8OY0

ATP phosphoribosyltransferase (HisZG ATPPRT) from Acinetobacter baumanii

Summary for 8OY0

• Entry DOI: 10.2210/pdb8oy0/pdb
• Descriptor: ATP phosphoribosyltransferase regulatory subunit, ATP phosphoribosyltransferase, GLYCEROL, ... (5 entities in total)
• Functional Keywords: atpprt, hiszg, histidine, biosynthesis, transferase
• Biological source: Acinetobacter baumannii ATCC 17978; More
• Total number of polymer chains: 8
• Total formula weight: 272706.69

Authors

Alphey, M.S.,Read, B.,da Silva, R.G. (deposition date: 2023-05-03, release date: 2023-11-29, Last modification date: 2024-03-13)

Primary citation

Read, B.J.,Cadzow, A.F.,Alphey, M.S.,Mitchell, J.B.O.,da Silva, R.G.
Crystal Structure, Steady-State, and Pre-Steady-State Kinetics of Acinetobacter baumannii ATP Phosphoribosyltransferase.
Biochemistry, 63:230-240, 2024

PubMed Abstract: The first step of histidine biosynthesis in , the condensation of ATP and 5-phospho-α-d-ribosyl-1-pyrophosphate to produce -(5-phospho-β-d-ribosyl)-ATP (PRATP) and pyrophosphate, is catalyzed by the hetero-octameric enzyme ATP phosphoribosyltransferase, a promising target for antibiotic design. The catalytic subunit, HisG, is allosterically activated upon binding of the regulatory subunit, HisZ, to form the hetero-octameric holoenzyme (ATPPRT), leading to a large increase in . Here, we present the crystal structure of ATPPRT, along with kinetic investigations of the rate-limiting steps governing catalysis in the nonactivated (HisG) and activated (ATPPRT) forms of the enzyme. A pH-rate profile showed that maximum catalysis is achieved above pH 8.0. Surprisingly, at 25 °C, is higher when ADP replaces ATP as substrate for ATPPRT but not for HisG. The HisG-catalyzed reaction is limited by the chemical step, as suggested by the enhancement of when Mg was replaced by Mn, and by the lack of a pre-steady-state burst of product formation. Conversely, the ATPPRT-catalyzed reaction rate is determined by PRATP diffusion from the active site, as gleaned from a substantial solvent viscosity effect. A burst of product formation could be inferred from pre-steady-state kinetics, but the first turnover was too fast to be directly observed. Lowering the temperature to 5 °C allowed observation of the PRATP formation burst by ATPPRT. At this temperature, the single-turnover rate constant was significantly higher than , providing additional evidence for a step after chemistry limiting catalysis by ATPPRT. This demonstrates allosteric activation by HisZ accelerates the chemical step.

PubMed: 38150593
DOI: 10.1021/acs.biochem.3c00551

Experimental method

X-RAY DIFFRACTION (2.4 Å)