PDB: 1384 件ウェブページステータス検索Chemie searchBIRD

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8JDJ	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2023-05-14 公開日 2023-12-06 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
8JDK	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2023-05-14 公開日 2023-12-06 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.26 Å) 主引用文献 Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
6V39	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
8K2C	Cryo-EM structure of the human 80S ribosome with Tigecycline 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Li, X, Wang, M, Cheng, J. 登録日 2023-07-12 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
8P18	E167K RF2 on E. coli 70S release complex with UGG (Structure III) 分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ... 著者 Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S. 登録日 2023-05-11 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.77 Å) 主引用文献 The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria To Be Published
8OO0	Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S0, ... 著者 Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. 登録日 2023-04-04 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
6SWC	IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi 分子名称: 16S ribosomal rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Coureux, P.-D, Mechulam, Y, Schmitt, E. 登録日 2019-09-20 公開日 2020-02-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation. Commun Biol, 3, 2020
6SWE	IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S13, ... 著者 Coureux, P.-D, Mechulam, Y, Schmitt, E. 登録日 2019-09-20 公開日 2020-02-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation. Commun Biol, 3, 2020
8P2K	Ternary complex of translating ribosome, NAC and METAP1 分子名称: 18s rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Jia, M, Jaskolowski, M, Scaiola, A, Jomaa, A, Ban, N. 登録日 2023-05-16 公開日 2023-07-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 NAC controls cotranslational N-terminal methionine excision in eukaryotes. Science, 380, 2023
6SPC	Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Halfon, Y, Jimenez-Fernande, A, La Ros, R, Espinos, R, Krogh Johansen, H, Matzov, D, Eyal, Z, Bashan, A, Zimmerman, E, Belousoff, M, Molin, S, Yonath, A. 登録日 2019-09-01 公開日 2019-10-16 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate. Proc.Natl.Acad.Sci.USA, 116, 2019
6V3B	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
5ME0	Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Lopez-Alonso, J.P, Fabbretti, A, Kaminishi, T, Iturrioz, I, Brandi, L, Gil Carton, D, Gualerzi, C, Fucini, P, Connell, S. 登録日 2016-11-14 公開日 2017-01-11 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (13.5 Å) 主引用文献 Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways. Nucleic Acids Res., 45, 2017
5U4J	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S12, ... 著者 Zeng, F, Chen, Y, Remis, J, Shekhar, M, Phillips, J.C, Tajkhorshid, E, Jin, H. 登録日 2016-12-04 公開日 2017-01-11 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome. Nature, 541, 2017
5MY1	E. coli expressome 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Kohler, R, Mooney, R.A, Mills, D.J, Kostrewa, D, Landick, R, Cramer, P. 登録日 2017-01-25 公開日 2017-04-26 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (7.6 Å) 主引用文献 Architecture of a transcribing-translating expressome. Science, 356, 2017
5MYJ	Structure of 70S ribosome from Lactococcus lactis 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Franken, L.E, Oostergetel, G.T, Pijning, T, Puri, P, Boekema, E.J, Poolman, B, Guskov, A. 登録日 2017-01-26 公開日 2017-10-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.6 Å) 主引用文献 A general mechanism of ribosome dimerization revealed by single-particle cryo-electron microscopy. Nat Commun, 8, 2017
5UQ7	70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M. 登録日 2017-02-07 公開日 2018-03-07 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel. Structure, 26, 2018
4JI2	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... 著者 Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-03-05 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.64 Å) 主引用文献 The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
5NWY	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Su, T, Cheng, J, Sohmen, D, Hedman, R, Berninghausen, O, von Heijne, G, Wilson, D.N, Beckmann, R. 登録日 2017-05-08 公開日 2017-07-19 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling. Elife, 6, 2017
5O5J	Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Hentschel, J, Burnside, C, Mignot, I, Leibundgut, M, Boehringer, D, Ban, N. 登録日 2017-06-02 公開日 2017-07-12 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.451 Å) 主引用文献 The Complete Structure of the Mycobacterium smegmatis 70S Ribosome. Cell Rep, 20, 2017
5NDG	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDJ	Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2018-05-02 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDV	Crystal structure of Paromomycin bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-09 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5U9F	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Demo, G, Svidritskiy, E, Madireddy, R, Diaz-Avalos, R, Grant, T, Grigorieff, N, Sousa, D, Korostelev, A.A. 登録日 2016-12-16 公開日 2017-03-22 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanism of ribosome rescue by ArfA and RF2. Elife, 6, 2017
5VP2	Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution 分子名称: 16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Osterman, I.A, Khabibullina, N.F, Komarova, E.S, Kasatsky, P, Kartsev, V.G, Bogdanov, A.A, Dontsova, O.A, Konevega, A.L, Sergiev, P.V, Polikanov, Y.S. 登録日 2017-05-04 公開日 2017-06-28 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state. Nucleic Acids Res., 45, 2017
5O61	The complete structure of the Mycobacterium smegmatis 70S ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hentschel, J, Burnside, C, Mignot, I, Leibundgut, M, Boehringer, D, Ban, N. 登録日 2017-06-03 公開日 2017-07-12 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.31 Å) 主引用文献 The Complete Structure of the Mycobacterium smegmatis 70S Ribosome. Cell Rep, 20, 2017

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