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8C07
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BU of 8c07 by Molmil
Structure of HECT E3 UBR5 forming K48 linked Ubiquitin chains
分子名称: 5-azanylpentan-2-one, E3 ubiquitin-protein ligase UBR5, Polyubiquitin-B
著者Hehl, L.A, Prabu, J.R, Schulman, B.A.
登録日2022-12-16
公開日2023-08-23
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5.
Nat.Chem.Biol., 20, 2024
8C06
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BU of 8c06 by Molmil
Structure of Dimeric HECT E3 Ubiquitin Ligase UBR5
分子名称: E3 ubiquitin-protein ligase UBR5, ZINC ION
著者Hehl, L.A, Prabu, J.R, Schulman, B.A.
登録日2022-12-16
公開日2023-08-23
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5.
Nat.Chem.Biol., 20, 2024
2GBS
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BU of 2gbs by Molmil
NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3
分子名称: Hypothetical protein Rpa0253
著者Ramelot, T.A, Cort, J.R, Conover, K, Chen, Y, Ma, L.C, Ciano, M, Xiao, R, Acton, T.B, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG)
登録日2006-03-11
公開日2006-04-11
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural genomics reveals EVE as a new ASCH/PUA-related domain.
Proteins, 75, 2009
8CAF
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BU of 8caf by Molmil
N8C_Fab3b in complex with NEDD8-CUL1(WHB)
分子名称: Cullin-1, Fab Heavy Chain, Fab Light Chain, ...
著者Duda, D.M, Yanishevski, D, Henneberg, L.T, Schulman, B.A.
登録日2023-01-24
公開日2023-09-13
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Activity-based profiling of cullin-RING E3 networks by conformation-specific probes.
Nat.Chem.Biol., 19, 2023
8C0T
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BU of 8c0t by Molmil
NRS 1.2: Fluorescent Sensors for Imaging Interstitial Calcium
分子名称: CALCIUM ION, SULFATE ION, mNeonGreen,Optimized Ratiometric Calcium Sensor
著者Basquin, J, Griesbeck, O, Valiente-Gabioud, A.
登録日2022-12-19
公開日2023-11-15
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Fluorescent sensors for imaging of interstitial calcium.
Nat Commun, 14, 2023
8COI
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BU of 8coi by Molmil
Human adenovirus-derived synthetic ADDobody binder
分子名称: ADDobody
著者Buzas, D, Toelzer, C, Gupta, K, Berger-Schaffitzel, C, Berger, I.
登録日2023-02-28
公開日2023-12-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.17 Å)
主引用文献Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders.
Structure, 32, 2024
3NY6
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BU of 3ny6 by Molmil
Catalytic fragment of cholix toxin from vibrio cholerae in complex with inhibitor V30
分子名称: 2-[(5,6-dimethyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-(2-hydroxyethyl)acetamide, Cholix toxin, GLYCEROL, ...
著者Merrill, A.R, Jorgensen, R.
登録日2010-07-14
公開日2010-12-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Newly discovered and characterized antivirulence compounds inhibit bacterial mono-ADP-ribosyltransferase toxins.
Antimicrob.Agents Chemother., 55, 2011
3O1X
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BU of 3o1x by Molmil
High resolution crystal structure of histidine triad nucleotide-binding protein 1 (Hint1) C84A mutant from rabbit complexed with adenosine
分子名称: ADENOSINE, Histidine triad nucleotide-binding protein 1, SODIUM ION
著者Dolot, R.M, Ozga, M, Krakowiak, A.K, Nawrot, B, Stec, W.J.
登録日2010-07-22
公開日2010-08-04
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Histidine Triad Nucleotide-binding Protein 1 (HINT-1) Phosphoramidase Transforms Nucleoside 5'-O-Phosphorothioates to Nucleoside 5'-O-Phosphates.
J.Biol.Chem., 285, 2010
3NJV
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BU of 3njv by Molmil
Rhamnogalacturonan lyase from Aspergillus aculeatus K150A substrate complex
分子名称: CALCIUM ION, Rhamnogalacturonase B, SULFATE ION, ...
著者Jensen, M.H, Otten, H, Christensen, U, Borchert, T.V, Christensen, L.L.H, Larsen, S, Lo Leggio, L.
登録日2010-06-18
公開日2010-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and Biochemical Studies Elucidate the Mechanism of Rhamnogalacturonan Lyase from Aspergillus aculeatus.
J.Mol.Biol., 404, 2010
6ZSH
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BU of 6zsh by Molmil
The mechanism of activation of the actin binding protein EHBP1 by Rab8 family members
分子名称: EH domain-binding protein 1
著者Rai, A, Bleimling, N, Vetter, I.R, Goody, R.S.
登録日2020-07-15
公開日2020-09-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The mechanism of activation of the actin binding protein EHBP1 by Rab8 family members.
Nat Commun, 11, 2020
3NZ8
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BU of 3nz8 by Molmil
Crystal structure of the HIV-2 neutralizing Fab fragment 7C8
分子名称: GLYCEROL, Mouse anti V3 antibody 7C8 Fab, heavy chain, ...
著者Uchtenhagen, H, Friemann, R, Raszewski, G, Spetz, A.-L, Nilsson, L, Achour, A.
登録日2010-07-16
公開日2011-05-18
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of the HIV-2 Neutralizing Fab Fragment 7C8 with High Specificity to the V3 Region of gp125.
Plos One, 6, 2011
3PV5
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BU of 3pv5 by Molmil
Structure of Legionella fallonii DegQ (N189G/P190G variant)
分子名称: DegQ
著者Wrase, R, Scott, H, Hilgenfeld, R, Hansen, G.
登録日2010-12-06
公開日2011-06-15
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Legionella HtrA homologue DegQ is a self-compartmentizing protease that forms large 12-meric assemblies.
Proc.Natl.Acad.Sci.USA, 108, 2011
3OER
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BU of 3oer by Molmil
Crystal structure of trimeric frataxin from the yeast saccharomyces cerevisiae, complexed with cobalt
分子名称: COBALT (II) ION, Frataxin homolog, mitochondrial
著者Soderberg, C.A.G, Rajan, S, Gakh, O, Ta, C, Isaya, G, Al-Karadaghi, S.
登録日2010-08-13
公開日2011-08-24
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Oligomerization Propensity and Flexibility of Yeast Frataxin Studied by X-ray Crystallography and Small-Angle X-ray Scattering.
J.Mol.Biol., 414, 2011
3OEQ
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BU of 3oeq by Molmil
Crystal structure of trimeric frataxin from the yeast Saccharomyces cerevisiae, with full length n-terminus
分子名称: Frataxin homolog, mitochondrial
著者Soderberg, C.A.G, Rajan, S, Gakh, O, Ta, C, Isaya, G, Al-Karadaghi, S.
登録日2010-08-13
公開日2011-08-24
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献Oligomerization Propensity and Flexibility of Yeast Frataxin Studied by X-ray Crystallography and Small-Angle X-ray Scattering.
J.Mol.Biol., 414, 2011
3QGZ
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BU of 3qgz by Molmil
Re-investigated high resolution crystal structure of histidine triad nucleotide-binding protein 1 (HINT1) from rabbit complexed with adenosine
分子名称: ADENOSINE, Histidine triad nucleotide-binding protein 1
著者Dolot, R.M, Ozga, M, Krakowiak, A, Nawrot, B, Stec, W.J.
登録日2011-01-25
公開日2011-02-16
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High-resolution X-ray crystal structure of rabbit histidine triad nucleotide-binding protein 1 (rHINT1) - adenosine complex at 1.10A resolution
Acta Crystallogr.,Sect.D, 67, 2011
3QUL
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BU of 3qul by Molmil
Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with LCMV-derived gp33 altered peptide ligand (Y4S)
分子名称: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-B alpha chain, ...
著者Allerbring, E, Duru, A.D, Uchtenhagen, H, Madhurantakam, C, Grimm, S, Tomek, M.B, Mazumdar, P.A, Spetz, A, Friemann, R, Sandalova, T, Uhlin, M, Nygren, P, Achour, A.
登録日2011-02-24
公開日2012-03-21
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Unexpected T-cell recognition of an altered peptide ligand is driven by reversed thermodynamics.
Eur.J.Immunol., 42, 2012
7A7B
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BU of 7a7b by Molmil
Bacillithiol Disulfide Reductase Bdr (YpdA) from Staphylococcus aureus
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, YpdA family putative bacillithiol disulfide reductase Bdr
著者Hammerstad, M, Hersleth, H.-P.
登録日2020-08-27
公開日2020-12-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The Crystal Structures of Bacillithiol Disulfide Reductase Bdr (YpdA) Provide Structural and Functional Insight into a New Type of FAD-Containing NADPH-Dependent Oxidoreductase.
Biochemistry, 59, 2020
7AED
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BU of 7aed by Molmil
VirB8 domain of PrgL from Enterococcus faecalis pCF10
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PrgL
著者Jaeger, F, Berntsson, R.P.A.
登録日2020-09-17
公開日2020-11-18
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.753 Å)
主引用文献Structure of the enterococcal T4SS protein PrgL reveals unique dimerization interface in the VirB8 protein family.
Structure, 30, 2022
6I76
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BU of 6i76 by Molmil
Galectin-3C in complex with substituted polyfluoroaryl monothiogalactoside derivative-3
分子名称: (2~{R},3~{R},4~{S},5~{R},6~{S})-4-[4-[4-azido-2,3,5,6-tetrakis(fluoranyl)phenyl]-1,2,3-triazol-1-yl]-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-oxane-3,5-diol, Galectin-3
著者Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
登録日2018-11-15
公開日2019-01-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Substituted polyfluoroaryl interactions with an arginine side chain in galectin-3 are governed by steric-, desolvation and electronic conjugation effects.
Org. Biomol. Chem., 17, 2019
3EAN
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BU of 3ean by Molmil
Crystal structure of recombinant rat selenoprotein thioredoxin reductase 1 with reduced C-terminal tail
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Thioredoxin reductase 1
著者Sandalova, T, Cheng, Q, Lindqvist, Y, Arner, E.
登録日2008-08-26
公開日2008-12-02
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Crystal structure and catalysis of the selenoprotein thioredoxin reductase 1.
J.Biol.Chem., 284, 2009
6I8C
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BU of 6i8c by Molmil
Crystal structure of the murine beta-2-microglobulin.
分子名称: Beta-2-microglobulin, TRIETHYLENE GLYCOL
著者Achour, A, Sandalova, T, Ricagno, S, Sun, R.
登録日2018-11-20
公開日2019-10-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Biochemical and biophysical comparison of human and mouse beta-2 microglobulin reveals the molecular determinants of low amyloid propensity.
Febs J., 287, 2020
7Z6Q
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BU of 7z6q by Molmil
Cryo-EM structure of the whole photosynthetic complex from the green sulfur bacteria
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BACTERIOCHLOROPHYLL A, Bacteriochlorophyll A isomer, ...
著者Xie, H, Tsiotis, G.
登録日2022-03-14
公開日2023-02-08
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Cryo-EM structure of the whole photosynthetic reaction center apparatus from the green sulfur bacterium Chlorobaculum tepidum.
Proc.Natl.Acad.Sci.USA, 120, 2023
6I9Z
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urate oxidase under 65 bar of argon
分子名称: 8-AZAXANTHINE, ARGON, SODIUM ION, ...
著者Prange, T, Colloc'h, N, Carpentier, P.
登録日2018-11-26
公開日2019-12-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Comparative study of the effects of high hydrostatic pressure per se and high argon pressure on urate oxidase ligand stabilization
Acta Cryst. D, 78, 2022
7ABX
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BU of 7abx by Molmil
Perdeuterated E65Q-TIM complexed with 2-PHOSPHOGLYCOLIC ACID
分子名称: 2-PHOSPHOGLYCOLIC ACID, Triosephosphate isomerase
著者Kelpsas, V, Caldararu, O, von Wachenfeldt, C, Oksanen, E.
登録日2020-09-09
公開日2021-07-28
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Neutron structures of Leishmania mexicana triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps.
Iucrj, 8, 2021
7ZBZ
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BU of 7zbz by Molmil
CAND1 delhairpin-SCF-SKP2 CAND1 partly engaged SCF partly rocked
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2022-03-24
公開日2023-04-19
最終更新日2023-05-10
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023

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件を2024-07-17に公開中

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