Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4QRV
DownloadVisualize
BU of 4qrv by Molmil
Crystal structure of I86F mutant of papain
分子名称: CHLORIDE ION, Papain, SODIUM ION
著者Dutta, S, Choudhury, D, Roy, S.
登録日2014-07-02
公開日2015-08-12
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.978 Å)
主引用文献Pro-peptide regulates the substrate specificity and zymogen activation process of papain: A structural and mechanistic insight
to be published
8OY0
DownloadVisualize
BU of 8oy0 by Molmil
ATP phosphoribosyltransferase (HisZG ATPPRT) from Acinetobacter baumanii
分子名称: ATP phosphoribosyltransferase, ATP phosphoribosyltransferase regulatory subunit, GLYCEROL, ...
著者Alphey, M.S, Read, B, da Silva, R.G.
登録日2023-05-03
公開日2023-11-29
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure, Steady-State, and Pre-Steady-State Kinetics of Acinetobacter baumannii ATP Phosphoribosyltransferase.
Biochemistry, 63, 2024
6IX5
DownloadVisualize
BU of 6ix5 by Molmil
The structure of LepI complex with SAM and its substrate analogue
分子名称: 1,2-ETHANEDIOL, 4-hydroxy-3-[(2S,6E,8E)-2-methyldeca-6,8-dienoyl]-5-phenylpyridin-2(1H)-one, CHLORIDE ION, ...
著者Cai, Y, Ohashi, M, Hai, Y, Tang, Y, Zhou, J.
登録日2018-12-09
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for stereoselective dehydration and hydrogen-bonding catalysis by the SAM-dependent pericyclase LepI.
Nat.Chem., 11, 2019
8ORK
DownloadVisualize
BU of 8ork by Molmil
cyclic 2,3-diphosphoglycerate synthetase from the hyperthermophilic archaeon Methanothermus fervidus
分子名称: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, ...
著者De Rose, S.A, Isupov, M.
登録日2023-04-14
公開日2023-12-06
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structural characterization of a novel cyclic 2,3-diphosphoglycerate synthetase involved in extremolyte production in the archaeon Methanothermus fervidus .
Front Microbiol, 14, 2023
4EIF
DownloadVisualize
BU of 4eif by Molmil
Crystal structure of cytochrome c6C L50Q mutant from Synechococcus sp. PCC 7002
分子名称: CHLORIDE ION, Cytochrome c6, HEME C, ...
著者Krzywda, S, Bialek, W, Zatwarnicki, P, Jaskolski, M, Szczepaniak, A.
登録日2012-04-05
公開日2013-04-10
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Cytochrome c6 and c6C from Synechococcus sp. PCC 7002 - structure and function.
To be Published
2HEE
DownloadVisualize
BU of 2hee by Molmil
CONTRIBUTION OF WATER MOLECULES IN THE INTERIOR OF A PROTEIN TO THE CONFORMATIONAL STABILITY
分子名称: LYSOZYME, SODIUM ION
著者Takano, K, Funahashi, J, Yamagata, Y, Fujii, S, Yutani, K.
登録日1997-09-16
公開日1998-01-14
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Contribution of water molecules in the interior of a protein to the conformational stability.
J.Mol.Biol., 274, 1997
4ET8
DownloadVisualize
BU of 4et8 by Molmil
Hen egg-white lysozyme solved from 40 fs free-electron laser pulse data
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Boutet, S, Lomb, L, Williams, G, Barends, T, Aquila, A, Doak, R.B, Weierstall, U, DePonte, D, Steinbrener, J, Shoeman, R, Messerschmidt, M, Barty, A, White, T, Kassemeyer, S, Kirian, R, Seibert, M, Montanez, P, Kenney, C, Herbst, R, Hart, P, Pines, J, Haller, G, Gruner, S, Philllip, H, Tate, M, Hromalik, M, Koerner, L, van Bakel, N, Morse, J, Ghonsalves, W, Arnlund, D, Bogan, M, Calemann, C, Fromme, R, Hampton, C, Hunter, M, Johansson, L, Katona, G, Kupitz, C, Liang, M, Martin, A, Nass, K, Redecke, L, Stellato, F, Timneanu, N, Wang, D, Zatsepin, N, Schafer, D, Defever, K, Neutze, R, Fromme, P, Spence, J, Chapman, H, Schlichting, I.
登録日2012-04-24
公開日2012-06-13
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献High-resolution protein structure determination by serial femtosecond crystallography.
Science, 337, 2012
8P88
DownloadVisualize
BU of 8p88 by Molmil
X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody C4
分子名称: CHLORIDE ION, Light Chain H3, Nanobody C4, ...
著者Broggini, L, Ricagno, S.
登録日2023-05-31
公開日2024-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.022 Å)
主引用文献Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation.
J.Mol.Biol., 435, 2023
1IVG
DownloadVisualize
BU of 1ivg by Molmil
STRUCTURES OF AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, INFLUENZA A SUBTYPE N2 NEURAMINIDASE, ...
著者Jedrzejas, M.J, Luo, M.
登録日1994-12-12
公開日1995-03-31
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of aromatic inhibitors of influenza virus neuraminidase.
Biochemistry, 34, 1995
8PH4
DownloadVisualize
BU of 8ph4 by Molmil
Co-Crystal structure of the SARS-CoV2 main protease Nsp5 with an Uracil-carrying X77-like inhibitor
分子名称: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, MALONATE ION, ...
著者Barthel, T, Altincekic, N, Jores, N, Wollenhaupt, J, Weiss, M.S, Schwalbe, H.
登録日2023-06-18
公開日2024-01-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Targeting the Main Protease (M pro , nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies.
Acs Chem.Biol., 19, 2024
6J3B
DownloadVisualize
BU of 6j3b by Molmil
Crystal structure of human DHODH in complex with inhibitor 1289
分子名称: (6R)-1-[3,5-bis(fluoranyl)-4-[2-fluoranyl-5-(hydroxymethyl)phenyl]phenyl]-6-propan-2-yl-6,7-dihydro-5H-benzotriazol-4-one, ACETATE ION, CHLORIDE ION, ...
著者Yu, Y, Chen, Q.
登録日2019-01-04
公開日2019-08-21
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A novel series of human dihydroorotate dehydrogenase inhibitors discovered by in vitro screening: inhibition activity and crystallographic binding mode.
Febs Open Bio, 9, 2019
4ADB
DownloadVisualize
BU of 4adb by Molmil
Structural and functional study of succinyl-ornithine transaminase from E. coli
分子名称: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
著者Newman, J, Peat, T.S.
登録日2011-12-23
公開日2013-01-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Determination of the Structure of the Catabolic N-Succinylornithine Transaminase (Astc) from Escherichia Coli.
Plos One, 8, 2013
8PHA
DownloadVisualize
BU of 8pha by Molmil
O(S)-methyltransferase from Pleurotus sapidus
分子名称: 2-HYDROXY BUTANE-1,4-DIOL, GLYCEROL, L-ornithine, ...
著者Korf, L, Essen, L.-O.
登録日2023-06-19
公開日2024-03-27
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献A Novel O - and S -Methyltransferase from Pleurotus sapidus Is Involved in Flavor Formation.
J.Agric.Food Chem., 72, 2024
8OYH
DownloadVisualize
BU of 8oyh by Molmil
X-ray structure of furin (PCSK3) in complex with Guanidinomethyl-Phac-Can-Tle-Can-6-(aminomethyl)-3-amino-isoindol
分子名称: CALCIUM ION, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Dahms, S.O, Brandstetter, H.
登録日2023-05-04
公開日2024-03-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Fragment-Based Design, Synthesis, and Characterization of Aminoisoindole-Derived Furin Inhibitors.
Chemmedchem, 19, 2024
6JI2
DownloadVisualize
BU of 6ji2 by Molmil
Crystal structure of archaeal ribosomal protein aP1, aPelota, and GTP-bound aEF1A complex
分子名称: Archaeal ribosomal stalk protein aP1, Elongation factor 1-alpha, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Maruyama, K, Imai, H, Kawamura, M, Ishino, S, Ishino, Y, Ito, K, Uchiumi, T.
登録日2019-02-20
公開日2019-11-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations.
Sci Rep, 9, 2019
4R7C
DownloadVisualize
BU of 4r7c by Molmil
Crystal Structure of CNG mimicking NaK-ETPP mutant cocrystallized with DiMethylammonium
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DIMETHYLAMINE, GLYCINE, ...
著者De March, M, Napolitano, L.M.R, Onesti, S.
登録日2014-08-27
公開日2015-07-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels.
Proc.Natl.Acad.Sci.USA, 112, 2015
2HOH
DownloadVisualize
BU of 2hoh by Molmil
RIBONUCLEASE T1 (N9A MUTANT) COMPLEXED WITH 2'GMP
分子名称: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, PHOSPHATE ION, ...
著者Langhorst, U, Loris, R, Denisov, V.P, Doumen, J, Roose, P, Maes, D, Halle, B, Steyaert, J.
登録日1998-09-14
公開日1998-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Dissection of the structural and functional role of a conserved hydration site in RNase T1.
Protein Sci., 8, 1999
1IVD
DownloadVisualize
BU of 1ivd by Molmil
STRUCTURES OF AROMATIC INHIBITORS OF INFLUENZA VIRUS NEURAMINIDASE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(ACETYLAMINO)-3-HYDROXY-5-NITROBENZOIC ACID, CALCIUM ION, ...
著者Jedrzejas, M.J, Luo, M.
登録日1994-12-12
公開日1995-03-31
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of aromatic inhibitors of influenza virus neuraminidase.
Biochemistry, 34, 1995
8P58
DownloadVisualize
BU of 8p58 by Molmil
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 500 micromolar X77 enantiomer R.
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Costanzi, E, Demitri, N, Storici, P.
登録日2023-05-23
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Unexpected Single-Ligand Occupancy and Negative Cooperativity in the SARS-CoV-2 Main Protease.
J.Chem.Inf.Model., 64, 2024
8P86
DownloadVisualize
BU of 8p86 by Molmil
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 5 mM MG-132, from an "old" crystal.
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Costanzi, E, Demitri, N, Storici, P.
登録日2023-05-31
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Unexpected Single-Ligand Occupancy and Negative Cooperativity in the SARS-CoV-2 Main Protease.
J.Chem.Inf.Model., 64, 2024
8P57
DownloadVisualize
BU of 8p57 by Molmil
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 75 micromolar X77.
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Costanzi, E, Demitri, N, Storici, P.
登録日2023-05-23
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Unexpected Single-Ligand Occupancy and Negative Cooperativity in the SARS-CoV-2 Main Protease.
J.Chem.Inf.Model., 64, 2024
8P55
DownloadVisualize
BU of 8p55 by Molmil
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 75 micromolar MG-132.
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Costanzi, E, Demitri, N, Storici, P.
登録日2023-05-23
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Unexpected Single-Ligand Occupancy and Negative Cooperativity in the SARS-CoV-2 Main Protease.
J.Chem.Inf.Model., 64, 2024
8P5A
DownloadVisualize
BU of 8p5a by Molmil
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 5 millimolar X77 enantiomer R.
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Costanzi, E, Demitri, N, Storici, P.
登録日2023-05-23
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Unexpected Single-Ligand Occupancy and Negative Cooperativity in the SARS-CoV-2 Main Protease.
J.Chem.Inf.Model., 64, 2024
8P87
DownloadVisualize
BU of 8p87 by Molmil
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 5 mM X77, from an "old" crystal.
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, ACETATE ION, ...
著者Costanzi, E, Demitri, N, Storici, P.
登録日2023-05-31
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Unexpected Single-Ligand Occupancy and Negative Cooperativity in the SARS-CoV-2 Main Protease.
J.Chem.Inf.Model., 64, 2024
8P56
DownloadVisualize
BU of 8p56 by Molmil
Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 obtained in presence of 150 micromolar X77.
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Costanzi, E, Demitri, N, Storici, P.
登録日2023-05-23
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Unexpected Single-Ligand Occupancy and Negative Cooperativity in the SARS-CoV-2 Main Protease.
J.Chem.Inf.Model., 64, 2024

223532

件を2024-08-07に公開中

PDB statisticsPDBj update infoContact PDBjnumon