6Z1A
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![BU of 6z1a by Molmil](/molmil-images/mine/6z1a) | Ternary complex of Staphylococcus aureus DNA gyrase with AMK12 and DNA | 分子名称: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, DIMETHYL SULFOXIDE, ... | 著者 | Kolaric, A, Germe, T, Hrast, M, Stevenson, C.E.M, Lawson, D.M, Burton, N, Voros, J, Maxwell, A, Minovski, N, Anderluh, M. | 登録日 | 2020-05-13 | 公開日 | 2020-11-11 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Potent DNA gyrase inhibitors bind asymmetrically to their target using symmetrical bifurcated halogen bonds. Nat Commun, 12, 2021
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3BEP
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![BU of 3bep by Molmil](/molmil-images/mine/3bep) | Structure of a sliding clamp on DNA | 分子名称: | 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium, DNA (5'-D(*DTP*DTP*DTP*DTP*DAP*DTP*DAP*DCP*DGP*DAP*DTP*DGP*DGP*DG)-3'), DNA (5'-D(P*DCP*DCP*DCP*DAP*DTP*DCP*DGP*DTP*DAP*DT)-3'), ... | 著者 | Georgescu, R.E, Kim, S.S, Yurieva, O, Kuriyan, J, Kong, X.-P, O'Donnell, M. | 登録日 | 2007-11-19 | 公開日 | 2008-01-29 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (1.92 Å) | 主引用文献 | Structure of a sliding clamp on DNA Cell(Cambridge,Mass.), 132, 2008
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5LGY
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![BU of 5lgy by Molmil](/molmil-images/mine/5lgy) | |
4XID
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![BU of 4xid by Molmil](/molmil-images/mine/4xid) | AntpHD with 15bp DNA duplex | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... | 著者 | White, M.A, Zandarashvili, L, Iwahara, J. | 登録日 | 2015-01-06 | 公開日 | 2015-11-25 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.701 Å) | 主引用文献 | Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate. Biophys.J., 109, 2015
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2H1K
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![BU of 2h1k by Molmil](/molmil-images/mine/2h1k) | |
7CFV
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![BU of 7cfv by Molmil](/molmil-images/mine/7cfv) | |
7N2M
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![BU of 7n2m by Molmil](/molmil-images/mine/7n2m) | Crystal structure of DNA polymerase alpha catalytic core in complex with dCTP and template/primer having T-C mismatch at the post-insertion site | 分子名称: | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*T*AP*GP*TP*CP*GP*CP*TP*CP*CP*AP*GP*GP*C)-3'), DNA polymerase alpha catalytic subunit, ... | 著者 | Tahirov, T.H, Baranovskiy, A.G, Babayeva, N.D. | 登録日 | 2021-05-29 | 公開日 | 2022-04-20 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Structural and functional insight into mismatch extension by human DNA polymerase alpha. Proc.Natl.Acad.Sci.USA, 119, 2022
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4XIC
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![BU of 4xic by Molmil](/molmil-images/mine/4xic) | ANTPHD WITH 15BP di-thioate modified DNA DUPLEX | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C2S)P*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... | 著者 | White, M.A, Zandarashvili, L, Iwahara, J. | 登録日 | 2015-01-06 | 公開日 | 2015-11-25 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.69 Å) | 主引用文献 | Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate. Biophys.J., 109, 2015
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8RK2
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![BU of 8rk2 by Molmil](/molmil-images/mine/8rk2) | |
6MEC
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![BU of 6mec by Molmil](/molmil-images/mine/6mec) | Structure of a group II intron retroelement after DNA integration | 分子名称: | MAGNESIUM ION, Maturase reverse transcriptase, SODIUM ION, ... | 著者 | Haack, D, Yan, X, Zhang, C, Hingey, J, Lyumkis, D, Baker, T.S, Toor, N. | 登録日 | 2018-09-06 | 公開日 | 2019-08-14 | 最終更新日 | 2024-03-13 | 実験手法 | ELECTRON MICROSCOPY (3.6 Å) | 主引用文献 | Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. Cell, 178, 2019
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4RNM
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![BU of 4rnm by Molmil](/molmil-images/mine/4rnm) | |
4TYN
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![BU of 4tyn by Molmil](/molmil-images/mine/4tyn) | DEAD-box helicase Mss116 bound to ssDNA and ADP-BeF | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase MSS116, mitochondrial, ... | 著者 | Mallam, A.L, Sidote, D.J, Lambowitz, A.M. | 登録日 | 2014-07-08 | 公開日 | 2014-12-31 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.959 Å) | 主引用文献 | Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase. Elife, 3, 2014
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1JJ8
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![BU of 1jj8 by Molmil](/molmil-images/mine/1jj8) | Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations | 分子名称: | 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*(5IT)P*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', DNA-INVERTASE HIN | 著者 | Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. | 登録日 | 2001-07-03 | 公開日 | 2002-02-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
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1IJW
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![BU of 1ijw by Molmil](/molmil-images/mine/1ijw) | Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations. | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*(CBR)P*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', ... | 著者 | Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. | 登録日 | 2001-04-30 | 公開日 | 2002-02-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
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1JJ6
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![BU of 1jj6 by Molmil](/molmil-images/mine/1jj6) | Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations. | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*(5IT)P*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', ... | 著者 | Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. | 登録日 | 2001-07-03 | 公開日 | 2002-02-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
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1JKO
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![BU of 1jko by Molmil](/molmil-images/mine/1jko) | Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*AP*CP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*GP*TP*AP*AP*GP*A)-3', ... | 著者 | Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. | 登録日 | 2001-07-12 | 公開日 | 2002-02-22 | 最終更新日 | 2023-08-16 | 実験手法 | X-RAY DIFFRACTION (2.24 Å) | 主引用文献 | Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
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1JKR
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![BU of 1jkr by Molmil](/molmil-images/mine/1jkr) | Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*GP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*CP*AP*AP*GP*A)-3', ... | 著者 | Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. | 登録日 | 2001-07-13 | 公開日 | 2002-02-22 | 最終更新日 | 2023-08-16 | 実験手法 | X-RAY DIFFRACTION (2.28 Å) | 主引用文献 | Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
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1JKQ
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![BU of 1jkq by Molmil](/molmil-images/mine/1jkq) | Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations | 分子名称: | 5'-D(*AP*TP*CP*TP*TP*AP*TP*AP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3', DNA-INVERTASE HIN | 著者 | Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. | 登録日 | 2001-07-13 | 公開日 | 2002-02-22 | 最終更新日 | 2023-08-16 | 実験手法 | X-RAY DIFFRACTION (2.86 Å) | 主引用文献 | Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
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1JKP
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![BU of 1jkp by Molmil](/molmil-images/mine/1jkp) | Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations | 分子名称: | 5'-D(*AP*TP*CP*TP*TP*CP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*GP*AP*AP*GP*A)-3', DNA-INVERTASE HIN | 著者 | Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E. | 登録日 | 2001-07-13 | 公開日 | 2002-02-22 | 最終更新日 | 2023-08-16 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Testing water-mediated DNA recognition by the Hin recombinase. EMBO J., 21, 2002
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8UCU
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![BU of 8ucu by Molmil](/molmil-images/mine/8ucu) | Partial DNA termination subcomplex of Xenopus laevis DNA polymerase alpha-primase | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ... | 著者 | Mullins, E.A, Chazin, W.J, Eichman, B.F. | 登録日 | 2023-09-27 | 公開日 | 2023-10-11 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (2.85 Å) | 主引用文献 | A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase. Nat.Struct.Mol.Biol., 31, 2024
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8UCW
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![BU of 8ucw by Molmil](/molmil-images/mine/8ucw) | Complete DNA termination subcomplex 2 of Xenopus laevis DNA polymerase alpha-primase | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ... | 著者 | Mullins, E.A, Chazin, W.C, Eichman, B.F. | 登録日 | 2023-09-27 | 公開日 | 2023-10-11 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (3.64 Å) | 主引用文献 | A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase. Nat.Struct.Mol.Biol., 31, 2024
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8FLJ
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![BU of 8flj by Molmil](/molmil-images/mine/8flj) | Cas1-Cas2/3 integrase and IHF bound to CRISPR leader, repeat and foreign DNA | 分子名称: | CRISPR leader and repeat, anti-sense strand of DNA, CRISPR leader, ... | 著者 | Santiago-Frangos, A, Henriques, W.S, Wiegand, T, Gauvin, C, Buyukyoruk, M, Neselu, K, Eng, E.T, Lander, G.C, Wiedenheft, B. | 登録日 | 2022-12-21 | 公開日 | 2023-09-06 | 最終更新日 | 2023-11-22 | 実験手法 | ELECTRON MICROSCOPY (3.48 Å) | 主引用文献 | Structure reveals why genome folding is necessary for site-specific integration of foreign DNA into CRISPR arrays. Nat.Struct.Mol.Biol., 30, 2023
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1WD0
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![BU of 1wd0 by Molmil](/molmil-images/mine/1wd0) | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | 分子名称: | 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3', DNA-binding proteins 7a/7b/7d | 著者 | Ko, T.-P, Chu, H.-M, Chen, C.-Y, Chou, C.-C, Wang, A.H.-J. | 登録日 | 2004-05-10 | 公開日 | 2004-08-03 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers. Acta Crystallogr.,Sect.D, 60, 2004
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4RU9
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![BU of 4ru9 by Molmil](/molmil-images/mine/4ru9) | |
3LDS
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![BU of 3lds by Molmil](/molmil-images/mine/3lds) | Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoG | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*(8OG)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(DDG))-3'), ... | 著者 | Hogg, M, Midkiff, J, Rudnicki, J, Reha-Krantz, L, Doublie, S, Wallace, S.S. | 登録日 | 2010-01-13 | 公開日 | 2010-06-02 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Kinetics of mismatch formation opposite lesions by the replicative DNA polymerase from bacteriophage RB69. Biochemistry, 49, 2010
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