PDB: 244693 件ウェブページステータス検索Chemie searchBIRD

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8Z70	State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding 分子名称: 18S rRNA, 25S rRNA, 5.8S rRNA, ... 著者 Cheng, J, Wu, C.L, Li, J.X, Zhang, X.Z. 登録日 2024-04-19 公開日 2024-12-11 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Capturing eukaryotic ribosome dynamics in situ at high resolution. Nat.Struct.Mol.Biol., 32, 2025
3GVG	Crystal structure of Triosephosphate isomerase from Mycobacterium tuberculosis 分子名称: GLYCEROL, Triosephosphate isomerase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2009-03-31 公開日 2009-04-14 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb), 95, 2015
4QOC	crystal structure of compound 16 bound to MDM2(17-111), {(3R,5R,6S)-5-(3-CHLOROPHENYL)-6-(4-CHLOROPHENYL)-1-[(1S)-1-CYCLOPROPYL-2-(PYRROLIDIN-1-YLSULFONYL)ETHYL]-3-METHYL-2-OXOPIPERIDIN-3-YL}ACETIC ACID 分子名称: E3 ubiquitin-protein ligase Mdm2, {(3R,5R,6S)-5-(3-chlorophenyl)-6-(4-chlorophenyl)-1-[(1S)-1-cyclopropyl-2-(pyrrolidin-1-ylsulfonyl)ethyl]-3-methyl-2-oxopiperidin-3-yl}acetic acid 著者 Huang, X. 登録日 2014-06-19 公開日 2015-05-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Optimization beyond AMG 232: discovery and SAR of sulfonamides on a piperidinone scaffold as potent inhibitors of the MDM2-p53 protein-protein interaction. Bioorg.Med.Chem.Lett., 24, 2014
7H20	PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z4605084899 分子名称: 3-ethenyl-1,2-dimethyl-pyrazole, DIMETHYL SULFOXIDE, SULFATE ION, ... 著者 Ni, X, Godoy, A.S, Marples, P.G, Fairhead, M, Balcomb, B.H, Tomlinson, C.W.E, Koekemoer, L, Aschenbrenner, J.C, Lithgo, R.M, Thompson, W, Wild, C, Williams, E.P, Winokan, M, Chandran, A.V, Fearon, D, Walsh, M.A, von Delft, F. 登録日 2024-04-03 公開日 2024-05-08 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.39 Å) 主引用文献 PanDDA analysis group deposition of ZIKV NS2B-NS3 protease To Be Published
3GWC	Crystal structure of Mycobacterium tuberculosis thymidylate synthase X bound to FdUMP and FAD 分子名称: 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2009-03-31 公開日 2009-04-28 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb), 95, 2015
5LJ3	Structure of the core of the yeast spliceosome immediately after branching 分子名称: CEF1, CLF1, CWC15, ... 著者 Galej, W.P, Wilkinson, M.F, Fica, S.M, Oubridge, C, Newman, A.J, Nagai, K. 登録日 2016-07-17 公開日 2016-08-03 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Cryo-EM structure of the spliceosome immediately after branching. Nature, 537, 2016
4EOX	X-ray Structure of Polypeptide Deformylase Bound to a Acylprolinamide inhibitor 分子名称: N-benzoyl-1-[(2R)-3-cyclopentyl-2-{[formyl(hydroxy)amino]methyl}propanoyl]-L-prolinamide, NICKEL (II) ION, Peptide deformylase 著者 Ward, P, Campobasso, N. 登録日 2012-04-16 公開日 2012-05-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.783 Å) 主引用文献 Acylprolinamides: a new class of peptide deformylase inhibitors with in vivo antibacterial activity. Bioorg.Med.Chem.Lett., 22, 2012
8A10	Crystal Structure of human Brachyury G177D variant in complex with Molpolrt-020-049-143 分子名称: 5-[[(3S)-1-(2-chlorophenyl)-2-oxidanylidene-pyrrolidin-3-yl]amino]-2-methyl-benzamide, T-box transcription factor T 著者 Newman, J.A, Gavard, A, Aitkenhead, H, Imprachim, N, Sherestha, L, Burgess-Brown, N.A, von Delft, F, Bountra, C, Gileadi, O. 登録日 2022-05-30 公開日 2022-07-13 最終更新日 2025-02-26 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Structural insights into human brachyury DNA recognition and discovery of progressible binders for cancer therapy. Nat Commun, 16, 2025
4EP4	Thermus thermophilus RuvC structure 分子名称: Crossover junction endodeoxyribonuclease RuvC, GLYCEROL, MAGNESIUM ION 著者 Chen, L, Shi, K, Yin, Z.Q, Aihara, H. 登録日 2012-04-17 公開日 2012-11-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.28 Å) 主引用文献 Structural asymmetry in the Thermus thermophilus RuvC dimer suggests a basis for sequential strand cleavages during Holliday junction resolution. Nucleic Acids Res., 41, 2013
7CP0	Crystal Structure of double mutant Y115E Y117E human Secretory Glutaminyl Cyclase 分子名称: 1,2-ETHANEDIOL, Glutaminyl-peptide cyclotransferase, SULFATE ION, ... 著者 Dileep, K.V, Ihara, K, Sakai, N, Shirozu, M, Zhang, K.Y.J. 登録日 2020-08-05 公開日 2021-01-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors. Int.J.Biol.Macromol., 170, 2020
3OVS	How the CCA-adding Enzyme Selects Adenine over Cytosine in Position 76 of tRNA 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CCA-Adding Enzyme, ... 著者 Pan, B.C, Xiong, Y, Steitz, T.A. 登録日 2010-09-17 公開日 2010-12-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 How the CCA-Adding Enzyme Selects Adenine over Cytosine at Position 76 of tRNA. Science, 330, 2010
6PCH	E. coli 50S ribosome bound to compound 21 分子名称: (3R,4R,5E,10E,12E,14S,26aR)-14-hydroxy-12-methyl-3-(propan-2-yl)-4-(prop-2-en-1-yl)-8,9,14,15,24,25,26,26a-octahydro-1H,3H,22H-21,18-(azeno)pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosine-1,7,16,22(4H,17H)-tetrone, 23S ribosomal RNA, 50S ribosomal protein L13, ... 著者 Pellegrino, J, Lee, D.J, Fraser, J.S, Seiple, I.B. 登録日 2019-06-17 公開日 2020-06-17 最終更新日 2024-12-25 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Synthetic group A streptogramin antibiotics that overcome Vat resistance. Nature, 586, 2020
9CT8	Tricomplex of Compound 2, KRAS G12D, and CypA 分子名称: (2R)-2-amino-N-(2-{[(1R)-1-cyclopentyl-2-{[(1M,8S,10S,14S,21M)-22-ethyl-4-hydroxy-21-{2-[(1R)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]amino}-2-oxoethyl](methyl)amino}-2-oxoethyl)-N-methylpropanamide (non-preferred name), CHLORIDE ION, Isoform 2B of GTPase KRas, ... 著者 Zhang, D, Bar Ziv, T, Knox, J.E, Yano, J.K. 登録日 2024-07-24 公開日 2025-07-23 最終更新日 2025-08-06 実験手法 X-RAY DIFFRACTION (1.28 Å) 主引用文献 A neomorphic protein interface catalyzes covalent inhibition of RAS G12D aspartic acid in tumors. Science, 389, 2025
7COV	Potato D-enzyme, native (substrate free) 分子名称: 4-alpha-glucanotransferase, chloroplastic/amyloplastic, CALCIUM ION, ... 著者 Unno, H, Imamura, K. 登録日 2020-08-05 公開日 2020-08-26 最終更新日 2025-03-12 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural analysis and reaction mechanism of the disproportionating enzyme (D-enzyme) from potato. Protein Sci., 29, 2020
9CTA	Tricomplex of RMC-9945, KRAS G12D, and CypA 分子名称: (2R)-2-{(5S)-7-[(2R)-3-cyclopropyl-2-(methylamino)propanoyl]-2,7-diazaspiro[4.4]nonan-2-yl}-N-[(1P,7S,9S,13S,20M)-20-{5-(4-cyclopropylpiperazin-1-yl)-2-[(1R)-1-methoxyethyl]pyridin-3-yl}-17,17-dimethyl-8,14-dioxo-21-(2,2,2-trifluoroethyl)-15-oxa-4-thia-9,21,27,28-tetraazapentacyclo[17.5.2.1~2,5~.1~9,13~.0~22,26~]octacosa-1(24),2,5(28),19,22,25-hexaen-7-yl]-3-methylbutanamide (non-preferred name), Isoform 2B of GTPase KRas, MAGNESIUM ION, ... 著者 Zhang, D, Saldajeno-Concar, M, Tomlinson, A.C.A, Yano, J.K, Knox, J.E. 登録日 2024-07-24 公開日 2025-07-23 最終更新日 2025-08-06 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 A neomorphic protein interface catalyzes covalent inhibition of RAS G12D aspartic acid in tumors. Science, 389, 2025
4EIU	Crystal structure of a DUF3823 family protein (BACUNI_03093) from Bacteroides uniformis ATCC 8492 at 1.90 A resolution 分子名称: DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL, uncharacterized hypothetical protein 著者 Joint Center for Structural Genomics (JCSG) 登録日 2012-04-05 公開日 2012-05-30 最終更新日 2024-11-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of a hypothetical protein (BACUNI_03093) from Bacteroides uniformis ATCC 8492 at 1.90 A resolution To be published
3H10	Aurora A inhibitor complex 分子名称: 9-chloro-7-(2,6-difluorophenyl)-N-{4-[(4-methylpiperazin-1-yl)carbonyl]phenyl}-5H-pyrimido[5,4-d][2]benzazepin-2-amine, Serine/threonine-protein kinase 6 著者 Wiesmann, C, Ultsch, M.H, Cochran, A.G. 登録日 2009-04-10 公開日 2009-07-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A class of 2,4-bisanilinopyrimidine Aurora A inhibitors with unusually high selectivity against Aurora B. J.Med.Chem., 52, 2009
9JH3	CMF-019 with APLNR-Gi complex 分子名称: (3~{S})-5-methyl-3-[[1-pentan-3-yl-2-(thiophen-2-ylmethyl)benzimidazol-5-yl]carbonylamino]hexanoic acid, Apelin receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... 著者 Tian, X.W, Zhao, C, Feng, Y.Y, Shao, Z.H. 登録日 2024-09-08 公開日 2025-04-23 最終更新日 2025-06-25 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 Multiscale biased chemical space remodeling for developing APLNR agonists with anti-HFpEF efficacy. Proc.Natl.Acad.Sci.USA, 122, 2025
4IC9	Crystal structure of the full-length matrix subunit (p15) of the Feline Immunodeficiency Virus (FIV) Gag polyprotein 分子名称: 1,2-ETHANEDIOL, Matrix protein p15 著者 Serriere, J, Robert, X, Perez, M, Gouet, P, Guillon, C. 登録日 2012-12-10 公開日 2013-07-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Biophysical characterization and crystal structure of the Feline Immunodeficiency Virus p15 matrix protein. Retrovirology, 10, 2013
7L9L	Crystal structure of the second bromodomain (BD2) of human BRD3 bound to BI2536 分子名称: 1,2-ETHANEDIOL, 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Bromodomain-containing protein 3 著者 Karim, M.R, Bikowitz, M.J, Schonbrunn, E. 登録日 2021-01-04 公開日 2021-07-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem., 64, 2021
7X1O	Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with double inhibitors HF and L95 分子名称: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one, BROMIDE ION, Bifunctional glutamate/proline--tRNA ligase, ... 著者 Manickam, Y, Babbar, P, Sharma, A. 登録日 2022-02-24 公開日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Crystal structure of Homo sapiens Prolyl-tRNA synthetase (HsPRS) with double inhibitors (HF and L95) To Be Published
7TZ2	Structure of human Fibrinogen-like protein 1 分子名称: CALCIUM ION, Fibrinogen-like protein 1 著者 Ming, Q, Tran, T.H, Luca, V.C. 登録日 2022-02-15 公開日 2022-05-11 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 LAG3 ectodomain structure reveals functional interfaces for ligand and antibody recognition. Nat.Immunol., 23, 2022
4BMX	Native structure of futalosine hydrolase of Helicobacter pylori strain 26695 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENINE, MTA/SAH NUCLEOSIDASE 著者 Kim, R.Q, Offen, W.A, Stubbs, K.A, Davies, G.J. 登録日 2013-05-12 公開日 2013-09-11 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Structural Enzymology of Helicobacter Pylori Methylthioadenosine Nucleosidase in the Futalosine Pathway Acta Crystallogr.,Sect.D, 70, 2014
5IS4	Endothiapepsin in complex with chiral brominated primary amine fragment 分子名称: (1S)-2-amino-1-(4-bromophenyl)ethan-1-ol, ACETATE ION, DIMETHYL SULFOXIDE, ... 著者 Radeva, N, Heine, A, Klebe, G. 登録日 2016-03-15 公開日 2017-03-29 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.368 Å) 主引用文献 Crystallographic Fragment Screening of an Entire Library to be published
7X3P	Crystal structure of human SIRT5 in complex with diazirine inhibitor 9 分子名称: 5-[[(5~{S})-6-[[(1~{S})-1-(4-hydroxyphenyl)-2-oxidanylidene-2-(prop-2-ynylamino)ethyl]amino]-6-oxidanylidene-5-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]carbonylamino]hexyl]amino]-5-sulfanylidene-pentanoic acid, DI(HYDROXYETHYL)ETHER, NAD-dependent protein deacylase sirtuin-5, ... 著者 Li, G.-B, Deng, J. 登録日 2022-03-01 公開日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 Crystal structure of human SIRT5 in complex with diazirine inhibitor 9 To Be Published

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