z, Zou, T, Yin, P.
登録日2016-03-15
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.354 Å)
主引用文献Structural basis of prokaryotic NAD-RNA decapping by NudC
Cell Res., 26, 2016
5IW5
DownloadVisualize
BU of 5iw5 by Molmil
Crystal structure of E. coli NudC in complex with NMN
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NADH pyrophosphatase, ZINC ION
著者Li, S, Du, J, Patel, D.J.
登録日2016-03-22
公開日2016-07-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure and function of the bacterial decapping enzyme NudC
Nat.Chem.Biol., 12, 2016
5J3T
DownloadVisualize
BU of 5j3t by Molmil
Crystal structure of S. pombe Dcp2:Dcp1:Edc1 mRNA decapping complex
分子名称: Edc1, FORMIC ACID, MAGNESIUM ION, ...
著者Valkov, E, Muthukumar, S, Chang, C.T, Jonas, S, Weichenrieder, O, Izaurralde, E.
登録日2016-03-31
公開日2016-05-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.
Nat.Struct.Mol.Biol., 23, 2016
5J3Y
DownloadVisualize
BU of 5j3y by Molmil
Crystal structure of S. pombe Dcp2:Dcp1 mRNA decapping complex
分子名称: mRNA decapping complex subunit 2, mRNA-decapping enzyme subunit 1
著者Valkov, E, Muthukumar, S, Chang, C.T, Jonas, S, Weichenrieder, O, Izaurralde, E.
登録日2016-03-31
公開日2016-05-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.288 Å)
主引用文献Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.
Nat.Struct.Mol.Biol., 23, 2016
6M65
DownloadVisualize
BU of 6m65 by Molmil
Crystal structure of Mycobacterium smegmatis MutT1 in complex with GMPPNP (GDP)
分子名称: 1,2-ETHANEDIOL, GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, ...
著者Raj, P, Karthik, S, Arif, S.M, Varshney, U, Vijayan, M.
登録日2020-03-13
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Plasticity, ligand conformation and enzyme action of Mycobacterium smegmatis MutT1.
Acta Crystallogr D Struct Biol, 76, 2020
6M69
DownloadVisualize
BU of 6m69 by Molmil
Crystal structure of Mycobacterium smegmatis MutT1 in complex with GMPPCP (GDP)
分子名称: 1,2-ETHANEDIOL, GUANOSINE-5'-DIPHOSPHATE, Hydrolase, ...
著者Raj, P, Karthik, S, Arif, S.M, Varshney, U, Vijayan, M.
登録日2020-03-13
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Plasticity, ligand conformation and enzyme action of Mycobacterium smegmatis MutT1.
Acta Crystallogr D Struct Biol, 76, 2020
6M6Y
DownloadVisualize
BU of 6m6y by Molmil
Crystal structure of Mycobacterium smegmatis MutT1 in complex with 8-oxo-dGTP
分子名称: 1,2-ETHANEDIOL, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Hydrolase, ...
著者Raj, P, Karthik, S, Arif, S.M, Varshney, U, Vijayan, M.
登録日2020-03-16
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Plasticity, ligand conformation and enzyme action of Mycobacterium smegmatis MutT1.
Acta Crystallogr D Struct Biol, 76, 2020
6M72
DownloadVisualize
BU of 6m72 by Molmil
Crystal structure of Mycobacterium smegmatis MutT1 in complex with 8-oxo-dGDP
分子名称: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate), Hydrolase, NUDIX family protein, ...
著者Raj, P, Karthik, S, Arif, S.M, Varshney, U, Vijayan, M.
登録日2020-03-16
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Plasticity, ligand conformation and enzyme action of Mycobacterium smegmatis MutT1.
Acta Crystallogr D Struct Biol, 76, 2020
5IW4
DownloadVisualize
BU of 5iw4 by Molmil
Crystal structure of E. coli NudC in complex with NAD
分子名称: NADH pyrophosphatase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ZINC ION
著者Li, S, Du, J, Patel, D.J.
登録日2016-03-22
公開日2016-07-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure and function of the bacterial decapping enzyme NudC.
Nat.Chem.Biol., 12, 2016
6D1V
DownloadVisualize
BU of 6d1v by Molmil
Crystal structure of E. coli RppH-DapF complex, monomer bound to RNA
分子名称: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ...
著者Gao, A, Serganov, A.
登録日2018-04-12
公開日2018-05-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6CO7
DownloadVisualize
BU of 6co7 by Molmil
Structure of the nvTRPM2 channel in complex with Ca2+
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Zhang, Z, Toth, B, Szollosi, A, Chen, J, Csanady, L.
登録日2018-03-12
公開日2018-05-16
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Structure of a TRPM2 channel in complex with Ca2+explains unique gating regulation.
Elife, 7, 2018
5KQ4
DownloadVisualize
BU of 5kq4 by Molmil
Crystal structure of S. pombe Dcp1/Dcp2 in complex with H. sapiens PNRC2 and synthetic cap analog
分子名称: Proline-rich nuclear receptor coactivator 2, [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate, mRNA decapping complex subunit 2, ...
著者Mugridge, J.S, Ziemniak, M, Jemielity, J, Gross, J.D.
登録日2016-07-05
公開日2016-10-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Structural basis of mRNA-cap recognition by Dcp1-Dcp2.
Nat.Struct.Mol.Biol., 23, 2016
6D13
DownloadVisualize
BU of 6d13 by Molmil
Crystal structure of E.coli RppH-DapF complex
分子名称: CHLORIDE ION, Diaminopimelate epimerase, IODIDE ION, ...
著者Gao, A, Serganov, A.
登録日2018-04-11
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6D1Q
DownloadVisualize
BU of 6d1q by Molmil
Crystal structure of E. coli RppH-DapF complex, monomer
分子名称: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ...
著者Gao, A, Serganov, A.
登録日2018-04-12
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6NCI
DownloadVisualize
BU of 6nci by Molmil
Crystal structure of CDP-Chase: Vector data collection
分子名称: D-ribose, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
著者Miller, M.S, Shi, W, Gabelli, S.B.
登録日2018-12-11
公開日2019-02-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Getting the Most Out of Your Crystals: Data Collection at the New High-Flux, Microfocus MX Beamlines at NSLS-II.
Molecules, 24, 2019
3Q4I
DownloadVisualize
BU of 3q4i by Molmil
Crystal structure of CDP-Chase in complex with Gd3+
分子名称: GADOLINIUM ION, Phosphohydrolase (MutT/nudix family protein)
著者Duong-Ly, K.C, Gabelli, S.B, Amzel, L.M.
登録日2010-12-23
公開日2011-07-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Nudix Hydrolase CDP-Chase, a CDP-Choline Pyrophosphatase, Is an Asymmetric Dimer with Two Distinct Enzymatic Activities.
J.Bacteriol., 193, 2011
3Q1P
DownloadVisualize
BU of 3q1p by Molmil
Crystal structure of CDP-Chase
分子名称: Phosphohydrolase (MutT/nudix family protein), SULFATE ION
著者Duong-Ly, K.C, Gabelli, S.B, Amzel, L.M.
登録日2010-12-17
公開日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Nudix Hydrolase CDP-Chase, a CDP-Choline Pyrophosphatase, Is an Asymmetric Dimer with Two Distinct Enzymatic Activities.
J.Bacteriol., 193, 2011

226262

件を2024-10-16に公開中

PDB statisticsPDBj update infoContact PDBjnumon