PDB: 45459 件ウェブページステータス検索Chemie searchBIRD

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5U9A	Crystal structure of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) 分子名称: Aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) 著者 Yadav, R.P, Gakhar, L, Liping, Y, Artemyev, N.O. 登録日 2016-12-15 公開日 2017-07-26 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Unique structural features of the AIPL1-FKBP domain that support prenyl lipid binding and underlie protein malfunction in blindness. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7W7C	Heme exporter in the unliganded form 分子名称: Putative ABC transport system integral membrane protein, Putative ABC transport system, ATP-binding protein, ... 著者 Rahman, M.M, Hisano, T, Nakamura, H, Tosha, T, Shirouzu, M, Shiro, Y. 登録日 2021-12-04 公開日 2022-06-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for heme detoxification by an ATP-binding cassette-type efflux pump in gram-positive pathogenic bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
7KIP	A 3.4 Angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Zhang, K, Li, S, Pintilie, G, Chmielewski, D, Schmid, M, Simmons, G, Jin, J, Chiu, W. 登録日 2020-10-24 公開日 2020-11-11 実験手法 ELECTRON MICROSCOPY (3.39 Å) 主引用文献 A 3.4- angstrom cryo-EM structure of the human coronavirus spike trimer computationally derived from vitrified NL63 virus particles. Biorxiv, 2020
5U5L	X-ray Crystal Structure of the PPARgamma Ligand Binding Domain in Complex with Rivoglitazone 分子名称: (5S)-5-({4-[(6-methoxy-1-methyl-1H-benzimidazol-2-yl)methoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione, Peroxisome proliferator-activated receptor gamma 著者 Bruning, J.B, Rajapaksha, H, Wegener, K, Bhatia, H. 登録日 2016-12-06 公開日 2017-08-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 X-ray crystal structure of rivoglitazone bound to PPAR gamma and PPAR subtype selectivity of TZDs. Biochim. Biophys. Acta, 1861, 2017
5TOI	Crystal Structure of the Marburg Virus VP35 Oligomerization Domain P4222 分子名称: Polymerase cofactor VP35 著者 Bruhn, J.F, Tickle, I.J, Bricogne, G, Saphire, E.O. 登録日 2016-10-17 公開日 2016-11-09 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Crystal Structure of the Marburg Virus VP35 Oligomerization Domain. J. Virol., 91, 2017
7W6Z	Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P21 分子名称: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, ZINC ION, Zinc metalloprotease 著者 Imaizumi, Y, Takanuki, K, Nogi, T. 登録日 2021-12-02 公開日 2022-09-07 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
7KQO	Crystal structure of SARS-CoV-2 NSP3 macrodomain (P43 crystal form) 分子名称: Non-structural protein 3 著者 Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S. 登録日 2020-11-17 公開日 2020-12-09 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (0.85 Å) 主引用文献 Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Sci Adv, 7, 2021
7W70	Crystal structure of the PDZ-C domain fragment of Kangiella koreensis RseP orthologue 分子名称: Zinc metalloprotease 著者 Miyoshi, K, Nogi, T. 登録日 2021-12-02 公開日 2022-09-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
7W6X	Crystal structure of E. coli RseP in complex with batimastat 分子名称: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Regulator of sigma-E protease RseP, ZINC ION 著者 Takanuki, K, Imaizumi, Y, Nogi, T. 登録日 2021-12-02 公開日 2022-09-07 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
7W6Y	Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P1 分子名称: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Anti sigma-E protein, RseA, ... 著者 Imaizumi, Y, Takanuki, K, Nogi, T. 登録日 2021-12-02 公開日 2022-09-07 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
5UAE	Crystal structure of the coiled-coil domain from Listeria Innocua Phage Integrase (Trigonal Form) 分子名称: CITRATE ANION, Putative integrase 著者 Gupta, K, Sharp, R, Yuan, J.B, Van Duyne, G.D. 登録日 2016-12-19 公開日 2017-05-24 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Coiled-coil interactions mediate serine integrase directionality. Nucleic Acids Res., 45, 2017
5UDO	Crystal structure of the coiled-coil domain from Listeria Innocua Phage Integrase (Tetragonal Form II) 分子名称: A118 serine integrase 著者 Gupta, K, Yuan, J.B, Sharp, R, Van Duyne, G.D. 登録日 2016-12-28 公開日 2017-06-07 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.541 Å) 主引用文献 Coiled-coil interactions mediate serine integrase directionality. Nucleic Acids Res., 45, 2017
7W6M	Cryo-EM map of PEDV (Pintung 52) S protein with all three protomers in the D0-down conformation determined in situ on intact viral particles. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Hsu, S.T.D, Draczkowski, P, Wang, Y.S. 登録日 2021-12-02 公開日 2022-08-03 最終更新日 2022-09-14 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM. Nat Commun, 13, 2022
5U9I	Crystal structure of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) complexed with S-farnesyl-L-cysteine methyl ester 分子名称: Aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1), FARNESYL 著者 Yadav, R.P, Gakhar, L, Liping, Y, Artemyev, N.O. 登録日 2016-12-16 公開日 2017-07-26 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Unique structural features of the AIPL1-FKBP domain that support prenyl lipid binding and underlie protein malfunction in blindness. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7W73	Cryo-EM map of PEDV S protein with one protomer in the D0-up conformation while the other two in the D0-down conformation 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Hsu, S.T.D, Draczkowski, P, Wang, Y.S. 登録日 2021-12-03 公開日 2022-08-03 最終更新日 2022-12-21 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM. Nat Commun, 13, 2022
5U1H	Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa 分子名称: (2R,6S)-2-amino-6-(carboxyamino)-7-{[(1R)-1-carboxyethyl]amino}-7-oxoheptanoic acid, ACETATE ION, CHLORIDE ION, ... 著者 Watanabe, N, Stogios, P.J, Skarina, T, Wawrzak, Z, Di Leo, R, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2016-11-28 公開日 2017-01-11 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa To be published
7VZS	FAD-dpendent Glucose Dehydrogenase complexed with an inhibitor at pH7.56 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, D-glucal, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Nakajima, Y. 登録日 2021-11-16 公開日 2022-11-16 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5 To Be Published
5U6R	E. coli CTP synthase CC mutant filament (product-bound) 分子名称: ADENOSINE-5'-DIPHOSPHATE, CTP synthase, CYTIDINE-5'-TRIPHOSPHATE 著者 Kollman, J.M, Lynch, E.M. 登録日 2016-12-08 公開日 2017-04-26 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Human CTP synthase filament structure reveals the active enzyme conformation. Nat. Struct. Mol. Biol., 24, 2017
5U9L	Crystal structure of the intermembrane space region of the plastid division protein PARC6 分子名称: MAGNESIUM ION, PARALOG OF ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 (PARC6) 著者 Delmar, J.D, Chou, T.H. 登録日 2016-12-16 公開日 2017-12-20 実験手法 X-RAY DIFFRACTION (2.516 Å) 主引用文献 Cocrystal structure of the intermembrane space region of the plastid division proteins PARC6 and PDV1 To Be Published
7VZP	FAD-dpendent Glucose Dehydrogenase from Aspergillus oryzae 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GMC oxidoreductase, PENTAETHYLENE GLYCOL 著者 Nakajima, Y. 登録日 2021-11-16 公開日 2022-11-16 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5 To Be Published
5UG7	Calcium bound Perforin C2 Domain - T431D 分子名称: CALCIUM ION, Perforin-1 著者 Law, R.H.P, Conroy, P.J, Voskoboinik, I, Whisstock, J.C. 登録日 2017-01-07 公開日 2018-02-07 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Perforin proteostasis is regulated through its C2 domain: supra-physiological cell death mediated by T431D-perforin. Cell Death Differ., 25, 2018
7W1Q	The structure of the Arabidopsis thaliana guanosine deaminase mutant E82Q complexed with 2'-O-methylguanosine 分子名称: Guanosine deaminase, O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE, ZINC ION 著者 Xie, W, Jia, Q, Zeng, H. 登録日 2021-11-19 公開日 2022-11-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Substrate Specificity of GSDA Revealed by Cocrystal Structures and Binding Studies. Int J Mol Sci, 23, 2022
7L04	Crystal Structure of Adeno-Associated Virus Porcine Origin capsid protein in complex with Importin-alpha 2 分子名称: Importin subunit alpha-1, VP1 著者 Hoad, M, Forwood, J. 登録日 2020-12-11 公開日 2021-02-24 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Crystal Structure of Adeno-Associated Virus Porcine Origin capsid protein in complex with Importin-alpha 2 To Be Published
5TR5	Solution structure of Serine 65 phosphorylated UBL domain from parkin 分子名称: E3 ubiquitin-protein ligase parkin 著者 Aguirre, J.D, Dunkerley, K.M, Mercier, P, Shaw, G.S. 登録日 2016-10-25 公開日 2016-12-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Structure of phosphorylated UBL domain and insights into PINK1-orchestrated parkin activation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7W9N	THE STRUCTURE OF OBA33-OTA COMPLEX 分子名称: (2~{S})-2-[[(3~{R})-5-chloranyl-3-methyl-8-oxidanyl-1-oxidanylidene-3,4-dihydroisochromen-7-yl]carbonylamino]-3-phenyl-propanoic acid, OTA DNA APTAMER (33-MER) 著者 Xu, G.H, Li, C.G. 登録日 2021-12-10 公開日 2022-01-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Insights into the Mechanism of High-Affinity Binding of Ochratoxin A by a DNA Aptamer. J.Am.Chem.Soc., 144, 2022

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