PDB: 238 件ウェブページステータス検索Chemie searchBIRD

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7APY	Pseudomonas stutzeri nitrous oxide reductase mutant, D576A 分子名称: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... 著者 Zhang, L, Bill, E, Kroneck, P.M.H, Einsle, O. 登録日 2020-10-20 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.778 Å) 主引用文献 Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc., 143, 2021
7AQA	Pseudomonas stutzeri nitrous oxide reductase mutant, H382A 分子名称: (dicuprio-$l^{3}-sulfanyl)-sulfanyl-copper, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... 著者 Zhang, L, Bill, E, Kroneck, P.M.H, Einsle, O. 登録日 2020-10-20 公開日 2021-01-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.497 Å) 主引用文献 A [3Cu:2S] cluster provides insight into the assembly and function of the Cu Z site of nitrous oxide reductase. Chem Sci, 12, 2021
7AQ3	Pseudomonas stutzeri nitrous oxide reductase mutant, H583D 分子名称: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... 著者 Zhang, L, Bill, E, Kroneck, P.M.H, Einsle, O. 登録日 2020-10-20 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.639 Å) 主引用文献 Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc., 143, 2021
7AQ0	Pseudomonas stutzeri nitrous oxide reductase mutant, D576A/S550A 分子名称: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... 著者 Zhang, L, Bill, E, Kroneck, P.M.H, Einsle, O. 登録日 2020-10-20 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.584 Å) 主引用文献 Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc., 143, 2021
7AQ9	Pseudomonas stutzeri nitrous oxide reductase mutant, H583W 分子名称: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... 著者 Zhang, L, Bill, E, Kroneck, P.M.H, Einsle, O. 登録日 2020-10-20 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.585 Å) 主引用文献 Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc., 143, 2021
7AQ2	Pseudomonas stutzeri nitrous oxide reductase mutant, H583A 分子名称: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... 著者 Zhang, L, Bill, E, Kroneck, P.M.H, Einsle, O. 登録日 2020-10-20 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.683 Å) 主引用文献 Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc., 143, 2021
3SBP	Pseudomonas stutzeri nitrous oxide reductase, P1 crystal form 分子名称: CALCIUM ION, CHLORIDE ION, DINUCLEAR COPPER ION, ... 著者 Pomowski, A, Zumft, W.G, Kroneck, P.M.H, Einsle, O. 登録日 2011-06-06 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 N2O binding at a [4Cu:2S] copper-sulphur cluster in nitrous oxide reductase. Nature, 477, 2011
3SBR	Pseudomonas stutzeri nitrous oxide reductase, P1 crystal form with substrate 分子名称: CALCIUM ION, CHLORIDE ION, DINUCLEAR COPPER ION, ... 著者 Pomowski, A, Zumft, W.G, Kroneck, P.M.H, Einsle, O. 登録日 2011-06-06 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 N2O binding at a [4Cu:2S] copper-sulphur cluster in nitrous oxide reductase. Nature, 477, 2011
3SBQ	Pseudomonas stutzeri nitrous oxide reductase, P65 crystal form 分子名称: CALCIUM ION, CHLORIDE ION, DINUCLEAR COPPER ION, ... 著者 Pomowski, A, Zumft, W.G, Kroneck, P.M.H, Einsle, O. 登録日 2011-06-06 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 N2O binding at a [4Cu:2S] copper-sulphur cluster in nitrous oxide reductase. Nature, 477, 2011
2GSM	Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides 分子名称: CADMIUM ION, CALCIUM ION, COPPER (II) ION, ... 著者 Qin, L, Hiser, C, Mulichak, A, Garavito, R.M, Ferguson-Miller, S. 登録日 2006-04-26 公開日 2006-10-10 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase. Proc.Natl.Acad.Sci.Usa, 103, 2006
5IY5	Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom resolution 分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... 著者 Shimada, S, Baba, J, Aoe, S, Shimada, A, Yamashita, E, Tsukihara, T. 登録日 2016-03-24 公開日 2017-01-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Complex structure of cytochrome c-cytochrome c oxidase reveals a novel protein-protein interaction mode EMBO J., 36, 2017
6KOB	X-ray Structure of the proton-pumping cytochrome aa3-600 menaquinol oxidase from Bacillus subtilis 分子名称: AA3-600 quinol oxidase subunit I, AA3-600 quinol oxidase subunit IIII, AA3-600 quinol oxidase subunit IV,Quinol oxidase subunit 4, ... 著者 Xu, J, Ding, Z, Liu, B, Li, J, Gennis, R.B, Zhu, J. 登録日 2019-08-09 公開日 2020-01-15 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structure of the cytochromeaa3-600 heme-copper menaquinol oxidase bound to inhibitor HQNO shows TM0 is part of the quinol binding site. Proc.Natl.Acad.Sci.USA, 117, 2020
3BVD	Structure of Surface-engineered Cytochrome ba3 Oxidase from Thermus thermophilus under Xenon Pressure, 100psi 5min 分子名称: COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, Cytochrome c oxidase subunit 1, ... 著者 Luna, V.M, Chen, Y, Fee, J.A, Stout, C.D. 登録日 2008-01-07 公開日 2008-05-20 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.37 Å) 主引用文献 Crystallographic Studies of Xe and Kr Binding within the Large Internal Cavity of Cytochrome ba3 from Thermus thermophilus: Structural Analysis and Role of Oxygen Transport Channels in the Heme-Cu Oxidases. Biochemistry, 47, 2008
1FFT	The structure of ubiquinol oxidase from Escherichia coli 分子名称: COPPER (II) ION, HEME O, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Abramson, J, Riistama, S, Larsson, G, Jasaitis, A, Svensson-Ek, M, Puustinen, A, Iwata, S, Wikstrom, M. 登録日 2000-07-26 公開日 2000-10-18 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site. Nat.Struct.Biol., 7, 2000
2FWL	The cytochrome c552/CuA complex from Thermus thermophilus 分子名称: Cytochrome c oxidase subunit II, Cytochrome c-552, DINUCLEAR COPPER ION, ... 著者 Muresanu, L, Pristovsek, P, Loehr, F, Maneg, O, Mukrasch, M.D, Rueterjans, H, Ludwig, B, Luecke, C. 登録日 2006-02-02 公開日 2006-03-28 最終更新日 2011-07-13 実験手法 SOLUTION NMR 主引用文献 The electron transfer complex between cytochrome c552 and the CuA domain of the Thermus thermophilus ba3 oxidase - a combined NMR and computational approach J.Biol.Chem., 281, 2006
8C8Q	Cytochrome c oxidase from Schizosaccharomyces pombe 分子名称: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase polypeptide 5, ... 著者 Moe, A, Adelroth, P, Brzezinski, P, Nasvik Ojemyr, L. 登録日 2023-01-20 公開日 2023-03-01 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Cryo-EM structure and function of S. pombe complex IV with bound respiratory supercomplex factor. Commun Chem, 6, 2023
4N4Y	Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ... 著者 Li, Y, Chen, Y, Stout, C.D. 登録日 2013-10-08 公開日 2014-10-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus To be Published
8IJN	Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K 分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... 著者 Tsukihara, T, Shimada, A, Muramoto, K. 登録日 2023-02-27 公開日 2023-04-12 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate. Proc.Natl.Acad.Sci.USA, 107, 2010
1XME	Structure of Recombinant Cytochrome ba3 Oxidase from Thermus thermophilus 分子名称: COPPER (II) ION, Cytochrome c oxidase polypeptide I, Cytochrome c oxidase polypeptide II, ... 著者 Hunsicker-Wang, L.M, Pacoma, R.L, Chen, Y, Fee, J.A, Stout, C.D. 登録日 2004-10-01 公開日 2005-03-22 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A novel cryoprotection scheme for enhancing the diffraction of crystals of recombinant cytochrome ba3 oxidase from Thermus thermophilus. Acta Crystallogr.,Sect.D, 61, 2005
3HB3	High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase 分子名称: ANTIBODY FV FRAGMENT, CALCIUM ION, COPPER (I) ION, ... 著者 Koepke, J, Angerer, H, Peng, G. 登録日 2009-05-04 公開日 2009-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: New insights into the active site and the proton transfer pathways Biochim.Biophys.Acta, 1787, 2009
7N9Z	E. coli cytochrome bo3 in MSP nanodisc 分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ... 著者 Vallese, F, Clarke, O.B. 登録日 2021-06-19 公開日 2021-09-01 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.19 Å) 主引用文献 Cryo-EM structures of Escherichia coli cytochrome bo 3 reveal bound phospholipids and ubiquinone-8 in a dynamic substrate binding site. Proc.Natl.Acad.Sci.USA, 118, 2021
7Q21	III2-IV2 respiratory supercomplex from Corynebacterium glutamicum 分子名称: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ... 著者 Kovalova, T, Moe, A, Krol, S, Yanofsky, D.J, Bott, M, Sjostrand, D, Rubinstein, J.L, Hogbom, M, Brzezinski, P. 登録日 2021-10-22 公開日 2022-02-02 最終更新日 2022-03-16 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 The respiratory supercomplex from C. glutamicum. Structure, 30, 2022
6CI0	Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with E101A (II) mutation 分子名称: (2S,3R)-heptane-1,2,3-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, ... 著者 Liu, J, Hiser, C, Ferguson-Miller, S. 登録日 2018-02-23 公開日 2018-04-25 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The K-path entrance in cytochrome c oxidase is defined by mutation of E101 and controlled by an adjacent ligand binding domain. Biochim. Biophys. Acta, 1859, 2018
6WTI	The Cryo-EM structure of the ubiquinol oxidase from Escherichia coli 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, COPPER (II) ION, Cytochrome o ubiquinol oxidase, ... 著者 Su, C.-C. 登録日 2020-05-02 公開日 2021-01-20 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.38 Å) 主引用文献 A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins. Nat.Methods, 18, 2021
6GIQ	Saccharomyces cerevisiae respiratory supercomplex III2IV 分子名称: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate, (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate, ... 著者 Rathore, S, Berndtsson, J, Conrad, J, Ott, M. 登録日 2018-05-15 公開日 2019-01-02 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.23 Å) 主引用文献 Cryo-EM structure of the yeast respiratory supercomplex. Nat. Struct. Mol. Biol., 26, 2019

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