PDB: 532 件ウェブページステータス検索Chemie searchBIRD

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1XUW	Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs 分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*(NMT)P*AP*CP*GP*C)-3') 著者 Pattanayek, R, Sethaphong, L, Pan, C, Prhavc, M, Prakash, T.P, Manoharan, M, Egli, M. 登録日 2004-10-26 公開日 2004-12-14 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues. J.Am.Chem.Soc., 126, 2004
1UPU	STRUCTURE OF THE URACIL PHOSPHORIBOSYLTRANSFERASE, MUTANT C128V, BOUND TO PRODUCT URIDINE-1-MONOPHOSPHATE (UMP) 分子名称: PHOSPHATE ION, URACIL PHOSPHORIBOSYLTRANSFERASE, URIDINE-5'-MONOPHOSPHATE 著者 Schumacher, M.A, Carter, D, Scott, D, Roos, D, Ullman, B, Brennan, R.G. 登録日 1998-04-16 公開日 1999-05-11 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structures of Toxoplasma gondii uracil phosphoribosyltransferase reveal the atomic basis of pyrimidine discrimination and prodrug binding. EMBO J., 17, 1998
1XUX	Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs 分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3') 著者 Pattanayek, R, Sethaphong, L, Pan, C, Prhavc, M, Prakash, T.P, Manoharan, M, Egli, M. 登録日 2004-10-26 公開日 2004-12-14 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues. J.Am.Chem.Soc., 126, 2004
1OKF	NMR structure of an alpha-L-LNA:RNA hybrid 分子名称: 5'-D(*CP*ATLP*GP*AP*ATLP*AP*ATLP*GP*CP)-3', 5'-R(*GP*CP*AP*UP*AP*UP*CP*AP*GP)-3' 著者 Nielsen, J.T, Stein, P.C, Petersen, M. 登録日 2003-07-23 公開日 2003-10-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR Structure of an Alpha-L-Lna:RNA Hybrid: Structural Implications for Rnase H Recognition Nucleic Acids Res., 31, 2003
1OCI	[3.2.0]bcANA:DNA 分子名称: 5'-D(*CP*TP*GP*A TLBP*AP*TP*GP*CP)-3', 5'-D(*GP*CP*AP*TP*AP*TP*CP*AP*GP)-3' 著者 Tommerholt, H.V, Christensen, N.K, Nielsen, P, Wengel, J, Stein, P.C, Jacobsen, J.P, Petersen, M. 登録日 2003-02-07 公開日 2003-07-14 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR Solution Structure of a DsDNA Containing a Bicyclic D-Arabino-Configured Nucleotide Fixed in an O4'-Endo Sugar Conformation Org.Biomol.Chem., 1, 2003
7YEI	TR-SFX MmCPDII-DNA complex: 10 ns time-point collected in SACLA. Includes 10 ns, dark, and extrapolated structure factors 分子名称: CPD photolesion containing DNA after repair, Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D. 登録日 2022-07-05 公開日 2023-11-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Visualizing the DNA repair process by a photolyase at atomic resolution. Science, 382, 2023
7YEK	TR-SFX MmCPDII-DNA complex: 500 ns time-point collected in SACLA. Includes 500 ns, dark, and extrapolated structure factors 分子名称: CPD photolesion containing DNA after repair, Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D. 登録日 2022-07-06 公開日 2023-11-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Visualizing the DNA repair process by a photolyase at atomic resolution. Science, 382, 2023
7YEJ	TR-SFX MmCPDII-DNA complex: 100 ns time-point collected in SACLA. Includes 100 ns, dark, and extrapolated structure factors 分子名称: CPD photolesion containing DNA after repair, Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D. 登録日 2022-07-05 公開日 2023-11-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Visualizing the DNA repair process by a photolyase at atomic resolution. Science, 382, 2023
7YEM	TR-SFX MmCPDII-DNA complex: 200 us time-point collected in SACLA. Includes 200 us, dark, and extrapolated structure factors 分子名称: CPD photolesion containing DNA after repair, Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D. 登録日 2022-07-06 公開日 2023-11-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Visualizing the DNA repair process by a photolyase at atomic resolution. Science, 382, 2023
3ULM	X-ray Diffraction Studies of Ring Crystals obtained for d(CACGCG).d(CGCGTG): Stage (ii) Hexagonal plates with spots 分子名称: 6-mer DNA 著者 Mandal, P.K, Venkadesh, S, Gautham, N. 登録日 2011-11-11 公開日 2012-07-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Ring crystals of oligonucleotides: Growth stages and X-ray diffraction studies J.Cryst.Growth, 354, 2012
3ULO	X-ray Diffraction Studies of Ring Crystals obtained for d(CACGCG).d(CGCGTG): Stage (iv) Hexagonal rings 分子名称: 6-mer DNA 著者 Mandal, P.K, Venkadesh, S, Gautham, N. 登録日 2011-11-11 公開日 2012-07-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Ring crystals of oligonucleotides: Growth stages and X-ray diffraction studies J.Cryst.Growth, 354, 2012
2UYZ	Non-covalent complex between Ubc9 and SUMO1 分子名称: SMALL UBIQUITIN-RELATED MODIFIER 1, SODIUM ION, SUMO-CONJUGATING ENZYME UBC9 著者 Knipscheer, P, van Dijk, W.J, Olsen, J.V, Mann, M, Sixma, T.K. 登録日 2007-04-21 公開日 2007-06-12 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation. EMBO J., 26, 2007
2ZO1	Mouse NP95 SRA domain DNA specific complex 2 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), ... 著者 Hashimoto, H, Horton, J.R, Cheng, X. 登録日 2008-05-05 公開日 2008-09-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix Nature, 455, 2008
2ZO0	mouse NP95 SRA domain DNA specific complex 1 分子名称: DNA (5'-D(*DGP*DTP*DCP*DAP*DGP*(5CM)P*DGP*DCP*DAP*DAP*DTP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3'), E3 ubiquitin-protein ligase UHRF1 著者 Hashimoto, H, Horton, J.R, Cheng, X. 登録日 2008-05-05 公開日 2008-09-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix Nature, 455, 2008
2ZO2	Mouse NP95 SRA domain non-specific DNA complex 分子名称: DNA (5'-D(*DAP*DAP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DTP*DT)-3'), E3 ubiquitin-protein ligase UHRF1, PHOSPHATE ION 著者 Hashimoto, H, Horton, J.R, Cheng, X. 登録日 2008-05-05 公開日 2008-09-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix Nature, 455, 2008
2VRR	Structure of SUMO modified Ubc9 分子名称: FORMIC ACID, SMALL UBIQUITIN-RELATED MODIFIER 1, SODIUM ION, ... 著者 Knipscheer, P, Flotho, A, Klug, H, Olsen, J.V, van Dijk, W.J, Fish, A, Johnson, E.S, Mann, M, Sixma, T.K, Pichler, A. 登録日 2008-04-13 公開日 2008-08-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 Ubc9 sumoylation regulates SUMO target discrimination. Mol. Cell, 31, 2008
2FDC	Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complex 分子名称: 5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3', N-[6-(ACETYLAMINO)HEXYL]-3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-6-CARBOXAMIDE, UvrABC system protein B 著者 Truglio, J.J, Kisker, C. 登録日 2005-12-13 公開日 2006-03-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis for DNA recognition and processing by UvrB. Nat.Struct.Mol.Biol., 13, 2006
2G1Z	X-ray structure of the oligonucleotide sequence d(AAATTT) 分子名称: 5'-D(*AP*AP*AP*TP*TP*T)-3' 著者 Valls, N, Santaolalla, A, Campos, J.L, Subirana, J.A. 登録日 2006-02-15 公開日 2006-03-21 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Packing features of the all-AT oligonucleotide d(AAATTT). J.Biomol.Struct.Dyn., 24, 2007
1I5Z	STRUCTURE OF CRP-CAMP AT 1.9 A 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CATABOLITE GENE ACTIVATOR PROTEIN 著者 White, M.A, Lee, J.C, Fox, R.O. 登録日 2001-03-01 公開日 2003-06-17 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The effect of the D53H point mutation on the macroscopic motions of E. coli Cyclic AMP Receptor Protein To be Published
1I6X	STRUCTURE OF A STAR MUTANT CRP-CAMP AT 2.2 A 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CATABOLITE GENE ACTIVATOR PROTEIN 著者 White, M.A, Lee, J.C, Fox, R.O. 登録日 2001-03-06 公開日 2003-06-17 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The effect of the D53H point mutation on the macroscopic motions of E. coli Cyclic AMP Receptor Protein To be Published
2H9S	Crystal Structure of Homo-DNA and Nature's Choice of Pentose over Hexose in the Genetic System 分子名称: 5'-D(*(XCT)P*(XGU)P*(XAD)P*(XAD)P*(XTH)P*(XTH)P*(XCT)P*(XGU))-3', MAGNESIUM ION 著者 Egli, M, Pallan, P.S. 登録日 2006-06-11 公開日 2006-12-12 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of homo-DNA and nature's choice of pentose over hexose in the genetic system. J.Am.Chem.Soc., 128, 2006
2IJG	Crystal Structure of cryptochrome 3 from Arabidopsis thaliana 分子名称: 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, Cryptochrome DASH, chloroplast/mitochondrial, ... 著者 Huang, Y, Deisenhofer, J. 登録日 2006-09-29 公開日 2006-11-28 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity Proc.Natl.Acad.Sci.Usa, 103, 2006
2IY1	SENP1 (mutant) full length SUMO1 分子名称: SENTRIN-SPECIFIC PROTEASE 1, SMALL UBIQUITIN-RELATED MODIFIER 1 著者 Shen, L, Dong, C, Naismith, J.H. 登録日 2006-07-11 公開日 2006-08-15 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Sumo Protease Senp1 Induces Isomerization of the Scissile Peptide Bond. Nat.Struct.Mol.Biol., 13, 2006
2IYD	SENP1 covalent complex with SUMO-2 分子名称: SENTRIN-SPECIFIC PROTEASE 1, SMALL UBIQUITIN-RELATED MODIFIER 2 著者 Dong, C, Naismith, J.H. 登録日 2006-07-14 公開日 2006-08-08 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Senp1 Native Structure To be Published
1HW5	THE CAP/CRP VARIANT T127L/S128A 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CATABOLITE GENE ACTIVATOR 著者 Chu, S.Y, Tordova, M, Gilliland, G.L, Gorshkova, I, Shi, Y. 登録日 2001-01-09 公開日 2001-01-17 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 The structure of the T127L/S128A mutant of cAMP receptor protein facilitates promoter site binding J.Biol.Chem., 276, 2001

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