PDB: 223532 件ウェブページステータス検索Chemie searchBIRD

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3BS1	Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding 分子名称: Accessory gene regulator protein A, DNA (5'-D(*DAP*DAP*(BRU)P*DAP*DCP*DTP*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DTP*DAP*DAP*DCP*DAP*DGP*DTP*DTP*DAP*DAP*DGP*(BRU)P*DAP*DT)-3'), ... 著者 Sidote, D.J, Barbieri, C, Wu, T, Stock, A.M. 登録日 2007-12-21 公開日 2008-04-08 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with an Unusual Mode of Binding. Structure, 16, 2008
3BTJ	crystal structure of QacR(E58Q) bound to dequalinium 分子名称: DEQUALINIUM, HTH-type transcriptional regulator qacR, SULFATE ION 著者 Schumacher, M.A, Schuman, J.T, Brennan, R.G. 登録日 2007-12-28 公開日 2008-08-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization Biochemistry, 47, 2008
3BTC	crystal structure of QacR(E57Q) bound to malachite green 分子名称: HTH-type transcriptional regulator qacR, MALACHITE GREEN, SULFATE ION 著者 Schumacher, M.A, Schuman, J.T, Brennan, R.G. 登録日 2007-12-28 公開日 2008-08-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization Biochemistry, 47, 2008
3BTZ	Crystal structure of human ABH2 cross-linked to dsDNA 分子名称: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA (5'-D(*AP*GP*GP*TP*GP*AP*(2YR)P*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DTP*DTP*DAP*DTP*DCP*DAP*DCP*DC)-3') 著者 Yang, C.-G, Yi, C, He, C. 登録日 2007-12-31 公開日 2008-04-22 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature, 452, 2008
3BUC	X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KG 分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA (5'-D(*DCP*DTP*DGP*DTP*DAP*DTP*(MA7)P*DAP*DCP*DTP*DGP*DCP*DG)-3'), ... 著者 Yang, C.-G, Yi, C, He, C. 登録日 2008-01-02 公開日 2008-04-22 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature, 452, 2008
3BWC	Crystal structure of spermidine synthase from Trypanosoma cruzi in complex with SAM at 2.3 A resolution 分子名称: BETA-MERCAPTOETHANOL, S-ADENOSYLMETHIONINE, Spermidine synthase 著者 Bosch, J, Arakaki, T.L, Le Trong, I, Merritt, E.A, Hol, W.G.J, Structural Genomics of Pathogenic Protozoa Consortium (SGPP) 登録日 2008-01-09 公開日 2008-04-01 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of spermidine synthase from Trypanosoma cruzi. To be Published
3BWQ	Structure of free SV40 VP1 pentamer 分子名称: Capsid protein VP1 著者 Neu, U, Stehle, T. 登録日 2008-01-10 公開日 2008-03-04 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis of GM1 ganglioside recognition by simian virus 40. Proc.Natl.Acad.Sci.Usa, 105, 2008
5IZA	Protein-protein interaction 分子名称: ACE-GLY-GLY-GLU-ALA-LEU-ALA-TRP-NH2, Adenomatous polyposis coli protein 著者 Zhao, Y, Jiang, H, Yang, X, Jiang, F, Song, K, Zhang, J. 登録日 2016-03-25 公開日 2017-07-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Peptidomimetic inhibitors of APC-Asef interaction block colorectal cancer migration. Nat. Chem. Biol., 13, 2017
3BXY	Crystal structure of tetrahydrodipicolinate N-succinyltransferase from E. coli 分子名称: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 著者 Kozlov, G, Gehring, K, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) 登録日 2008-01-15 公開日 2008-01-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of Escherichia coli tetrahydrodipicolinate N-succinyltransferase reveals the role of a conserved C-terminal helix in cooperative substrate binding. Febs Lett., 582, 2008
3BVA	Cystal structure of HIV-1 Active Site Mutant D25N and p2-NC analog inhibitor 分子名称: GLYCEROL, N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide, Protease (Retropepsin) 著者 Liu, F, Weber, I.T. 登録日 2008-01-05 公開日 2008-04-01 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 Effect of the Active Site D25N Mutation on the Structure, Stability, and Ligand Binding of the Mature HIV-1 Protease. J.Biol.Chem., 283, 2008
5IZS	De novo design of protein homo-oligomers with modular hydrogen bond network-mediated specificity 分子名称: Designed protein 5L6HC3_1 著者 Sankaran, B, Zwart, P.H, Pereira, J.H, Baker, D, Boyken, S, Chen, Z, Oberdorfer, G. 登録日 2016-03-25 公開日 2016-05-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity. Science, 352, 2016
3BVN	High resolution crystal structure of HLA-B*1402 in complex with the latent membrane protein 2 peptide (LMP2) of Epstein-Barr virus 分子名称: Beta-2-microglobulin, HLA class I histocompatibility antigen, B*1402 alpha chain, ... 著者 Kumar, P, Vahedi-Faridi, A, Saenger, W, Uchanska-Ziegler, B, Ziegler, A. 登録日 2008-01-07 公開日 2009-02-03 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens J.Biol.Chem., 284, 2009
5XN8	Structure of glycerol dehydrogenase crystallised as a contaminant 分子名称: GLYCEROL, Glycerol Dehydrogenase, ZINC ION 著者 Hatti, K, Mathiharan, Y.K, Srinivasan, N, Murthy, M.R.N. 登録日 2017-05-19 公開日 2017-06-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 Seeing but not believing: the structure of glycerol dehydrogenase initially assumed to be the structure of a survival protein from Salmonella typhimurium Acta Crystallogr.,Sect.D, 73, 2017
5J0H	De novo design of protein homo-oligomers with modular hydrogen bond network-mediated specificity 分子名称: Design construct 2L6HC3_13 著者 Sankaran, B, Zwart, P.H, Pereira, J.H, Baker, D, Boyken, S, Chen, Z, Groves, B, Langan, R.A, Oberdorfer, G, Ford, A, Gilmore, J, Xu, C, DiMaio, F, Seelig, G. 登録日 2016-03-28 公開日 2016-05-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity. Science, 352, 2016
3BW4	Crystal structures and site-directed mutagenesis study of nitroalkane oxidase from Streptomyces ansochromogenes 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-nitropropane dioxygenase, FLAVIN MONONUCLEOTIDE 著者 Li, Y.H, Gao, Z.Q, Hou, H.F. 登録日 2008-01-08 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structures and site-directed mutagenesis study of nitroalkane oxidase from Streptomyces ansochromogenes To be Published
5XJJ	Crystal structure of a MATE family protein 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, multi drug efflux transporter 著者 Tanaka, Y, Tsukazaki, T, Iwaki, S. 登録日 2017-05-02 公開日 2017-09-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein Structure, 25, 2017
6F4Q	Human JMJD5 (Q275C) in complex with Mn(II), NOG and RPS6-A138C (129-144) (complex-2) 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 40S ribosomal protein S6, GLYCEROL, ... 著者 Chowdhury, R, Islam, M.S, Schofield, C.J. 登録日 2017-11-29 公開日 2018-04-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.12 Å) 主引用文献 JMJD5 is a human arginyl C-3 hydroxylase. Nat Commun, 9, 2018
5J0K	De novo design of protein homo-oligomers with modular hydrogen bond network-mediated specificity 分子名称: designed protein 2L4HC2_23 著者 Sankaran, B, Zwart, P.H, Pereira, J.H, Baker, D, Boyken, S, Chen, Z, Groves, B, Langan, R.A, Oberdorfer, G, Ford, A, Gilmore, J, Xu, C, DiMaio, F, Seelig, G. 登録日 2016-03-28 公開日 2016-05-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity. Science, 352, 2016
3C13	Low pH-value crystal structure of emodin in complex with the catalytic subunit of protein kinase CK2 分子名称: 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE, CHLORIDE ION, Casein kinase II subunit alpha 著者 Niefind, K, Raaf, J, Issinger, O.-G. 登録日 2008-01-22 公開日 2008-02-12 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The Catalytic Subunit of Human Protein Kinase CK2 Structurally Deviates from Its Maize Homologue in Complex with the Nucleotide Competitive Inhibitor Emodin J.Mol.Biol., 377, 2008
6VZI	Crystal Structure of HIV-1 CAP256 RnS-3mut-2G-SOSIP.664 Prefusion Env Trimer in Complex with Human Antibodies 3H109L and 35O22 at 3.5 Angstrom 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 scFv heavy chain, ... 著者 Lai, Y.-T, Kwong, P.D. 登録日 2020-02-28 公開日 2020-04-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.716 Å) 主引用文献 Development of a 3Mut-Apex-Stabilized Envelope Trimer That Expands HIV-1 Neutralization Breadth When Used To Boost Fusion Peptide-Directed Vaccine-Elicited Responses. J.Virol., 94, 2020
5J3D	Crystal structure of human Fab 14N4 in complex with post-fusion RSV F 分子名称: 14N4 heavy chain, 14N4 light chain, Fusion glycoprotein F0 著者 Mousa, J.J, Crowe, J.E. 登録日 2016-03-30 公開日 2016-10-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4.077 Å) 主引用文献 Structural basis for nonneutralizing antibody competition at antigenic site II of the respiratory syncytial virus fusion protein. Proc.Natl.Acad.Sci.USA, 113, 2016
3BYH	Model of actin-fimbrin ABD2 complex 分子名称: Actin, fimbrin ABD2 著者 Galkin, V.E, Orlova, A, Cherepanova, O, Lebart, M.C, Egelman, E.H. 登録日 2008-01-16 公開日 2008-02-19 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (12 Å) 主引用文献 High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex. Proc.Natl.Acad.Sci.Usa, 105, 2008
3BZH	Crystal structure of human ubiquitin-conjugating enzyme E2 E1 分子名称: GLYCEROL, Ubiquitin-conjugating enzyme E2 E1 著者 Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) 登録日 2008-01-18 公開日 2008-02-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Mol Cell Proteomics, 11, 2012
5IWJ	LAmbda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGGCCCGG 分子名称: BARIUM ION, DNA (5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'), Ru(tap)2(dppz) complex 著者 Souter, J.E, Hall, J.P, Cardin, C.J. 登録日 2016-03-22 公開日 2017-04-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 The binding specificity of RuTAP2dppz To Be Published
5IWM	2.5A structure of GSK945237 with S.aureus DNA gyrase and DNA. 分子名称: (1R)-1-[(4-{[(6,7-dihydro[1,4]dioxino[2,3-c]pyridazin-3-yl)methyl]amino}piperidin-1-yl)methyl]-9-fluoro-1,2-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-4-one, DNA (5'-D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*TP*TP*CP*AP*CP*CP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*GP*GP*TP*GP*AP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), ... 著者 Bax, B.D, Miles, T.J. 登録日 2016-03-22 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Novel tricyclics (e.g., GSK945237) as potent inhibitors of bacterial type IIA topoisomerases. Bioorg.Med.Chem.Lett., 26, 2016

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