PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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6KF9	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase 分子名称: DNA (27-MER), DNA (5'-D(P*TP*CP*GP*GP*TP*AP*AP*TP*CP*AP*CP*GP*CP*TP*CP*C)-3'), DNA-directed RNA polymerase subunit, ... 著者 Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. 登録日 2019-07-07 公開日 2020-07-01 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.79 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
8XYC	Ternary structure of dVemCas12e-sgRNA-dsDNA 分子名称: DNA (35-MER), RNA (147-MER), dVemCas12e 著者 Zhang, S, Lin, S, Liu, J.J.G. 登録日 2024-01-19 公開日 2024-10-23 実験手法 ELECTRON MICROSCOPY (2.51 Å) 主引用文献 Ternary structure of dVemCas12e-sgRNA-dsDNA To Be Published
6O19	Crystal Structure of Pho7 complex with pho1 promoter site 2 分子名称: DNA (5'-D(*GP*TP*TP*TP*TP*TP*AP*AP*TP*TP*TP*CP*CP*GP*AP*AP*TP*AP*AP*T)-3'), DNA (5'-D(*TP*TP*AP*TP*TP*CP*GP*GP*AP*AP*AP*TP*TP*AP*AP*AP*AP*AP*CP*A)-3'), Transcription factor Pho7, ... 著者 Garg, A, Goldgur, Y, Shuman, S. 登録日 2019-02-18 公開日 2019-04-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.596 Å) 主引用文献 Structure of Fission Yeast Transcription Factor Pho7 Bound topho1Promoter DNA and Effect of Pho7 Mutations on DNA Binding and Phosphate Homeostasis. Mol.Cell.Biol., 39, 2019
5LXU	Structure of the DNA-binding domain of LUX ARRHYTHMO 分子名称: DNA (5'-D(*AP*TP*GP*CP*GP*TP*AP*TP*CP*TP*TP*AP*GP*AP*TP*AP*CP*GP*CP*A)-3'), Transcription factor LUX 著者 Zubieta, C, Nanao, M.H. 登録日 2016-09-22 公開日 2017-10-25 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Structure of the DNA-binding domain of LUX ARRHYTHMO To Be Published
9GPJ	Structure of UP1 S4DS6D phosphomimetic mutant in complex with human telomeric repeat DNA 分子名称: DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed 著者 Dunnett, L, Prischi, F. 登録日 2024-09-08 公開日 2024-09-25 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Structure of UP1 S4DS6D phosphomimetic mutant in complex with human telomeric repeat DNA To Be Published
7QHS	S. cerevisiae CMGE nucleating origin DNA melting 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Lewis, J.S, Sousa, J.S, Costa, A. 登録日 2021-12-14 公開日 2022-06-15 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Mechanism of replication origin melting nucleated by CMG helicase assembly. Nature, 606, 2022
1HW2	FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ECHERICHIA COLI 分子名称: 5'-D(*CP*GP*AP*TP*CP*TP*GP*GP*TP*CP*CP*GP*AP*CP*CP*AP*GP*AP*TP*GP*CP*T)-3', 5'-D(*G*CP*AP*TP*CP*TP*GP*GP*TP*CP*GP*GP*AP*CP*CP*AP*GP*AP*TP*CP*GP*A)-3', FATTY ACID METABOLISM REGULATOR PROTEIN, ... 著者 Xu, Y, Heath, R.J, Li, Z, Rock, C.O, White, S.W. 登録日 2001-01-09 公開日 2001-01-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli. J.Biol.Chem., 276, 2001
1DBQ	DNA-BINDING REGULATORY PROTEIN 分子名称: MAGNESIUM ION, PURINE REPRESSOR 著者 Schumacher, M.A, Choi, K.Y, Lu, F, Zalkin, H, Brennan, R.G. 登録日 1996-02-13 公開日 1996-12-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mechanism of corepressor-mediated specific DNA binding by the purine repressor. Cell(Cambridge,Mass.), 83, 1995
4G82	Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element 分子名称: DNA (5'-D(P*GP*AP*AP*CP*AP*TP*GP*TP*TP*C)-3'), Tumor protein p73, ZINC ION 著者 Ethayathulla, A.S, Viadiu, H. 登録日 2012-07-20 公開日 2013-01-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element J.Biol.Chem., 2013
4YMM	Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA 分子名称: DNA 10-mer (up-primer), DNA 16-mer (template), DNA 5-mer (dn-primer), ... 著者 Lee, S, Koag, M.-C. 登録日 2015-03-06 公開日 2016-03-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.199 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA To Be Published
7B0H	TgoT_6G12 Ternary complex 分子名称: DNA (5'-D(P*AP*AP*CP*GP*GP*CP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(P*CP*GP*CP*AP*TP*T)-3'), DNA polymerase, ... 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-19 公開日 2021-01-13 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
7B08	TgoT apo 分子名称: DNA polymerase, THYMIDINE-5'-TRIPHOSPHATE, TRIETHYLENE GLYCOL 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-18 公開日 2020-12-30 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.394 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
7B0F	TgoT_6G12 Binary complex 分子名称: DNA (5'-D(P*AP*AP*CP*GP*GP*CP*TP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(P*CP*GP*CP*AP*TP*T)-3'), DNA polymerase, ... 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-19 公開日 2020-12-30 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.797 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
7B06	TgoT_RT521 apo 分子名称: DNA polymerase 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-18 公開日 2020-12-30 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.349 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
6KF3	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... 著者 Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. 登録日 2019-07-06 公開日 2020-07-01 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
8BZM	FOXK1-ELF1-heterodimer bound to DNA 分子名称: DNA, ETS-related transcription factor Elf-1, Forkhead box protein K1, ... 著者 Morgunova, E, Popov, A, Yin, Y, Taipale, J. 登録日 2022-12-15 公開日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 FOXK1-ELF1_heterodimer bound to DNA To Be Published
3K5O	Crystal structure of E.coli Pol II 分子名称: DNA polymerase II 著者 Yang, W, Wang, F. 登録日 2009-10-07 公開日 2010-02-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural insight into translesion synthesis by DNA Pol II. Cell(Cambridge,Mass.), 139, 2009
4KBM	Structure of the Mtb CarD/RNAP Beta subunit B1-B2 domains complex 分子名称: DNA-directed RNA polymerase subunit beta, RNA polymerase-binding transcription factor CarD 著者 Gulten, G, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC) 登録日 2013-04-23 公開日 2013-10-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1146 Å) 主引用文献 Structure of the Mtb CarD/RNAP beta-Lobes Complex Reveals the Molecular Basis of Interaction and Presents a Distinct DNA-Binding Domain for Mtb CarD. Structure, 21, 2013
8BYX	HOXB13-homodimer bound to DNA 分子名称: DNA, Homeobox protein Hox-B13 著者 Morgunova, E, Popov, A, Yin, Y, Taipale, J. 登録日 2022-12-14 公開日 2023-12-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 HOXB13-homodimer bound to DNA To Be Published
8VFJ	Polymerase Beta Host Guest Complex Containing FapydG base paired with TMP 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(FAP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*TP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 52, 2024
5VVR	Ternary complex of RNA Pol II, transcription scaffold and Rad26 分子名称: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... 著者 Lahiri, I, Leschziner, A.E. 登録日 2017-05-19 公開日 2017-11-22 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structural basis for the initiation of eukaryotic transcription-coupled DNA repair. Nature, 551, 2017
3JR9	Crystal structure of Fis bound to 27 bp optimal binding sequence F2 分子名称: DNA (27-MER), DNA-binding protein fis 著者 Stella, S, Cascio, D, Johnson, R.C. 登録日 2009-09-08 公開日 2010-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010
5KBD	Structural Studies of Transcription Factor p73 DNA Binding Domain Bound to PA26 20-mer Response Element 分子名称: DNA (5'-D(P*AP*GP*AP*CP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*AP*AP*GP*TP*CP*T)-3'), Tumor protein p73, ... 著者 Nguyen, H.T, Huang, D. 登録日 2016-06-03 公開日 2016-08-31 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Studies of Transcription Factor p73 DNA Binding Domain Bound to PA26 20-mer Response Element To Be Published
6CLY	Structure of human DNA polymerase beta complexed with 8-ClG as the template base in a 1-nucleotide gapped DNA 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-02 公開日 2019-03-06 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.186 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG as the template base in a 1-nucleotide gapped DNA To Be Published
4AYB	RNAP at 3.2Ang 分子名称: DNA-DIRECTED RNA POLYMERASE, IRON/SULFUR CLUSTER, MAGNESIUM ION, ... 著者 Wojtas, M.N, Mogni, M, Millet, O, Bell, S.D, Abrescia, N.G.A. 登録日 2012-06-19 公開日 2012-08-08 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3.202 Å) 主引用文献 Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA. Nucleic Acids Res., 40, 2012

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