PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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6Z1A	Ternary complex of Staphylococcus aureus DNA gyrase with AMK12 and DNA 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, DIMETHYL SULFOXIDE, ... 著者 Kolaric, A, Germe, T, Hrast, M, Stevenson, C.E.M, Lawson, D.M, Burton, N, Voros, J, Maxwell, A, Minovski, N, Anderluh, M. 登録日 2020-05-13 公開日 2020-11-11 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Potent DNA gyrase inhibitors bind asymmetrically to their target using symmetrical bifurcated halogen bonds. Nat Commun, 12, 2021
3BEP	Structure of a sliding clamp on DNA 分子名称: 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium, DNA (5'-D(*DTP*DTP*DTP*DTP*DAP*DTP*DAP*DCP*DGP*DAP*DTP*DGP*DGP*DG)-3'), DNA (5'-D(P*DCP*DCP*DCP*DAP*DTP*DCP*DGP*DTP*DAP*DT)-3'), ... 著者 Georgescu, R.E, Kim, S.S, Yurieva, O, Kuriyan, J, Kong, X.-P, O'Donnell, M. 登録日 2007-11-19 公開日 2008-01-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Structure of a sliding clamp on DNA Cell(Cambridge,Mass.), 132, 2008
5LGY	Lysine 120-acetylated P53 DNA binding domain in a complex with the BAX response element. 分子名称: Cellular tumor antigen p53, DNA (5'-D(*AP*GP*GP*CP*TP*TP*GP*TP*CP*TP*CP*TP*AP*AP*CP*TP*TP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*CP*AP*AP*GP*TP*TP*AP*GP*AP*GP*AP*CP*AP*AP*GP*CP*CP*T)-3'), ... 著者 Arbely, E, Vainer, R. 登録日 2016-07-08 公開日 2016-07-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.92 Å) 主引用文献 Structural Basis for p53 Lys120-Acetylation-Dependent DNA-Binding Mode. J.Mol.Biol., 428, 2016
4XID	AntpHD with 15bp DNA duplex 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... 著者 White, M.A, Zandarashvili, L, Iwahara, J. 登録日 2015-01-06 公開日 2015-11-25 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.701 Å) 主引用文献 Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate. Biophys.J., 109, 2015
2H1K	Crystal structure of the Pdx1 homeodomain in complex with DNA 分子名称: 15-mer DNA, Pancreatic and duodenal homeobox 1 著者 Longo, A, Guanga, G.P, Rose, R.B. 登録日 2006-05-16 公開日 2007-03-20 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 Structural basis for induced fit mechanisms in DNA recognition by the pdx1 homeodomain Biochemistry, 46, 2007
7CFV	Solution NMR structure of DnaX mini intein from Spirulina platensis 分子名称: Spl DnaX mini-intein 著者 Boral, S, Lee, W, De, S. 登録日 2020-06-28 公開日 2020-12-23 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural, Dynamic, and Functional Characterization of a DnaX Mini-intein Derived from Spirulina platensis Provides Important Insights into Intein-Mediated Catalysis of Protein Splicing. Biochemistry, 59, 2020
7N2M	Crystal structure of DNA polymerase alpha catalytic core in complex with dCTP and template/primer having T-C mismatch at the post-insertion site 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*T*AP*GP*TP*CP*GP*CP*TP*CP*CP*AP*GP*GP*C)-3'), DNA polymerase alpha catalytic subunit, ... 著者 Tahirov, T.H, Baranovskiy, A.G, Babayeva, N.D. 登録日 2021-05-29 公開日 2022-04-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural and functional insight into mismatch extension by human DNA polymerase alpha. Proc.Natl.Acad.Sci.USA, 119, 2022
4XIC	ANTPHD WITH 15BP di-thioate modified DNA DUPLEX 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C2S)P*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... 著者 White, M.A, Zandarashvili, L, Iwahara, J. 登録日 2015-01-06 公開日 2015-11-25 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate. Biophys.J., 109, 2015
8RK2	Human Replication protein A (RPA; trimeric core) - ssDNA complex 分子名称: Replication protein A 14 kDa subunit, Replication protein A 32 kDa subunit, Replication protein A 70 kDa DNA-binding subunit, ... 著者 Liang, C.C, West, S.C. 登録日 2023-12-22 公開日 2024-04-24 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanism of single-stranded DNA annealing by RAD52-RPA complex. Nature, 629, 2024
6MEC	Structure of a group II intron retroelement after DNA integration 分子名称: MAGNESIUM ION, Maturase reverse transcriptase, SODIUM ION, ... 著者 Haack, D, Yan, X, Zhang, C, Hingey, J, Lyumkis, D, Baker, T.S, Toor, N. 登録日 2018-09-06 公開日 2019-08-14 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. Cell, 178, 2019
4RNM	Crystal structure of human polymerase eta inserting dAMPnPP opposite DNA template containing an abasic site 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA Primar: AGCGTCAT, DNA Template: CAT(3DR)ATGACGCT, ... 著者 Patra, A, Egli, M. 登録日 2014-10-24 公開日 2015-02-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.144 Å) 主引用文献 Structural and Kinetic Analysis of Nucleoside Triphosphate Incorporation Opposite an Abasic Site by Human Translesion DNA Polymerase eta. J.Biol.Chem., 290, 2015
4TYN	DEAD-box helicase Mss116 bound to ssDNA and ADP-BeF 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase MSS116, mitochondrial, ... 著者 Mallam, A.L, Sidote, D.J, Lambowitz, A.M. 登録日 2014-07-08 公開日 2014-12-31 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.959 Å) 主引用文献 Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase. Elife, 3, 2014
1JJ8	Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 分子名称: 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*(5IT)P*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', DNA-INVERTASE HIN 著者 Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. 登録日 2001-07-03 公開日 2002-02-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
1IJW	Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations. 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*(CBR)P*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', ... 著者 Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. 登録日 2001-04-30 公開日 2002-02-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
1JJ6	Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations. 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*(5IT)P*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', ... 著者 Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. 登録日 2001-07-03 公開日 2002-02-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
1JKO	Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*AP*CP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*GP*TP*AP*AP*GP*A)-3', ... 著者 Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. 登録日 2001-07-12 公開日 2002-02-22 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
1JKR	Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*GP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*CP*AP*AP*GP*A)-3', ... 著者 Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. 登録日 2001-07-13 公開日 2002-02-22 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
1JKQ	Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 分子名称: 5'-D(*AP*TP*CP*TP*TP*AP*TP*AP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3', DNA-INVERTASE HIN 著者 Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. 登録日 2001-07-13 公開日 2002-02-22 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
1JKP	Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations 分子名称: 5'-D(*AP*TP*CP*TP*TP*CP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*GP*AP*AP*GP*A)-3', DNA-INVERTASE HIN 著者 Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. 登録日 2001-07-13 公開日 2002-02-22 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
8UCU	Partial DNA termination subcomplex of Xenopus laevis DNA polymerase alpha-primase 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ... 著者 Mullins, E.A, Chazin, W.J, Eichman, B.F. 登録日 2023-09-27 公開日 2023-10-11 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase. Nat.Struct.Mol.Biol., 31, 2024
8UCW	Complete DNA termination subcomplex 2 of Xenopus laevis DNA polymerase alpha-primase 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ... 著者 Mullins, E.A, Chazin, W.C, Eichman, B.F. 登録日 2023-09-27 公開日 2023-10-11 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.64 Å) 主引用文献 A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase. Nat.Struct.Mol.Biol., 31, 2024
8FLJ	Cas1-Cas2/3 integrase and IHF bound to CRISPR leader, repeat and foreign DNA 分子名称: CRISPR leader and repeat, anti-sense strand of DNA, CRISPR leader, ... 著者 Santiago-Frangos, A, Henriques, W.S, Wiegand, T, Gauvin, C, Buyukyoruk, M, Neselu, K, Eng, E.T, Lander, G.C, Wiedenheft, B. 登録日 2022-12-21 公開日 2023-09-06 最終更新日 2023-11-22 実験手法 ELECTRON MICROSCOPY (3.48 Å) 主引用文献 Structure reveals why genome folding is necessary for site-specific integration of foreign DNA into CRISPR arrays. Nat.Struct.Mol.Biol., 30, 2023
1WD0	Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers 分子名称: 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3', DNA-binding proteins 7a/7b/7d 著者 Ko, T.-P, Chu, H.-M, Chen, C.-Y, Chou, C.-C, Wang, A.H.-J. 登録日 2004-05-10 公開日 2004-08-03 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers. Acta Crystallogr.,Sect.D, 60, 2004
4RU9	Crystal structure of human DNA polymerase eta inserting dCMPNPP opposite a MeFapy-dG adducted DNA template 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA polymerase eta, MAGNESIUM ION, ... 著者 Patra, A, Egli, M. 登録日 2014-11-18 公開日 2015-08-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structural Basis for Error-Free Bypass of the 5-N-Methylformamidopyrimidine-dG Lesion by Human DNA Polymerase eta and Sulfolobus solfataricus P2 Polymerase IV. J.Am.Chem.Soc., 137, 2015
3LDS	Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoG 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*(8OG)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(DDG))-3'), ... 著者 Hogg, M, Midkiff, J, Rudnicki, J, Reha-Krantz, L, Doublie, S, Wallace, S.S. 登録日 2010-01-13 公開日 2010-06-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Kinetics of mismatch formation opposite lesions by the replicative DNA polymerase from bacteriophage RB69. Biochemistry, 49, 2010

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