Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6TBI
DownloadVisualize
BU of 6tbi by Molmil
Structure of a beta galactosidase with inhibitor
分子名称: (1S,2S,3S,6R)-4-(hydroxymethyl)-6-(octylamino)cyclohex-4-ene-1,2,3-triol, ACETATE ION, Beta-galactosidase, ...
著者Offen, W, Davies, G.
登録日2019-11-01
公開日2020-08-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Mechanistic Insights into the Chaperoning of Human Lysosomal-Galactosidase Activity: Highly Functionalized Aminocyclopentanes and C -5a-Substituted Derivatives of 4- epi -Isofagomine.
Molecules, 25, 2020
7QP9
DownloadVisualize
BU of 7qp9 by Molmil
Outward-facing apo-form of auxin transporter PIN8
分子名称: 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Auxin efflux carrier component 8
著者Ung, K.L, Winkler, M.B.L, Dedic, E, Stokes, D.L, Pedersen, B.P.
登録日2022-01-03
公開日2022-07-06
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (2.89 Å)
主引用文献Structures and mechanism of the plant PIN-FORMED auxin transporter.
Nature, 609, 2022
7LJJ
DownloadVisualize
BU of 7ljj by Molmil
Structure of the Exo-alpha-L-galactosidase BpGH29 from Bacteroides plebeius
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Exo-alpha-L-galactosidase
著者Robb, C.S, Boraston, A.B.
登録日2021-01-29
公開日2022-02-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Nat.Chem.Biol., 18, 2022
8EXL
DownloadVisualize
BU of 8exl by Molmil
Crystal structure of PI3K-alpha in complex with taselisib
分子名称: 2-methyl-2-(4-{2-[3-methyl-1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-1H-pyrazol-1-yl)propanamide, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
著者Kiefer, J.R, Eigenbrot, C, Staben, S.T, Hanan, E.J, Wallweber, H.J.A, Ultsch, M, Braun, M.G, Friedman, L.S, Purkey, H.E.
登録日2022-10-25
公開日2022-11-30
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.989 Å)
主引用文献Discovery of GDC-0077 (Inavolisib), a Highly Selective Inhibitor and Degrader of Mutant PI3K alpha.
J.Med.Chem., 65, 2022
6Y4U
DownloadVisualize
BU of 6y4u by Molmil
Crystal structure of p38 in complex with SR65
分子名称: 1,2-ETHANEDIOL, 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-oxidanylidene-1-(pentan-3-ylamino)butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide, Mitogen-activated protein kinase 14
著者Chaikuad, A, Roehm, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
登録日2020-02-23
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Selective targeting of the alpha C and DFG-out pocket in p38 MAPK.
Eur.J.Med.Chem., 208, 2020
9N1U
DownloadVisualize
BU of 9n1u by Molmil
High-resolution crystal structure of 2,3-diamino propanoic acid bound adenylation domain (A3) from Sulfazecin nonribosomal peptide synthetase SulM
分子名称: 1,2-ETHANEDIOL, DIAMINOPROPANOIC ACID, Non-ribosomal peptide synthetase
著者Patel, K.D, Gulick, A.M.
登録日2025-01-27
公開日2025-05-28
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献l-2,3-Diaminopropionate Binding Mode of the SulM Adenylation Domain Limits Engineering Monobactam Analogue Biosynthesis with Larger Substrates.
Jacs Au, 5, 2025
6Y4T
DownloadVisualize
BU of 6y4t by Molmil
Crystal structure of p38 in complex with SR63.
分子名称: 1,2-ETHANEDIOL, 5-azanyl-~{N}-[[4-[[(2~{S})-1-[[(2~{S})-butan-2-yl]amino]-4-cyclohexyl-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide, Mitogen-activated protein kinase 14
著者Chaikuad, A, Roehm, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
登録日2020-02-23
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Selective targeting of the alpha C and DFG-out pocket in p38 MAPK.
Eur.J.Med.Chem., 208, 2020
9HJM
DownloadVisualize
BU of 9hjm by Molmil
Porphyromonas gingivalis BAM complex
分子名称: (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, DUF4270 domain-containing protein, DUF4827 domain-containing protein, ...
著者Madej, M, Silale, A, van den Berg, B.
登録日2024-11-29
公開日2025-11-19
実験手法ELECTRON MICROSCOPY (3.24 Å)
主引用文献Structure of a distinct beta-barrel assembly machinery complex in the Bacteroidota.
Nat Microbiol, 10, 2025
6Y53
DownloadVisualize
BU of 6y53 by Molmil
human 17S U2 snRNP low resolution part
分子名称: HIV Tat-specific factor 1, Probable ATP-dependent RNA helicase DDX46, Small nuclear ribonucleoprotein E, ...
著者Zhang, Z, Will, C.L, Bertram, K, Luehrmann, R, Stark, H.
登録日2020-02-24
公開日2020-06-17
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (7.1 Å)
主引用文献Molecular architecture of the human 17S U2 snRNP.
Nature, 583, 2020
7YRY
DownloadVisualize
BU of 7yry by Molmil
F1-ATPase of Acinetobacter baumannii
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Saw, W.-G, Grueber, G.
登録日2022-08-11
公開日2023-06-21
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Atomic insights of an up and down conformation of the Acinetobacter baumannii F 1 -ATPase subunit epsilon and deciphering the residues critical for ATP hydrolysis inhibition and ATP synthesis.
Faseb J., 37, 2023
6VFE
DownloadVisualize
BU of 6vfe by Molmil
Gasdermin D pore
分子名称: Gasdermin-D, N-terminal
著者Xia, S, Ruan, J, Wu, H.
登録日2020-01-03
公開日2021-04-21
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Gasdermin D pore structure reveals preferential release of mature interleukin-1.
Nature, 593, 2021
7LK7
DownloadVisualize
BU of 7lk7 by Molmil
Structure of the Exo-alpha-L-galactosidase BpGH29 from Bacteroides plebeius in complex with L-galactose
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Exo-alpha-L-galactosidase, ...
著者Boraston, A.B, Robb, C.S.
登録日2021-02-01
公開日2022-02-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Nat.Chem.Biol., 18, 2022
8CHE
DownloadVisualize
BU of 8che by Molmil
TLT-1 binding Fab of the bispecific antibody HMB-001 in complex with the TLT-1 stalk peptide
分子名称: Fab heavy chain, Fab light chain, Trem-like transcript 1 protein
著者Johansson, E, Schluckebier, G.
登録日2023-02-07
公開日2023-12-27
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献A bispecific antibody approach for the potential prophylactic treatment of inherited bleeding disorders.
Nat Cardiovasc Res, 3, 2024
8Q7B
DownloadVisualize
BU of 8q7b by Molmil
ABCG2 in complex with MZ29 and 5D3 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5D3(Fab) heavy chain variable domain, 5D3(Fab) light chain variable domain, ...
著者Kowal, J, Yu, Q, Ni, D, Stahlberg, H, Tajkhorshid, E, Altmann, K.H, Locher, K.P, Manolaridis, I, Jackson, S.M, Taylor, N.M.I, Zechner, M.
登録日2023-08-16
公開日2024-11-06
最終更新日2024-11-27
実験手法ELECTRON MICROSCOPY (2.56 Å)
主引用文献Modulation of ABCG2 Transporter Activity by Ko143 Derivatives.
Acs Chem.Biol., 19, 2024
8SUN
DownloadVisualize
BU of 8sun by Molmil
TMEM16F 1PBC
分子名称: 1-Hydroxy-3-(trifluoromethyl)pyrido[1,2-a]benzimidazole-4-carbonitrile, 2-acetamido-2-deoxy-beta-D-glucopyranose, Anoctamin-6, ...
著者Wu, H, Feng, S, Cheng, Y.
登録日2023-05-12
公開日2023-10-11
最終更新日2024-12-25
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Identification of a drug binding pocket in TMEM16F calcium-activated ion channel and lipid scramblase.
Nat Commun, 14, 2023
9NYO
DownloadVisualize
BU of 9nyo by Molmil
Clostridium acetobutylicum alcohol dehydrogenase bound to NADP+, disordered nicotinamide
分子名称: 1,2-ETHANEDIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Oxidoreductase
著者Madzelan, P, Wilson, M.A.
登録日2025-03-28
公開日2025-07-02
最終更新日2025-09-10
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Is a Malleable Active Site Loop the Key to High Substrate Promiscuity? Hybrid, Biocatalytic Route to Structurally Diverse Taxoid Side Chains with Remarkable Dual Stereocontrol.
Angew.Chem.Int.Ed.Engl., 64, 2025
6VF4
DownloadVisualize
BU of 6vf4 by Molmil
DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)
分子名称: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Jamsen, J.A, Wilson, S.H.
登録日2020-01-03
公開日2021-09-01
最終更新日2025-09-03
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis for proficient oxidized ribonucleotide insertion in double strand break repair.
Nat Commun, 12, 2021
6KF1
DownloadVisualize
BU of 6kf1 by Molmil
Microbial Hormone-sensitive lipase- E53 mutant S162A
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HEXANOIC ACID, ...
著者Xiaochen, Y, Zhengyang, L, Xuewei, X, Jixi, L.
登録日2019-07-05
公開日2020-07-08
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.996 Å)
主引用文献Functional and Structural Insights into Environmental Adaptation of a Novel Hormone-sensitive Lipase, E53, Obtained from Erythrobacter longus
To Be Published
8C11
DownloadVisualize
BU of 8c11 by Molmil
BRD4 in complex with 2-(2-(4-(3,5-dimethylisoxazol-4-yl)-1H-pyrazol-1-yl)acetamido)-N-ethylpropanamide
分子名称: (2~{S})-2-[2-[4-(3,5-dimethyl-1,2-oxazol-4-yl)pyrazol-1-yl]ethanoylamino]-~{N}-ethyl-propanamide, Bromodomain-containing protein 4
著者Martin, M.P, Noble, M.E.N.
登録日2022-12-19
公開日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献BRD4 complex with compound 22
To Be Published
4QPE
DownloadVisualize
BU of 4qpe by Molmil
Crystal structure of Aminopeptidase N in complex with N-cyclohexyl-1,2-diaminoethylphosphonic acid
分子名称: Aminopeptidase N, SULFATE ION, ZINC ION, ...
著者Nocek, B, Mulligan, R, Berlicki, L, Vassilious, S, Mucha, A, Joachimiak, A.
登録日2014-06-23
公開日2014-09-24
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献Structure-guided, single-point modifications in the phosphinic dipeptide structure yield highly potent and selective inhibitors of neutral aminopeptidases.
J.Med.Chem., 57, 2014
8QM9
DownloadVisualize
BU of 8qm9 by Molmil
Potential drug binding sites for translation initiation factor eIF4E
分子名称: (2~{R})-2-[(1~{S})-1-[4-(2-fluorophenyl)-2-(2-hydroxyethylamino)phenyl]propoxy]propan-1-ol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
著者Cleasby, A.
登録日2023-09-21
公開日2025-01-15
最終更新日2025-03-12
実験手法X-RAY DIFFRACTION (1.973 Å)
主引用文献Integrating fragment-based screening with targeted protein degradation and genetic rescue to explore eIF4E function.
Nat Commun, 15, 2024
6VFB
DownloadVisualize
BU of 6vfb by Molmil
DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min)
分子名称: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Jamsen, J.A, Wilson, S.H.
登録日2020-01-03
公開日2021-09-01
最終更新日2025-09-03
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis for proficient oxidized ribonucleotide insertion in double strand break repair.
Nat Commun, 12, 2021
7T4T
DownloadVisualize
BU of 7t4t by Molmil
Crystal Structure of cGMP-dependent Protein Kinase
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ...
著者Zebisch, M, Silvestre, L, Fischmann, T.O.
登録日2021-12-10
公開日2023-06-14
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Selective small molecule activation of PKG1alpha: structure and function
Commun Biol, 2023
6VHJ
DownloadVisualize
BU of 6vhj by Molmil
Solution NMR of Prochlorosin 1.1 produced by Prochlorococcus MIT 9313
分子名称: Prochlorosin 1.1
著者Bobeica, S.C, van der Donk, W.A, Tang, W.
登録日2020-01-09
公開日2020-07-08
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways.
Chem Sci, 11, 2020
8EU8
DownloadVisualize
BU of 8eu8 by Molmil
Cryo-EM structure of CH848 10.17DT DS-SOSIP-2P Env
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CH848 10.17DT SOSIP Envelope glycoprotein gp160
著者Wrapp, D, Acharya, P, Haynes, B.F.
登録日2022-10-18
公開日2023-01-04
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Structure-Based Stabilization of SOSIP Env Enhances Recombinant Ectodomain Durability and Yield.
J.Virol., 97, 2023

245396

件を2025-11-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon