Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GYL
DownloadVisualize
BU of 6gyl by Molmil
Structure of a yeast closed complex with distorted DNA (core CCdist)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P.
登録日2018-06-30
公開日2018-12-05
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Promoter Distortion and Opening in the RNA Polymerase II Cleft.
Mol. Cell, 73, 2019
3J1N
DownloadVisualize
BU of 3j1n by Molmil
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
分子名称: DNA-directed RNA polymerase II subunit RPABC1, DNA-directed RNA polymerase II subunit RPABC2, DNA-directed RNA polymerase II subunit RPABC3, ...
著者Asturias, F.J, Imasaki, T.
登録日2012-03-29
公開日2013-03-06
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (16 Å)
主引用文献Interaction of the mediator head module with RNA polymerase II.
Structure, 20, 2012
5W4U
DownloadVisualize
BU of 5w4u by Molmil
Pol II elongation complex with an N6-methyladenine-containing template
分子名称: 14mer non-template DNA, 29mer template DNA, 9mer RNA, ...
著者Wang, W, Wang, D.
登録日2017-06-13
公開日2018-06-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing.
J.Am.Chem.Soc., 139, 2017
5W51
DownloadVisualize
BU of 5w51 by Molmil
Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP
分子名称: 14mer non-template DNA, 29mer template DNA, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, ...
著者Wang, W, Wang, D.
登録日2017-06-13
公開日2018-06-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.404 Å)
主引用文献Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing.
J.Am.Chem.Soc., 139, 2017
8OEV
DownloadVisualize
BU of 8oev by Molmil
Structure of the mammalian Pol II-SPT6-Elongin complex, lacking ELOA latch (composite structure, structure 3)
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ...
著者Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P.
登録日2023-03-13
公開日2023-10-18
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献Structure of the transcribing RNA polymerase II-Elongin complex.
Nat.Struct.Mol.Biol., 30, 2023
8OEU
DownloadVisualize
BU of 8oeu by Molmil
Structure of the mammalian Pol II-SPT6 complex (composite structure, Structure 4)
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ...
著者Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P.
登録日2023-03-13
公開日2023-10-18
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Structure of the transcribing RNA polymerase II-Elongin complex.
Nat.Struct.Mol.Biol., 30, 2023
8OF0
DownloadVisualize
BU of 8of0 by Molmil
Structure of the mammalian Pol II-SPT6-Elongin complex, Structure 1
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ...
著者Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P.
登録日2023-03-13
公開日2023-10-18
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Structure of the transcribing RNA polymerase II-Elongin complex.
Nat.Struct.Mol.Biol., 30, 2023
8OEW
DownloadVisualize
BU of 8oew by Molmil
Structure of the mammalian Pol II-Elongin complex, lacking the ELOA latch (composite structure, structure 2)
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ...
著者Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P.
登録日2023-03-13
公開日2023-10-18
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure of the transcribing RNA polymerase II-Elongin complex.
Nat.Struct.Mol.Biol., 30, 2023
8UHA
DownloadVisualize
BU of 8uha by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF - tilted
分子名称: DNA (28-MER), DNA (38-MER), DNA-directed RNA polymerase II subunit E, ...
著者Vos, S.M, Su, B.G.
登録日2023-10-08
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 2024
8UIS
DownloadVisualize
BU of 8uis by Molmil
Structure of transcription complex Pol II-DSIF-NELF-TFIIS
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ...
著者Su, B.G, Vos, S.M.
登録日2023-10-10
公開日2024-03-20
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (3.23 Å)
主引用文献Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 84, 2024
8UHD
DownloadVisualize
BU of 8uhd by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF - post-translocated
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ...
著者Su, B.G, Vos, S.M.
登録日2023-10-08
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 2024
8UI0
DownloadVisualize
BU of 8ui0 by Molmil
Structure of poised transcription complex Pol II-DSIF-NELF - pre-translocated
分子名称: DNA, DNA (38-MER), DNA-directed RNA polymerase II subunit E, ...
著者Vos, S.M, Su, B.G.
登録日2023-10-09
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 2024
8UHG
DownloadVisualize
BU of 8uhg by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF - poised post-translocated
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
著者Vos, S.M, Su, B.G.
登録日2023-10-09
公開日2024-03-20
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 84, 2024
6YJ6
DownloadVisualize
BU of 6yj6 by Molmil
Structure of the TFIIIC subcomplex tauA
分子名称: Transcription factor tau 131 kDa subunit, Transcription factor tau 55 kDa subunit, Transcription factor tau 95 kDa subunit,Transcription factor tau 95 kDa subunit
著者Vorlaender, M.K, Muller, C.W.
登録日2020-04-02
公開日2020-09-16
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure of the TFIIIC subcomplex tau A provides insights into RNA polymerase III pre-initiation complex formation.
Nat Commun, 11, 2020
7MEI
DownloadVisualize
BU of 7mei by Molmil
Composite structure of EC+EC
分子名称: DNA (74-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Murakami, K.
登録日2021-04-06
公開日2022-03-02
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7O4L
DownloadVisualize
BU of 7o4l by Molmil
Yeast TFIIH in the expanded state within the pre-initiation complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
登録日2021-04-06
公開日2021-06-16
最終更新日2021-08-04
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O4K
DownloadVisualize
BU of 7o4k by Molmil
Yeast TFIIH in the contracted state within the pre-initiation complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
登録日2021-04-06
公開日2021-06-16
最終更新日2021-08-04
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
1DZF
DownloadVisualize
BU of 1dzf by Molmil
RPB5 from S.cerevisiae
分子名称: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1
著者Todone, F, Weinzierl, R.O.J, Brick, P, Onesti, S.
登録日2000-02-25
公開日2000-06-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Rpb5, a Universal Eukaryotic RNA Polymerase Subunit and Transcription Factor Interaction Target
Proc.Natl.Acad.Sci.USA, 97, 2000
7MKA
DownloadVisualize
BU of 7mka by Molmil
Structure of EC+EC (leading EC-focused)
分子名称: DNA (40-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Murakami, K.
登録日2021-04-22
公開日2022-04-27
最終更新日2023-05-17
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7MK9
DownloadVisualize
BU of 7mk9 by Molmil
Complex structure of trailing EC of EC+EC (trailing EC-focused)
分子名称: DNA (40-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Murakami, K.
登録日2021-04-22
公開日2022-04-27
最終更新日2023-05-17
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
4ROD
DownloadVisualize
BU of 4rod by Molmil
Human TFIIB-related factor 2 (Brf2) and TBP bound to TRNAU1 promoter
分子名称: Non-template strand, TATA-box-binding protein, Template strand, ...
著者Vannini, A, Gouge, J, Satia, K, Guthertz, N.
登録日2014-10-28
公開日2015-12-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2.
Cell(Cambridge,Mass.), 163, 2015
4ROC
DownloadVisualize
BU of 4roc by Molmil
Human TFIIB-related factor 2 (Brf2) and TBP bound to U6#2 promoter
分子名称: MAGNESIUM ION, Non-template strand, TATA-box-binding protein, ...
著者Vannini, A, Gouge, J, Satia, K, Guthertz, N.
登録日2014-10-28
公開日2015-12-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2.
Cell(Cambridge,Mass.), 163, 2015
4AYB
DownloadVisualize
BU of 4ayb by Molmil
RNAP at 3.2Ang
分子名称: DNA-DIRECTED RNA POLYMERASE, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
著者Wojtas, M.N, Mogni, M, Millet, O, Bell, S.D, Abrescia, N.G.A.
登録日2012-06-19
公開日2012-08-08
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.202 Å)
主引用文献Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA.
Nucleic Acids Res., 40, 2012
3NAI
DownloadVisualize
BU of 3nai by Molmil
Crystal structures and functional analysis of murine norovirus RNA-dependent RNA polymerase
分子名称: 5-FLUOROURACIL, GLYCEROL, MAGNESIUM ION, ...
著者Kim, K.H, Lee, J.H, Alam, I, Park, Y, Kang, S.
登録日2010-06-02
公開日2011-06-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Crystal structures and functional analysis of murine norovirus RNA-dependent RNA polymerase
To be Published
5IHE
DownloadVisualize
BU of 5ihe by Molmil
D-family DNA polymerase - DP1 subunit (3'-5' proof-reading exonuclease)
分子名称: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, ACETATE ION, ...
著者Sauguet, L, Raia, P, De Larue, M.
登録日2016-02-29
公開日2016-08-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography.
Nat Commun, 7, 2016

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon