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8KAD
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Crystal structure of an antibody light chain tetramer with 3D domain swapping
分子名称: Antibody light chain
著者Sakai, T, Mashima, T, Kobayashi, N, Ogata, H, Uda, T, Hifumi, E, Hirota, S.
登録日2023-08-02
公開日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and thermodynamic insights into antibody light chain tetramer formation through 3D domain swapping.
Nat Commun, 14, 2023
7MN0
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N74D mutant of the HIV-1 capsid protein
分子名称: IODIDE ION, capsid protein
著者Gres, A.T, Kirby, K.A, Sarafianos, S.G.
登録日2021-04-30
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献TRIM5alpha Restriction of HIV-1-N74D Viruses in Lymphocytes Is Caused by a Loss of Cyclophilin A Protection.
Viruses, 14, 2022
7MKC
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BU of 7mkc by Molmil
N74D mutant of the HIV-1 capsid protein in complex with PF-3450074 (PF74)
分子名称: IODIDE ION, N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE, capsid protein
著者Kirby, K.A, Sarafianos, S.G.
登録日2021-04-23
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献TRIM5alpha Restriction of HIV-1-N74D Viruses in Lymphocytes Is Caused by a Loss of Cyclophilin A Protection.
Viruses, 14, 2022
7MN2
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Rules for designing protein fold switches and their implications for the folding code
分子名称: Sb2
著者He, Y, Chen, Y, Ruan, B, Choi, J, Chen, Y, Motabar, D, Solomon, T, Simmerman, R, Kauffman, T, Gallagher, T, Bryan, P, Orban, J.
登録日2021-04-30
公開日2022-05-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Design and characterization of a protein fold switching network.
Nat Commun, 14, 2023
8KI0
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BU of 8ki0 by Molmil
Crystal structure of the hemophore HasA from Pseudomonas protegens Pf-5 capturing Fe-tetraphenylporphyrin
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Heme acquisition protein HasAp, ...
著者Shisaka, Y, Inaba, H, Sugimoto, H, Shoji, O.
登録日2023-08-22
公開日2024-03-27
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Heme-substituted protein assembly bridged by synthetic porphyrin: achieving controlled configuration while maintaining rotational freedom.
Rsc Adv, 14, 2024
8KI1
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Crystal structure of the holo form of the hemophore HasA from Pseudomonas protegens Pf-5
分子名称: GLYCEROL, Heme acquisition protein HasAp, PHOSPHATE ION, ...
著者Shisaka, Y, Inaba, H, Sugimoto, H, Shoji, O.
登録日2023-08-22
公開日2024-03-27
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Heme-substituted protein assembly bridged by synthetic porphyrin: achieving controlled configuration while maintaining rotational freedom.
Rsc Adv, 14, 2024
8KIF
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BU of 8kif by Molmil
The structure of MmaE with substrate
分子名称: (3R)-3-(2-hydroxy-2-oxoethylamino)decanoic acid, FE (II) ION, Putative dioxygenase
著者Chen, J, Zhou, J.
登録日2023-08-23
公開日2024-04-17
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Variation in biosynthesis and metal-binding properties of isonitrile-containing peptides produced by Mycobacteria versus Streptomyces.
Acs Catalysis, 14, 2024
8KHT
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BU of 8kht by Molmil
The structure of Rv0097 with substrate
分子名称: (3R)-3-(2-hydroxy-2-oxoethylamino)decanoic acid, FE (II) ION, Oxidoreductase
著者Chen, J, Zhou, J.
登録日2023-08-22
公開日2024-04-17
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Variation in biosynthesis and metal-binding properties of isonitrile-containing peptides produced by Mycobacteria versus Streptomyces.
Acs Catalysis, 14, 2024
7MP7
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BU of 7mp7 by Molmil
Rules for designing protein fold switches and their implications for the folding code
分子名称: Sb3
著者He, Y, Chen, Y, Ruan, B, Choi, J, Chen, Y, Motabar, D, Solomon, T, Simmerman, R, Kauffman, T, Gallagher, T, Bryan, P, Orban, J.
登録日2021-05-04
公開日2022-05-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Design and characterization of a protein fold switching network.
Nat Commun, 14, 2023
7MN1
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BU of 7mn1 by Molmil
Rules for designing protein fold switches and their implications for the folding code
分子名称: Sa1
著者He, Y, Chen, Y, Ruan, B, Choi, J, Chen, Y, Motabar, D, Solomon, T, Simmerman, R, Kauffman, T, Gallagher, T, Bryan, P, Orban, J.
登録日2021-04-30
公開日2022-05-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Design and characterization of a protein fold switching network.
Nat Commun, 14, 2023
8JQY
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BU of 8jqy by Molmil
Crystal Structure of nucleotide-free mIRGB10
分子名称: Immunity-related GTPase family member b10
著者Ha, H.J, Park, H.H.
登録日2023-06-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.68 Å)
主引用文献Structural basis of IRGB10 oligomerization by GTP hydrolysis.
Front Immunol, 14, 2023
7MQ4
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Rules for designing protein fold switches and their implications for the folding code
分子名称: Sb1
著者He, Y, Chen, Y, Ruan, B, Choi, J, Chen, Y, Motabar, D, Solomon, T, Simmerman, R, Kauffman, T, Gallagher, T, Bryan, P, Orban, J.
登録日2021-05-05
公開日2022-05-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Design and characterization of a protein fold switching network.
Nat Commun, 14, 2023
8JQZ
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BU of 8jqz by Molmil
Crystal Structure of GppNHp-bound mIRGB10
分子名称: Immunity-related GTPase family member b10, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
著者Ha, H.J, Park, H.H.
登録日2023-06-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural basis of IRGB10 oligomerization by GTP hydrolysis.
Front Immunol, 14, 2023
8K7P
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BU of 8k7p by Molmil
Staphylococcus aureus lipase -PSA complex
分子名称: ACETIC ACID, CALCIUM ION, CHLORIDE ION, ...
著者Kitadokoro, J, Kamitani, S, Kitadokoro, K.
登録日2023-07-27
公開日2024-06-05
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Crystal structure of Staphylococcus aureus lipase complex with unsaturated petroselinic acid.
Febs Open Bio, 14, 2024
8K7Q
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BU of 8k7q by Molmil
Staphylococcus aureus lipase S116A inactive mutant-PSA complex
分子名称: ACETIC ACID, CALCIUM ION, CHLORIDE ION, ...
著者Kitadokoro, J, Kamitani, S, Kitadokoro, K.
登録日2023-07-27
公開日2024-06-05
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystal structure of Staphylococcus aureus lipase complex with unsaturated petroselinic acid.
Febs Open Bio, 14, 2024
6Q9L
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BU of 6q9l by Molmil
HDM2 (17-111, WILDTYPE) COMPLEXED WITH COMPOUND 9 AT 1.13A; Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2, [6-chloranyl-3-[3-[[4-chloranyl-2-(hydroxymethyl)phenyl]methyl]-5-phenyl-imidazol-4-yl]-1~{H}-indol-2-yl]-[(3~{S})-3-[3-(dimethylamino)propyl-methyl-amino]pyrrolidin-1-yl]methanone
著者Kallen, J.
登録日2018-12-18
公開日2019-05-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes.
Chemmedchem, 14, 2019
6Q9O
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HDM2 (17-111, WILDTYPE) COMPLEXED WITH COMPOUND 10 AT 1.21A; Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes
分子名称: E3 ubiquitin-protein ligase Mdm2, ~{N}-~{tert}-butyl-2-[4-chloranyl-2-[5-(3-chloranyl-4-fluoranyl-phenyl)-2-cyclohexyl-4-(1~{H}-1,2,3,4-tetrazol-5-yl)imidazol-1-yl]phenyl]ethanamide
著者Kallen, J.
登録日2018-12-18
公開日2019-05-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes.
Chemmedchem, 14, 2019
6Q9W
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BU of 6q9w by Molmil
X-ray structure of compound 15 bound to HdmX: Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes
分子名称: (4~{S})-4-(4-chlorophenyl)-5-[(1~{S})-1-(3-chlorophenyl)ethyl]-2-(2,4-dimethoxypyrimidin-5-yl)-3-propan-2-yl-4~{H}-pyrrolo[3,4-d]imidazol-6-one, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Protein Mdm4, ...
著者Kallen, J.
登録日2018-12-18
公開日2019-05-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes.
Chemmedchem, 14, 2019
8P0P
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Crystal structure of AaNGT complexed to UDP-2F-Glucose
分子名称: Adhesin, URIDINE-5'-DIPHOSPHATE, URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE
著者Piniello, B, Macias-Leon, J, Rovira, C, Hurtado-Guerrero, R.
登録日2023-05-10
公開日2023-09-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Molecular basis for bacterial N-glycosylation by a soluble HMW1C-like N-glycosyltransferase.
Nat Commun, 14, 2023
8OSH
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BU of 8osh by Molmil
AAA+ motor subunit ChlI of magnesium chelatase, pentamer spring-washer-like conformation
分子名称: Magnesium-chelatase subunit ChlI
著者Shvarev, D, Moeller, A.
登録日2023-04-18
公開日2023-09-06
最終更新日2023-11-29
実験手法ELECTRON MICROSCOPY (4.9 Å)
主引用文献Conformational variability of cyanobacterial ChlI, the AAA+ motor of magnesium chelatase involved in chlorophyll biosynthesis.
Mbio, 14, 2023
8P5S
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BU of 8p5s by Molmil
Crystal structure of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum
分子名称: 2-oxoglutarate dehydrogenase E1/E2 component, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETYL COENZYME *A, ...
著者Yang, L, Boyko, A, Bellinzoni, M.
登録日2023-05-24
公開日2023-08-16
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.459 Å)
主引用文献High resolution cryo-EM and crystallographic snapshots of the actinobacterial two-in-one 2-oxoglutarate dehydrogenase.
Nat Commun, 14, 2023
6Q9H
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HDM2 (17-111, WILD TYPE) COMPLEXED WITH COMPOUND 11 AT 2.0A; Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes
分子名称: (4~{S})-5-(3-chloranyl-2-fluoranyl-phenyl)-4-(4-chloranyl-2-methyl-phenyl)-3-propan-2-yl-1,4-dihydropyrrolo[3,4-c]pyrazol-6-one, E3 ubiquitin-protein ligase Mdm2
著者Kallen, J.
登録日2018-12-18
公開日2019-05-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes.
Chemmedchem, 14, 2019
8P97
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BtuB3G3 bound to cyanocobalamin with disordered EL8
分子名称: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2023-06-05
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P5N
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Arsenate reductase (ArsC2) from Deinococcus indicus, co-crystallized with arsenate
分子名称: ARSENATE, GLYCEROL, Low molecular weight phosphatase family protein
著者Gouveia, A.G, Matias, P.M, Romao, C.V.
登録日2023-05-24
公開日2023-08-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Unraveling the multifaceted resilience of arsenic resistant bacterium Deinococcus indicus .
Front Microbiol, 14, 2023
8P98
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BtuB3G3 bound to cyanocobalamin with ordered EL8
分子名称: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2023-06-05
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023

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