PDB: 901 件ウェブページステータス検索Chemie searchBIRD

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4V7J	Structure of RelE nuclease bound to the 70S ribosome (precleavage state) 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E. 登録日 2009-11-02 公開日 2014-07-09 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell(Cambridge,Mass.), 139, 2009
4V9B	Crystal Structure of the 70S ribosome with tigecycline. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Jenner, L, Yusupov, M, Yusupova, G. 登録日 2012-07-18 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis. Proc.Natl.Acad.Sci.USA, 110, 2013
4V84	Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. 登録日 2010-12-13 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 108, 2011
1D4R	29-mer fragment of human srp rna helix 6 分子名称: 29-MER OF MODIFIED SRP RNA HELIX 6, MAGNESIUM ION 著者 Wild, K, Weichenrieder, O, Leonard, G.A, Cusack, S. 登録日 1999-10-05 公開日 1999-12-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The 2 A structure of helix 6 of the human signal recognition particle RNA Structure Fold.Des., 7, 1999
1DLM	STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA 分子名称: CATECHOL 1,2-DIOXYGENASE, FE (III) ION, [1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE 著者 Vetting, M.W, Ohlendorf, D.H. 登録日 1999-12-11 公開日 2000-05-23 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The 1.8 A crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker. Structure Fold.Des., 8, 2000
7BAI	Structure of RIG-I CTD (I875A) bound to p-RNA 分子名称: Antiviral innate immune response receptor RIG-I, RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3'), ZINC ION 著者 Anand, K, Hagelueken, G, Fusshoeller, D, Geyer, M. 登録日 2020-12-15 公開日 2022-01-12 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 A conserved isoleucine in the RNA sensor RIG-I controls immune tolerance to mitochondrial RNA To Be Published
4MQ7	Structure of human CD1d-sulfatide 分子名称: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE, 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d, ... 著者 Luoma, A.M, Adams, E.J. 登録日 2013-09-15 公開日 2013-12-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6032 Å) 主引用文献 Crystal Structure of V delta 1 T Cell Receptor in Complex with CD1d-Sulfatide Shows MHC-like Recognition of a Self-Lipid by Human gamma delta T Cells. Immunity, 39, 2013
3NCU	Structural and functional insights into pattern recognition by the innate immune receptor RIG-I 分子名称: 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3', RIG-I, ZINC ION 著者 Sheng, G, Li, H. 登録日 2010-06-05 公開日 2010-06-30 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural and functional insights into 5'-ppp RNA pattern recognition by the innate immune receptor RIG-I. Nat.Struct.Mol.Biol., 17, 2010
3OXJ	crystal structure of glycine riboswitch, soaked in Ba2+ 分子名称: BARIUM ION, GLYCINE, MAGNESIUM ION, ... 著者 Huang, L, Serganov, A, Patel, D.J. 登録日 2010-09-21 公開日 2010-12-29 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
5AOX	Human Alu RNA retrotransposition complex in the ribosome-stalling conformation 分子名称: ACETATE ION, ALU JO CONSENSUS RNA, DI(HYDROXYETHYL)ETHER, ... 著者 Ahl, V, Weichenrieder, O. 登録日 2015-09-12 公開日 2015-11-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Retrotransposition and Crystal Structure of an Alu Rnp in the Ribosome-Stalling Conformation. Mol.Cell, 60, 2015
3ZD4	Full-Length Hammerhead Ribozyme with G12A substitution at the general base position 分子名称: HAMMERHEAD RIBOZYME, ENZYME STRAND, SUBSTRATE STRAND 著者 Scott, W.G, Schultz, E. 登録日 2012-11-24 公開日 2012-12-12 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural and Catalytic Effects of an Invariant Purine Substitution in the Hammerhead Ribozyme: Implications for the Mechanism of Acid-Base Catalysis. Acta Crystallogr.,Sect.D, 70, 2014
3ZP8	HIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYME 分子名称: HAMMERHEAD RIBOZYME, ENZYME STRAND, SUBSTRATE STRAND, ... 著者 Anderson, M, Schultz, E, Martick, M, Scott, W.G. 登録日 2013-02-26 公開日 2013-03-06 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Active-Site Monovalent Cations Revealed in a 1.55 A Resolution Hammerhead Ribozyme Structure J.Mol.Biol., 425, 2013
3ZD5	THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME 分子名称: HAMMERHEAD RIBOZYME, ENZYME STRAND, SUBSTRATE STRAND 著者 Martick, M, Scott, W.G. 登録日 2012-11-24 公開日 2012-12-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Tertiary contacts distant from the active site prime a ribozyme for catalysis. Cell, 126, 2006
3DIY	Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Mn2+ soak 分子名称: LYSINE, MANGANESE (II) ION, POTASSIUM ION, ... 著者 Serganov, A.A. 登録日 2008-06-21 公開日 2008-09-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature, 455, 2008
8HZD	A new fluorescent RNA aptamer bound with N618 分子名称: 4-[(~{E})-2-[(4~{Z})-4-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-1-methyl-5-oxidanylidene-imidazol-2-yl]ethenyl]benzenecarbonitrile, MAGNESIUM ION, RNA (36-MER) 著者 Song, Q.Q, Ren, A.M. 登録日 2023-01-09 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift. Nat.Chem.Biol., 2024
7EOH	Crystal structure of the Pepper aptamer in complex with HBC 分子名称: 4-[(~{Z})-1-cyano-2-[4-[2-hydroxyethyl(methyl)amino]phenyl]ethenyl]benzenecarbonitrile, MAGNESIUM ION, Pepper (49-MER) 著者 Huang, K.Y, Ren, A.M. 登録日 2021-04-22 公開日 2021-11-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.637 Å) 主引用文献 Structure-based investigation of fluorogenic Pepper aptamer. Nat.Chem.Biol., 17, 2021
7EOJ	Crystal structure of the Pepper aptamer in complex with HBC, cesium soak 分子名称: 4-[(~{Z})-1-cyano-2-[4-[2-hydroxyethyl(methyl)amino]phenyl]ethenyl]benzenecarbonitrile, CESIUM ION, MAGNESIUM ION, ... 著者 Huang, K.Y, Ren, A.M. 登録日 2021-04-22 公開日 2021-11-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Structure-based investigation of fluorogenic Pepper aptamer. Nat.Chem.Biol., 17, 2021
6XN9	Solution NMR structure of recifin, a cysteine-rich tyrosyl-DNA Phosphodiesterase I modulatory peptide from the marine sponge Axinella sp. 分子名称: Recifin modulatory peptide 著者 Schroeder, C.I, Rosengren, K.J, O'Keefe, B.R. 登録日 2020-07-02 公開日 2021-02-10 実験手法 SOLUTION NMR 主引用文献 Recifin A, Initial Example of the Tyr-Lock Peptide Structural Family, Is a Selective Allosteric Inhibitor of Tyrosyl-DNA Phosphodiesterase I. J.Am.Chem.Soc., 142, 2020
8XZK	Crystal structure of folE riboswitch 分子名称: RNA (53-MER) 著者 Li, C.Y, Ren, A.M. 登録日 2024-01-21 公開日 2024-07-24 最終更新日 2024-08-21 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Structure-based characterization and compound identification of the wild-type THF class-II riboswitch. Nucleic Acids Res., 52, 2024
1RYD	Crystal Structure of Glucose-Fructose Oxidoreductase from Zymomonas mobilis 分子名称: ACETATE ION, BETA-MERCAPTOETHANOL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... 著者 Kim, Y, Arora, M, Straza, M, Joachimiak, A. 登録日 2003-12-22 公開日 2005-02-15 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structure of Glucose-Fructose Oxidoreductase from Zymomonas mobilis To be Published
3OWI	Crystal structure of the glycine riboswitch bound to glycine 分子名称: Domain II of glycine riboswitch, GLYCINE, MAGNESIUM ION 著者 Huang, L, Serganov, A, Patel, D.J. 登録日 2010-09-19 公開日 2010-12-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.845 Å) 主引用文献 Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
3OXD	Crystal structure of glycine riboswitch with two mutations 分子名称: MAGNESIUM ION, domain II of glycine riboswitch 著者 Huang, L, Serganov, A, Patel, D.J. 登録日 2010-09-21 公開日 2010-12-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.999 Å) 主引用文献 Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
3OXE	crystal structure of glycine riboswitch, Mn2+ soaked 分子名称: GLYCINE, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Huang, L, Serganov, A, Patel, D.J. 登録日 2010-09-21 公開日 2010-12-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.899 Å) 主引用文献 Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
3OWZ	Crystal structure of glycine riboswitch, soaked in Iridium 分子名称: Domain II of glycine riboswitch, GLYCINE, IRIDIUM HEXAMMINE ION, ... 著者 Huang, L, Serganov, A, Patel, D.J. 登録日 2010-09-20 公開日 2010-12-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.949 Å) 主引用文献 Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010
3OXB	Crystal structure of glycine riboswitch with single mutation 分子名称: Domain II of glycine riboswitch, MAGNESIUM ION 著者 Huang, L, Serganov, A, Patel, D.J. 登録日 2010-09-21 公開日 2010-12-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.947 Å) 主引用文献 Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Mol.Cell, 40, 2010

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