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6O2Z
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Crystal structure of IDH1 R132H mutant in complex with compound 32
分子名称: 6-{[(6-chloro-2-oxo-1,2-dihydroquinolin-3-yl)methyl]amino}-2-methylpyridine-3-carbonitrile, GLYCEROL, Isocitrate dehydrogenase [NADP] cytoplasmic, ...
著者Toms, A.V, Lin, J.
登録日2019-02-25
公開日2019-06-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Discovery and Optimization of Quinolinone Derivatives as Potent, Selective, and Orally Bioavailable Mutant Isocitrate Dehydrogenase 1 (mIDH1) Inhibitors.
J.Med.Chem., 62, 2019
6NOS
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BU of 6nos by Molmil
PD-L1 IgV domain V76T with fragment
分子名称: 1-[5-(3,5-dichlorophenyl)furan-2-yl]-N-methylmethanamine, Programmed cell death 1 ligand 1
著者Zhao, B, Perry, E.
登録日2019-01-16
公開日2019-02-20
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.701 Å)
主引用文献Fragment-based screening of programmed death ligand 1 (PD-L1).
Bioorg. Med. Chem. Lett., 29, 2019
6N87
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Plasmodium falciparum FVO apical membrane antigen 1 (AMA1) bound to MTSL spin-labelled cyclised RON2 peptide
分子名称: Apical membrane antigen-1, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, backbone-cyclised peptide bcRON2hp
著者McGowan, S, Drinkwater, N.
登録日2018-11-28
公開日2019-01-30
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.588 Å)
主引用文献Identification of the Binding Site of Apical Membrane Antigen 1 (AMA1) Inhibitors Using a Paramagnetic Probe.
ChemMedChem, 14, 2019
6O2Y
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BU of 6o2y by Molmil
Crystal structure of IDH1 R132H mutant in complex with compound 24
分子名称: 4-{[(6-chloro-2-oxo-1,2-dihydroquinolin-3-yl)methyl]amino}-2-methoxybenzonitrile, BETA-MERCAPTOETHANOL, Isocitrate dehydrogenase [NADP] cytoplasmic, ...
著者Toms, A.V, Lin, J.
登録日2019-02-25
公開日2019-06-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery and Optimization of Quinolinone Derivatives as Potent, Selective, and Orally Bioavailable Mutant Isocitrate Dehydrogenase 1 (mIDH1) Inhibitors.
J.Med.Chem., 62, 2019
6ZB8
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BU of 6zb8 by Molmil
Exo-beta-1,3-glucanase from moose rumen microbiome, active site mutant E167Q/E295Q
分子名称: Exo-beta-1,3-glucanase variant E167Q/E295Q, POLYETHYLENE GLYCOL (N=34)
著者Kalyani, D.C, Reichenbach, T, Aspeborg, H, Divne, C.
登録日2020-06-08
公開日2021-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A homodimeric bacterial exo-beta-1,3-glucanase derived from moose rumen microbiome shows a structural framework similar to yeast exo-beta-1,3-glucanases.
Enzyme.Microb.Technol., 143, 2021
6NNU
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Xanthomonas citri Phospho-PGM in complex with glucose-1,6-phosphate
分子名称: 1,6-di-O-phosphono-alpha-D-glucopyranose, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Stiers, K.M, Beamer, L.J.
登録日2019-01-15
公開日2019-04-10
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Structural and dynamical description of the enzymatic reaction of a phosphohexomutase.
Struct Dyn., 6, 2019
6XXG
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BU of 6xxg by Molmil
Structure of truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Deinococcus radiodurans
分子名称: 1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase, CALCIUM ION, MAGNESIUM ION, ...
著者Gierse, R.M, Reddem, E, Grooves, M.R.
登録日2020-01-27
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Identification of a 1-deoxy-D-xylulose-5-phosphate synthase (DXS) mutant with improved crystallographic properties.
Biochem.Biophys.Res.Commun., 539, 2021
7V0H
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BU of 7v0h by Molmil
Crystal Structure of Putative glucose 1-dehydrogenase from Burkholderia cenocepacia in complex with NADP and a potential reaction product
分子名称: (2R)-2-(hydroxymethyl)pentanedioic acid, CALCIUM ION, GLYCEROL, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2022-05-10
公開日2022-06-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structure of Putative glucose 1-dehydrogenase from Burkholderia cenocepacia in complex with NADP and a potential reaction product
to be published
6HME
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BU of 6hme by Molmil
LOW-SALT STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA; CSNK2A1 gene product) IN COMPLEX WITH THE INDENOINDOLE-TYPE INHIBITOR THN27
分子名称: 1,2-ETHANEDIOL, 5-propan-2-yl-4-prop-2-enoxy-7,8-dihydro-6~{H}-indeno[1,2-b]indole-9,10-dione, CHLORIDE ION, ...
著者Niefind, K, Lindenblatt, D, Jose, J, Le Borgne, M.
登録日2018-09-12
公開日2019-03-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Diacritic Binding of an Indenoindole Inhibitor by CK2 alpha Paralogs Explored by a Reliable Path to Atomic Resolution CK2 alpha ' Structures.
Acs Omega, 4, 2019
8QGB
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BU of 8qgb by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
分子名称: 2-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylcarbamoyl]benzoic acid, CITRIC ACID, NAD kinase 1
著者Gelin, M, Labesse, G, Lionne, C.
登録日2023-09-05
公開日2025-03-19
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
To be published
7CCV
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BU of 7ccv by Molmil
Crystal structure of death-associated protein kinase 1 in complex with piceatannol
分子名称: Death-associated protein kinase 1, PICEATANNOL, SULFATE ION
著者Yokoyama, T, Suzuki, R, Mizuguchi, M.
登録日2020-06-18
公開日2021-01-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.753 Å)
主引用文献Crystal structure of death-associated protein kinase 1 in complex with the dietary compound resveratrol.
Iucrj, 8, 2020
3FQ1
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BU of 3fq1 by Molmil
Azurin C112D/M121I
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, COPPER (II) ION
著者Lancaster, K.M, Gray, H.B.
登録日2009-01-06
公開日2009-11-10
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Type Zero Copper Proteins.
Nat Chem, 1, 2009
3FQY
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Azurin C112D
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, COPPER (II) ION
著者Lancaster, K.M, Gray, H.B.
登録日2009-01-07
公開日2009-11-10
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Type Zero Copper Proteins.
Nat Chem, 1, 2009
9RCR
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BU of 9rcr by Molmil
1,2-propanediol dehydratase with 0.1 % 1,2-propanediol additive
分子名称: Glycyl radical protein, R-1,2-PROPANEDIOL
著者Kalnins, G, Estere, M.
登録日2025-05-29
公開日2025-06-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献1,2-propanediol dehydratase with 0.1 % 1,2-propanediol additive
To Be Published
5IKM
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BU of 5ikm by Molmil
1.9 Angstrom Crystal Structure of NS5 Methyl Transferase from Dengue Virus 1 in Complex with S-Adenosylmethionine and Beta-D-Fructopyranose.
分子名称: CHLORIDE ION, D-MALATE, GLYCEROL, ...
著者Minasov, G, Shuvalova, L, Winsor, J, Dubrovska, I, Flores, K, Shatsman, S, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2016-03-03
公開日2016-03-16
最終更新日2025-10-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献1.9 Angstrom Crystal Structure of NS5 Methyl Transferase from Dengue Virus 1 in Complex with S-Adenosylmethionine and Beta-D-Fructopyranose.
To Be Published
9QR1
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BU of 9qr1 by Molmil
Methyl-coenzyme M reductase of ANME-2d Candidatus Methanoperedens sp. BLZ2 from a bioreactor enrichment culture
分子名称: 1,2-ETHANEDIOL, 1-THIOETHANESULFONIC ACID, Coenzyme B, ...
著者Mueller, M.-C, Wagner, T.
登録日2025-04-02
公開日2025-07-16
最終更新日2025-09-17
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Atomic resolution structures of the methane-activating enzyme in anaerobic methanotrophy reveal extensive post-translational modifications.
Nat Commun, 16, 2025
8TIC
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BU of 8tic by Molmil
Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(2-methylpropyl)-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxylic acid, CHLORIDE ION, ...
著者Sudom, A, Min, X.
登録日2023-07-19
公開日2023-12-06
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Imidazolone as an Amide Bioisostere in the Development of beta-1,3- N -Acetylglucosaminyltransferase 2 (B3GNT2) Inhibitors.
J.Med.Chem., 66, 2023
6MKQ
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BU of 6mkq by Molmil
Carbapenemase VCC-1 bound to avibactam
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase
著者Mark, B.L, Vadlamani, G.
登録日2018-09-26
公開日2019-01-30
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular Basis for the Potent Inhibition of the Emerging Carbapenemase VCC-1 by Avibactam.
Antimicrob. Agents Chemother., 63, 2019
3DHC
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BU of 3dhc by Molmil
1.3 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homocysteine Bound to The catalytic Metal Center
分子名称: GLYCEROL, N-Acyl Homoserine Lactone Hydrolase, N-hexanoyl-L-homocysteine, ...
著者Liu, D, Momb, J, Thomas, P.W, Moulin, A, Petsko, G.A, Fast, W, Ringe, D.
登録日2008-06-17
公開日2008-07-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.
Biochemistry, 47, 2008
5WIY
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BU of 5wiy by Molmil
Kelch domain of human Keap1 bound to small molecule inhibitor fragment: 4-amino-1,7-dihydro-6H-pyrazolo[3,4-d]pyrimidine-6-thione
分子名称: 4-amino-1,7-dihydro-6H-pyrazolo[3,4-d]pyrimidine-6-thione, Kelch-like ECH-associated protein 1, SULFATE ION
著者Carolan, J.P, Lynch, A.J, Allen, K.N.
登録日2017-07-20
公開日2018-09-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Interaction Energetics and Druggability of the Protein-Protein Interaction between Kelch-like ECH-Associated Protein 1 (KEAP1) and Nuclear Factor Erythroid 2 Like 2 (Nrf2).
Biochemistry, 59, 2020
3DN6
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BU of 3dn6 by Molmil
1,3,5-trifluoro-2,4,6-trichlorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
分子名称: 1,3,5-trichloro-2,4,6-trifluorobenzene, 2-HYDROXYETHYL DISULFIDE, Lysozyme, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2008-11-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DO6
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BU of 3do6 by Molmil
Crystal structure of Putative Formyltetrahydrofolate Synthetase (TM1766) from THERMOTOGA MARITIMA at 1.85 A resolution
分子名称: 1,2-ETHANEDIOL, Formate--tetrahydrofolate ligase
著者Joint Center for Structural Genomics (JCSG)
登録日2008-07-03
公開日2008-09-02
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of Putative Formyltetrahydrofolate Synthetase (TM1766) from THERMOTOGA MARITIMA at 1.85 A resolution
To be published
8A18
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BU of 8a18 by Molmil
1.63 A resolution hydroquinone inhibited Sporosarcina pasteurii urease
分子名称: 1,2-ETHANEDIOL, HYDROXIDE ION, NICKEL (II) ION, ...
著者Mazzei, L, Ciurli, S, Cianci, M.
登録日2022-06-01
公開日2023-06-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Inhibition of Urease by Hydroquinones: A Structural and Kinetic Study.
Chemistry, 28, 2022
6N0U
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BU of 6n0u by Molmil
Crystal structure of a glucose-1-phosphate thymidylyltransferase from Burkholderia phymatum bound to 2'-deoxy-thymidine-B-L-rhamnose
分子名称: 1,2-ETHANEDIOL, 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE, Glucose-1-phosphate thymidylyltransferase
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2018-11-07
公開日2018-11-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a glucose-1-phosphate thymidylyltransferase from Burkholderia phymatum bound to 2'-deoxy-thymidine-B-L-rhamnose
To Be Published
5JNM
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BU of 5jnm by Molmil
Crystal structure of MtlD from Staphylococcus aureus at 1.7-Angstrom resolution
分子名称: Mannitol-1-phosphate 5-dehydrogenase, SULFATE ION
著者Ta, H.M, Nguyen, T, Kim, T, Kim, K.K.
登録日2016-04-30
公開日2017-11-08
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献Targeting Mannitol Metabolism as an Alternative Antimicrobial Strategy Based on the Structure-Function Study of Mannitol-1-Phosphate Dehydrogenase in Staphylococcus aureus.
Mbio, 10, 2019

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件を2025-12-03に公開中

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