Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3UDR
DownloadVisualize
BU of 3udr by Molmil
Crystal Structure of BACE with Compound 14
分子名称: 1,2-ETHANEDIOL, 1-cyanocyclohexyl (3S,5'R)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxylate, Beta-secretase 1, ...
著者Efremov, I.V, Vajdos, F.F, Borzilleri, K, Capetta, S, Dorff, P, Dutra, J, Mansour, M, Oborski, C, O'Connell, T, O'Sullivan, T.J, Pandit, J, Wang, H, Withka, J.
登録日2011-10-28
公開日2012-04-18
最終更新日2018-04-04
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Discovery and optimization of a novel spiropyrrolidine inhibitor of {beta}-secretase (BACE1) through fragment-based drug design.
J.Med.Chem., 55, 2012
6DRD
DownloadVisualize
BU of 6drd by Molmil
RNA Pol II(G)
分子名称: DNA-directed RNA polymerase II subunit GRINL1A, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ...
著者Yu, X, Jishage, M, Shi, Y, Ganesan, S, Sali, A, Chait, B.T, Asturias, F, Roeder, R.G.
登録日2018-06-11
公開日2019-06-12
最終更新日2019-12-04
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1.
Nat. Struct. Mol. Biol., 25, 2018
1MUH
DownloadVisualize
BU of 1muh by Molmil
CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNA
分子名称: DNA NON-TRANSFERRED STRAND, DNA TRANSFERRED STRAND, MAGNESIUM ION, ...
著者Thoden, J.B, Holden, H.M, Davies, D.R, Goryshin, I.Y, Reznikoff, W.S, Rayment, I.
登録日2002-09-23
公開日2002-09-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Three-dimensional structure of the Tn5 synaptic complex transposition intermediate.
Science, 289, 2000
3UEO
DownloadVisualize
BU of 3ueo by Molmil
Crystal structure of TopBP1 BRCT4/5 domains in complex with a phospho-peptide
分子名称: DNA topoisomerase 2-binding protein 1, phospho-peptide
著者Leung, C.C, Glover, J.N.M.
登録日2011-10-31
公開日2013-07-03
最終更新日2014-03-26
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural insights into recognition of MDC1 by TopBP1 in DNA replication checkpoint control.
Structure, 21, 2013
6DHH
DownloadVisualize
BU of 6dhh by Molmil
RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.2 Angstrom resolution
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K.
登録日2018-05-20
公開日2018-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of the intermediates of Kok's photosynthetic water oxidation clock.
Nature, 563, 2018
2G37
DownloadVisualize
BU of 2g37 by Molmil
Structure of Thermus thermophilus L-proline dehydrogenase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
著者Tanner, J.J, White, T.A.
登録日2006-02-17
公開日2007-02-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and Kinetics of Monofunctional Proline Dehydrogenase from Thermus thermophilus.
J.Biol.Chem., 282, 2007
3UMC
DownloadVisualize
BU of 3umc by Molmil
Crystal Structure of the L-2-Haloacid Dehalogenase PA0810
分子名称: CHLORIDE ION, SODIUM ION, haloacid dehalogenase
著者Petit, P, Chan, P.W.Y, Savchenko, A, Yakunin, A.F, Edwards, E.A, Pai, E.F.
登録日2011-11-13
公開日2012-11-14
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural adaptations of L-2-haloacid dehalogenases that enable hydrolytic defluorination
To be Published
6D9K
DownloadVisualize
BU of 6d9k by Molmil
Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*GP*GP*CP*AP*GP*TP*AP*AP*C)-3'), ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-30
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
1MVQ
DownloadVisualize
BU of 1mvq by Molmil
Cratylia mollis lectin (isoform 1) in complex with methyl-alpha-D-mannose
分子名称: CALCIUM ION, MANGANESE (II) ION, lectin, ...
著者de Souza, G.A, Oliveira, P.S, Trapani, S, Correia, M.T, Oliva, G, Coelho, L.C, Greene, L.J.
登録日2002-09-26
公開日2003-10-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Amino acid sequence and tertiary structure of Cratylia mollis seed lectin
Glycobiology, 13, 2003
1MYZ
DownloadVisualize
BU of 1myz by Molmil
CO COMPLEX OF MYOGLOBIN MB-YQR AT RT SOLVED FROM LAUE DATA.
分子名称: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Bourgeois, D, Vallone, B, Schotte, F, Arcovito, A, Miele, A.E, Sciara, G, Wulff, M, Anfinrud, P, Brunori, M.
登録日2002-10-04
公開日2003-08-19
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography.
Proc.Natl.Acad.Sci.USA, 100, 2003
4OH2
DownloadVisualize
BU of 4oh2 by Molmil
Crystal Structure of Cu/Zn Superoxide Dismutase I149T
分子名称: COPPER (II) ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Crane, B.R, Merz, G.E.
登録日2014-01-16
公開日2014-10-15
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.384 Å)
主引用文献Copper-Based Pulsed Dipolar ESR Spectroscopy as a Probe of Protein Conformation Linked to Disease States.
Biophys.J., 107, 2014
1MTJ
DownloadVisualize
BU of 1mtj by Molmil
PHE46(CD4) ORIENTS THE DISTAL HISTIDINE FOR HYDROGEN BONDING TO BOUND LIGANDS IN SPERM WHALE MYOGLOBIN
分子名称: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Li, T, Phillips Jr, G.N.
登録日1994-12-12
公開日1995-09-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Phe-46(CD4) orients the distal histidine for hydrogen bonding to bound ligands in sperm whale myoglobin.
Proteins, 22, 1995
4ON3
DownloadVisualize
BU of 4on3 by Molmil
Crystal structure of human sorting nexin 10 (SNX10)
分子名称: NITRATE ION, PENTAETHYLENE GLYCOL, SODIUM ION, ...
著者Xu, T, Xu, J, Wang, Q, Liu, J.
登録日2014-01-28
公開日2014-09-24
最終更新日2014-12-03
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of human SNX10 reveals insights into its role in human autosomal recessive osteopetrosis.
Proteins, 82, 2014
2YGY
DownloadVisualize
BU of 2ygy by Molmil
Structure of wild type E. coli N-acetylneuraminic acid lyase in space group P21 crystal form II
分子名称: CHLORIDE ION, N-ACETYLNEURAMINATE LYASE, PENTAETHYLENE GLYCOL
著者Campeotto, I, Nelson, A, Berry, A, Phillips, S.E.V, Pearson, A.R.
登録日2011-04-23
公開日2012-04-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools.
Sci Rep, 8, 2018
2YOO
DownloadVisualize
BU of 2yoo by Molmil
Cholest-4-en-3-one bound structure of CYP142 from Mycobacterium smegmatis
分子名称: (8ALPHA,9BETA)-CHOLEST-4-EN-3-ONE, MAGNESIUM ION, P450 HEME-THIOLATE PROTEIN, ...
著者Garcia-Fernandez, E, Frank, D.J, Galan, B, Kells, P.M, Podust, L.M, Garcia, J.L, Ortiz de Montellano, P.R.
登録日2012-10-25
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献A Highly Conserved Mycobacterial Cholesterol Catabolic Pathway.
Environ.Microbiol., 15, 2013
7RF4
DownloadVisualize
BU of 7rf4 by Molmil
RT XFEL structure of Photosystem II 50 microseconds after the second illumination at 2.27 Angstrom resolution
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Hussein, R, Ibrahim, M, Bhowmick, A, Simon, P.S, Chatterjee, R, Lassalle, L, Doyle, M.D, Bogacz, I, Kim, I.-S, Cheah, M.H, Gul, S, de Lichtenberg, C, Chernev, P, Pham, C.C, Young, I.D, Carbajo, S, Fuller, F.D, Alonso-Mori, R, Batyuk, A, Sutherlin, K.D, Brewster, A.S, Bolotovski, R, Mendez, D, Holton, J.M, Moriarty, N.W, Adams, P.D, Bergmann, U, Sauter, N.K, Dobbek, H, Messinger, J, Zouni, A, Kern, J, Yachandra, V.K, Yano, J.
登録日2021-07-13
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Structural dynamics in the water and proton channels of photosystem II during the S 2 to S 3 transition.
Nat Commun, 12, 2021
2GFT
DownloadVisualize
BU of 2gft by Molmil
Crystal structure of the E263A nucleophile mutant of Bacillus licheniformis endo-beta-1,4-galactanase in complex with galactotriose
分子名称: CALCIUM ION, Glycosyl Hydrolase Family 53, beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose
著者Welner, D, Le Nours, J, De Maria, L, Jorgensen, C.T, Christensen, L.L.H, Larsen, S, Lo Leggio, L.
登録日2006-03-23
公開日2006-06-13
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Oligosaccharide binding of Bacillus licheniformis endo-beta-1,4-galactanase
To be Published
2YOG
DownloadVisualize
BU of 2yog by Molmil
Plasmodium falciparum thymidylate kinase in complex with a (thio)urea- alpha-deoxythymidine inhibitor
分子名称: 1-[4-chloranyl-3-(trifluoromethyl)phenyl]-3-[[(2R,3S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxol an-2-yl]methyl]thiourea, THYMIDYLATE KINASE
著者Huaqing, C, Carrero-Lerida, J, Silva, A.P.G, Whittingham, J.L, Brannigan, J.A, Ruiz-Perez, L.M, Read, K.D, Wilson, K.S, Gonzalez-Pacanowska, D, Gilbert, I.H.
登録日2012-10-24
公開日2013-07-24
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Synthesis and Evaluation of Alpha-Thymidine Analogues as Novel Antimalarials.
J.Med.Chem., 55, 2012
7RF3
DownloadVisualize
BU of 7rf3 by Molmil
RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Hussein, R, Ibrahim, M, Bhowmick, A, Simon, P.S, Chatterjee, R, Lassalle, L, Doyle, M.D, Bogacz, I, Kim, I.-S, Cheah, M.H, Gul, S, de Lichtenberg, C, Chernev, P, Pham, C.C, Young, I.D, Carbajo, S, Fuller, F.D, Alonso-Mori, R, Batyuk, A, Sutherlin, K.D, Brewster, A.S, Bolotovski, R, Mendez, D, Holton, J.M, Moriarty, N.W, Adams, P.D, Bergmann, U, Sauter, N.K, Dobbek, H, Messinger, J, Zouni, A, Kern, J, Yachandra, V.K, Yano, J.
登録日2021-07-13
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structural dynamics in the water and proton channels of photosystem II during the S 2 to S 3 transition.
Nat Commun, 12, 2021
6DI0
DownloadVisualize
BU of 6di0 by Molmil
CRYSTAL STRUCTURE OF BTK IN COMPLEX WITH FRAGMENT LIGAND
分子名称: 6-(cyclohexylamino)pyridine-3-carboxamide, Tyrosine-protein kinase BTK
著者MOCHALKIN, I.
登録日2018-05-22
公開日2018-10-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Discovery of a novel series of pyridine and pyrimidine carboxamides as potent and selective covalent inhibitors of Btk.
Bioorg. Med. Chem. Lett., 28, 2018
6D5D
DownloadVisualize
BU of 6d5d by Molmil
Structure of Caldicellulosiruptor danielii GH48 module of glycoside hydrolase WP_045175321
分子名称: CALCIUM ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, glycoside hydrolase WP_045175321
著者Alahuhta, P.M, Lunin, V.V.
登録日2018-04-19
公開日2019-04-24
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Novel multidomain, multifunctional glycoside hydrolases from highly lignocellulolytic Caldicellulosiruptor species
AIChE J., 2019
7ROZ
DownloadVisualize
BU of 7roz by Molmil
Structure of RNA-dependent RNA polymerase 2 (RDR2) from Arabidopsis thaliana
分子名称: MAGNESIUM ION, RNA-dependent RNA polymerase 2
著者Fukudome, A, Pikaard, C.S, Takagi, Y.
登録日2021-08-02
公開日2021-12-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2.
Proc.Natl.Acad.Sci.USA, 118, 2021
7RQS
DownloadVisualize
BU of 7rqs by Molmil
Arabidopsis RNA-dependent RNA polymerase 2
分子名称: MAGNESIUM ION, RNA-dependent RNA polymerase 2
著者Fukudome, A, Pikaard, C.S, Takagi, Y.
登録日2021-08-07
公開日2021-12-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2.
Proc.Natl.Acad.Sci.USA, 118, 2021
5ECE
DownloadVisualize
BU of 5ece by Molmil
Tankyrase 1 with Phthalazinone 1
分子名称: 1,2-ETHANEDIOL, 2-[4-[3-[(4-oxidanylidene-3~{H}-phthalazin-1-yl)methyl]phenyl]carbonylpiperazin-1-yl]pyridine-3-carbonitrile, ACETATE ION, ...
著者Kazmirski, S.L, Johannes, J, Read, J.A, Howard, T, Larsen, N.A, Ferguson, A.D.
登録日2015-10-20
公開日2015-11-25
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of AZ0108, an orally bioavailable phthalazinone PARP inhibitor that blocks centrosome clustering.
Bioorg.Med.Chem.Lett., 25, 2015
2FMN
DownloadVisualize
BU of 2fmn by Molmil
Ala177Val mutant of E. coli Methylenetetrahydrofolate Reductase complex with LY309887
分子名称: 5,10-methylenetetrahydrofolate reductase, FLAVIN-ADENINE DINUCLEOTIDE, N-[(5-{2-[(6R)-2-AMINO-4-OXO-3,4,5,6,7,8-HEXAHYDROPYRIDO[2,3-D]PYRIMIDIN-6-YL]ETHYL}-2-THIENYL)CARBONYL]-L-GLUTAMIC ACID
著者Pejchal, R, Campbell, E, Guenther, B.D, Lennon, B.W, Matthews, R.G, Ludwig, M.L.
登録日2006-01-09
公開日2006-04-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural Perturbations in the Ala -> Val Polymorphism of Methylenetetrahydrofolate Reductase: How Binding of Folates May Protect against Inactivation
Biochemistry, 45, 2006

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon