PDB: 423 件ウェブページステータス検索Chemie searchBIRD

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4LFZ	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-27 公開日 2014-08-06 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.92000055 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
7BHO	DNA origami signpost designed model 分子名称: DNA, DNA scaffold 著者 Silvester, E, Vollmer, B, Prazak, V, Vasishtan, D, Machala, E.A, Whittle, C, Black, S, Bath, J, Turberfield, A.J, Gruenewald, K, Baker, L.A. 登録日 2021-01-11 公開日 2021-04-14 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (36.439999 Å) 主引用文献 DNA origami signposts for identifying proteins on cell membranes by electron cryotomography. Cell, 184, 2021
4TUE	Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4TUC	Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4TUB	Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4TUA	Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4TUD	Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-06-24 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
6BZ6	Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-22 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.18 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BUW	Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-11 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BZ8	Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-22 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.74 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BZ7	Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-22 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.68 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6NTA	Modified ASL proline bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M. 登録日 2019-01-28 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6NUO	Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-01 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6NSH	Modified ASL proline bound to Thermus thermophilus 70S (near-cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M. 登録日 2019-01-24 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.397 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6O3M	Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-26 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.97 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6NDK	Structure of ASLSufA6 A37.5 bound to the 70S A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.T, Hoffer, E.D, Dunham, C.M. 登録日 2018-12-13 公開日 2019-02-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.64 Å) 主引用文献 Importance of a tRNA anticodon loop modification and a conserved, noncanonical anticodon stem pairing intRNACGGProfor decoding J. Biol. Chem., 294, 2019
6OPE	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Sunita, S, Dunham, C.M. 登録日 2019-04-24 公開日 2020-06-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Disruption of evolutionarily correlated tRNA elements impairs accurate decoding. Proc.Natl.Acad.Sci.USA, 117, 2020
6OTR	Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Pavelich, I.P, Hoffer, E.D, Maehigashi, T, Dunham, C.M. 登録日 2019-05-03 公開日 2019-08-21 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability. Nucleic Acids Res., 47, 2019
6ORD	Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Sunita, S, Dunham, C.M. 登録日 2019-04-30 公開日 2020-06-24 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Disruption of evolutionarily correlated tRNA elements impairs accurate decoding. Proc.Natl.Acad.Sci.USA, 117, 2020
6OJ2	Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Sunita, S, Dunham, C.M. 登録日 2019-04-10 公開日 2020-06-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Disruption of evolutionarily correlated tRNA elements impairs accurate decoding. Proc.Natl.Acad.Sci.USA, 117, 2020
6OSI	Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-05-01 公開日 2020-10-14 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (4.14 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6NWY	Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-07 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6OXI	Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Pavelich, I.J, Hoffer, E.D, Maehigashi, T, Dunham, C.M. 登録日 2019-05-13 公開日 2019-08-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.495 Å) 主引用文献 Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability. Nucleic Acids Res., 47, 2019
6OF6	Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Sunita, S, Dunham, C.M. 登録日 2019-03-28 公開日 2020-06-24 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Disruption of evolutionarily correlated tRNA elements impairs accurate decoding. Proc.Natl.Acad.Sci.USA, 117, 2020
6OXA	Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Pavelich, I.J, Hoffer, E.D, Maehigashi, T, Dunham, C.M. 登録日 2019-05-13 公開日 2019-08-21 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability. Nucleic Acids Res., 47, 2019

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