PDB: 14265 件ウェブページステータス検索Chemie searchBIRD

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1OU5	Crystal structure of human CCA-adding enzyme 分子名称: tRNA CCA-adding enzyme 著者 Augustin, M.A, Reichert, A.S, Betat, H, Huber, R, Moerl, M, Steegborn, C. 登録日 2003-03-24 公開日 2003-05-06 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal Structure of the Human CCA-adding Enzyme: Insights into Template-independent Polymerization J.Mol.Biol., 328, 2003
7Z27	Crystal structure of the SPOC domain of human RBM15 分子名称: RNA-binding protein 15 著者 Grishkovskaya, I, Appel, L.M, Djinovic-Carugo, K, Slade, D. 登録日 2022-02-25 公開日 2022-12-07 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators. Nat Commun, 14, 2023
5URN	NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the transactivation domain 1 of p65 分子名称: RNA polymerase II transcription factor B subunit 1, Transcription factor p65 著者 Lecoq, L, Omichinski, J.G, Raiola, L, Cyr, N, Chabot, P, Arseneault, G, Legault, P. 登録日 2017-02-11 公開日 2017-03-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural characterization of interactions between transactivation domain 1 of the p65 subunit of NF-kappa B and transcription regulatory factors. Nucleic Acids Res., 45, 2017
4OWR	Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair Rae1-Nup98 分子名称: Matrix protein, Nuclear pore complex protein Nup98-Nup96, mRNA export factor 著者 Ren, Y, Quan, B, Seo, H.S, Blobel, G. 登録日 2014-02-03 公開日 2014-06-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair (Rae1 Nup98). Proc.Natl.Acad.Sci.USA, 111, 2014
6G2Q	Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCL (S-isomer), beta, gamma dTTP analogue 分子名称: CHLORIDE ION, DNA polymerase beta, Downstream Primer Strand, ... 著者 Batra, V.K, Wilson, S.H. 登録日 2018-03-23 公開日 2018-07-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.148 Å) 主引用文献 Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry, 57, 2018
2B7E	First FF domain of Prp40 Yeast Protein 分子名称: Pre-mRNA processing protein PRP40 著者 Gasch, A, Wiesner, S, Martin-Malpartida, P, Ramirez-Espain, X, Ruiz, L, Macias, M.J. 登録日 2005-10-04 公開日 2005-11-01 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The structure of Prp40 FF1 domain and its interaction with the crn-TPR1 motif of Clf1 gives a new insight into the binding mode of FF domains. J.Biol.Chem., 281, 2006
1TCO	TERNARY COMPLEX OF A CALCINEURIN A FRAGMENT, CALCINEURIN B, FKBP12 AND THE IMMUNOSUPPRESSANT DRUG FK506 (TACROLIMUS) 分子名称: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, CALCIUM ION, FE (III) ION, ... 著者 Griffith, J.P, Kim, J.L, Kim, E.E, Sintchak, M.D, Thomson, J.A, Fitzgibbon, M.J, Fleming, M.A, Caron, P.R, Hsiao, K, Navia, M.A. 登録日 1996-08-21 公開日 1997-02-12 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 X-ray structure of calcineurin inhibited by the immunophilin-immunosuppressant FKBP12-FK506 complex. Cell(Cambridge,Mass.), 82, 1995
4RT3	Ternary complex crystal structure of DNA polymerase Beta with (alpha, beta)-NH-(beta,gamma)-CH2-dTTP 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]amino}phosphoryl]-3,4-dihydrothymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2014-11-12 公開日 2015-07-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Two Scaffolds from Two Flips: (alpha, beta)/(beta, gamma) CH2/NH "Met-Im" Analogues of dTTP. Org.Lett., 17, 2015
8KIA	Tomato spotted wilt virus L protein (apo state) 分子名称: RNA-directed RNA polymerase L 著者 Cao, L, Wang, X. 登録日 2023-08-23 公開日 2024-09-25 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structure of Tomato spotted wilt virus L protein. To Be Published
7Y5M	The OTU domain of Tacheng Tick Virus 1 分子名称: RNA-directed RNA polymerase 著者 Li, Z, Wang, W.J, Xiao, Y.S, Sun, L.T. 登録日 2022-06-17 公開日 2023-06-21 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 The OTU domain of Tacheng Tick Virus 1 To Be Published
4C0H	Extended interface between Pcf11p and Clp1p and structural basis for ATP loss in Gly135Arg point mutant 分子名称: MRNA CLEAVAGE AND POLYADENYLATION FACTOR CLP1, PCF11P 著者 Dupin, A.F, Fribourg, S. 登録日 2013-08-02 公開日 2014-02-19 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for ATP loss by Clp1p in a G135R mutant protein. Biochimie, 101, 2014
7YZV	Ryegrass mottle virus serine protease domain S159A mutant 分子名称: RNA-directed RNA polymerase 著者 Kalnins, G. 登録日 2022-02-21 公開日 2022-03-02 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 VPg Impact on Ryegrass Mottle Virus Serine-like 3C Protease Proteolysis and Structure. Int J Mol Sci, 24, 2023
1O6W	Solution Structure of the Prp40 WW Domain Pair of the Yeast Splicing Factor Prp40 分子名称: PRE-MRNA PROCESSING PROTEIN PRP40 著者 Wiesner, S, Stier, G, Sattler, M, Macias, M.J. 登録日 2002-10-16 公開日 2002-12-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution Structure and Ligand Recognition of the Ww Domain Pair of the Yeast Splicing Factor Prp40 J.Mol.Biol., 324, 2002
3DOM	Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2 分子名称: RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5 著者 Kainov, D.E, Cavarelli, J, Egly, J.M, Poterszman, A. 登録日 2008-07-04 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural basis for group A trichothiodystrophy Nat.Struct.Mol.Biol., 15, 2008
4RT2	Ternary complex crystal structure of DNA polymerase Beta with (alpha,beta)-CH2-(beta,gamma)-NH-dTTP 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2014-11-12 公開日 2015-07-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Two Scaffolds from Two Flips: (alpha, beta)/(beta, gamma) CH2/NH "Met-Im" Analogues of dTTP. Org.Lett., 17, 2015
3DGP	Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2 分子名称: RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5 著者 Kainov, D.E, Cavarelli, J, Egly, J.M, Poterszman, A. 登録日 2008-06-14 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for group A trichothiodystrophy Nat.Struct.Mol.Biol., 15, 2008
4TQR	Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTP 分子名称: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3'), ... 著者 Zhao, L. 登録日 2014-06-11 公開日 2015-01-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Kinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-Induced DNA Replication Stalling. Biochemistry, 54, 2015
4TQS	Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dCTP 分子名称: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3'), ... 著者 Zhao, L. 登録日 2014-06-11 公開日 2015-01-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Kinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-Induced DNA Replication Stalling. Biochemistry, 54, 2015
5V5I	OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.1 分子名称: RNA-directed RNA polymerase L, Ubiquitin variant CC.1 著者 Khare, B, Mark, B.L. 登録日 2017-03-14 公開日 2017-05-10 最終更新日 2020-01-08 実験手法 X-RAY DIFFRACTION (2.201 Å) 主引用文献 OTU protease of Crimean Congo Hemorrhagic Fever Virus bound to ubiquitin variant CC.1 To be published
4I1T	Crystal structure of the cap-snatching endonuclease from Pichinde virus 分子名称: RNA-directed RNA polymerase L 著者 Bussetta, C, Choi, K.H. 登録日 2012-11-21 公開日 2014-02-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of the cap-snatching endonuclease from Pichinde virus, a new world arenavirus To be Published
4KHQ	Ternary complex of RB69 mutant L415F wit DUMPNPP 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... 著者 Clausen, A.R, Pedersen, L.C. 登録日 2013-05-01 公開日 2013-10-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.186 Å) 主引用文献 Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
6BEL	Ternary complex crystal structure of DNA polymerase Beta with R-isomer of beta-gamma-CHF-dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, 2'-deoxy-5'-O-[(R)-{[(R)-[(R)-fluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, CHLORIDE ION, ... 著者 Batra, V.K, Wilson, S.H. 登録日 2017-10-25 公開日 2018-10-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.898 Å) 主引用文献 Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry, 57, 2018
6CR3	Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CBr2, beta, gamma dATP analogue 分子名称: 2'-deoxy-5'-O-[(R)-{[(R)-[dibromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2018-03-16 公開日 2018-06-27 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry, 57, 2018
6CTM	Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCL(R-isomer), beta, gamma dTTP analogue 分子名称: 5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]thymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2018-03-23 公開日 2018-06-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.101 Å) 主引用文献 Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry, 57, 2018
6CTN	Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CFCL,beta-gamma dTTP analogue 分子名称: 5'-O-[(R)-{[(R)-[(S)-chloro(fluoro)phosphonomethyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2018-03-23 公開日 2018-06-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry, 57, 2018

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