PDB: 45459 件ウェブページステータス検索Chemie searchBIRD

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6C4H	Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region) 分子名称: 23S rRNA, 50S ribosomal protein L16, 50S ribosomal protein L2, ... 著者 Zeng, F, Jin, H. 登録日 2018-01-12 公開日 2018-02-21 最終更新日 2020-01-08 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination. Sci Rep, 8, 2018
6R5Q	Structure of XBP1u-paused ribosome nascent chain complex (post-state) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2019-03-25 公開日 2019-07-10 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019
5LQP	Cryo-EM reconstruction of bacteriophage AP205 virus-like particles. 分子名称: Coat protein 著者 Diebolder, C.A, Rumnieks, J, Tars, K, Koning, R.I. 登録日 2016-08-17 公開日 2016-12-14 最終更新日 2019-10-23 実験手法 ELECTRON MICROSCOPY (6 Å) 主引用文献 Structure of AP205 Coat Protein Reveals Circular Permutation in ssRNA Bacteriophages. J. Mol. Biol., 428, 2016
5LFB	Structure of the bacterial sex F pilus (12.5 Angstrom rise) 分子名称: Pilin, [(2~{S})-3-[[(2~{R})-2,3-bis(oxidanyl)propoxy]-oxidanyl-phosphoryl]oxy-2-hexadec-9-enoyloxy-propyl] hexadecanoate 著者 Costa, T.R.D, Ilangovan, I, Ukleja, M, Redzej, A, Santini, J.M, Smith, T.K, Egelman, E.H, Waksman, G. 登録日 2016-06-30 公開日 2016-11-02 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 Structure of the Bacterial Sex F Pilus Reveals an Assembly of a Stoichiometric Protein-Phospholipid Complex. Cell, 166, 2016
2NOL	Structure of catalytically inactive human 8-oxoguanine glycosylase distal crosslink to oxoG DNA 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', CALCIUM ION, ... 著者 Banerjee, A, Radom, C.T, Verdine, G.L. 登録日 2006-10-25 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations. J.Biol.Chem., 282, 2007
8ZC3	SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D1F6 Fab, ... 著者 Liu, B, Gao, X, Li, Z, Chen, Q, He, J, Xiong, X. 登録日 2024-04-28 公開日 2024-05-15 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (4.69 Å) 主引用文献 An unconventional VH1-2 antibody tolerates escape mutations and shows an antigenic hotspot on SARS-CoV-2 spike. Cell Rep, 43, 2024
6RD3	Crystal structure of the wild type OmpK36 from Klebsiella pneumonia 分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MAGNESIUM ION, OmpK36 著者 Beis, K, Romano, M, Kwong, J. 登録日 2019-04-12 公開日 2019-09-11 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 OmpK36-mediated Carbapenem resistance attenuates ST258 Klebsiella pneumoniae in vivo. Nat Commun, 10, 2019
6RDQ	Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1D, composite map 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ... 著者 Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W. 登録日 2019-04-12 公開日 2019-07-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling. Science, 364, 2019
6H30	The crystal structure of SBD1-SBD2 tandem of GlnPQ transporter 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, DI(HYDROXYETHYL)ETHER, ... 著者 Schuurman-Wolters, G.K, Guskov, A, Poolman, B. 登録日 2018-07-17 公開日 2019-08-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The crystal structure of SBD1-SBD2 tandem of GlnPQ transporter To Be Published
6H4N	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ... 著者 Beckert, B, Turk, M, Czech, A, Berninghausen, O, Beckmann, R, Ignatova, Z, Plitzko, J, Wilson, N.D. 登録日 2018-07-22 公開日 2018-09-05 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1. Nat Microbiol, 3, 2018
9DNA	CRYSTAL STRUCTURE ANALYSIS OF AN A-DNA FRAGMENT AT 1.8 ANGSTROMS RESOLUTION. D(GCCCGGGC) 分子名称: DNA (5'-D(*GP*CP*CP*CP*GP*GP*GP*C)-3') 著者 Heinemann, U. 登録日 1987-07-10 公開日 1988-01-16 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure analysis of an A-DNA fragment at 1.8 A resolution: d(GCCCGGGC). Nucleic Acids Res., 15, 1987
6RD4	CryoEM structure of Polytomella F-ATP synthase, Full dimer, composite map 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ... 著者 Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W. 登録日 2019-04-12 公開日 2019-07-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling. Science, 364, 2019
6GSM	Structure of a partial yeast 48S preinitiation complex in open conformation. 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0, 40S ribosomal protein S1, ... 著者 Llacer, J.L, Hussain, T, Gordiyenko, Y, Ramakrishnan, V. 登録日 2018-06-14 公開日 2019-07-31 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (5.15 Å) 主引用文献 Large-scale movement of eIF3 domains during translation initiation modulate start codon selection. Nucleic Acids Res., 2021
6RDR	Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1D, monomer-masked refinement 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ... 著者 Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W. 登録日 2019-04-12 公開日 2019-07-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling. Science, 364, 2019
6RE8	Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 2D, composite map 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ... 著者 Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W. 登録日 2019-04-12 公開日 2019-07-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling. Science, 364, 2019
6GVS	Engineered glycolyl-CoA reductase comprising 8 mutations with bound NADP+ 分子名称: Aldehyde dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION 著者 Zarzycki, J, Trudeau, D, Scheffen, M, Erb, T.J, Tawfik, D.S. 登録日 2018-06-21 公開日 2018-11-28 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.579 Å) 主引用文献 Design and in vitro realization of carbon-conserving photorespiration. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6R84	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R. 登録日 2019-03-31 公開日 2019-06-26 最終更新日 2019-07-10 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis. Nature, 570, 2019
6GZZ	T. thermophilus hibernating 100S ribosome (amc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Flygaard, R.K, Jenner, L.B. 登録日 2018-07-05 公開日 2018-10-24 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.13 Å) 主引用文献 Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism. Nat Commun, 9, 2018
6QVK	The cryo-EM structure of bacteriophage phi29 prohead 分子名称: Capsid fiber protein, Major capsid protein 著者 Xu, J, Gui, M, Xiang, Y. 登録日 2019-03-03 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural assembly of the tailed bacteriophage φ29. Nat Commun, 10, 2019
6GXM	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N. 登録日 2018-06-27 公開日 2018-08-22 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nat Commun, 9, 2018
5JIA	The Crystal Structure Of IUS-SPRY Domain From RanBP10 分子名称: IMIDAZOLE, Ran-binding protein 10 著者 Hong, S.K, Kim, K.-H, Kim, E.E. 登録日 2016-04-22 公開日 2016-11-09 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Basis for the Interaction between the IUS-SPRY Domain of RanBPM and DDX-4 in Germ Cell Development. J.Mol.Biol., 428, 2016
5JKL	Binary crystal structure of positively and negatively supercharged variants Ftn(pos) and Ftn(neg) from human heavy chain ferritin (Mg formate condition) 分子名称: CHLORIDE ION, FE (III) ION, Ferritin heavy chain, ... 著者 Kuenzle, M, Beck, T. 登録日 2016-04-26 公開日 2016-10-26 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Binary Protein Crystals for the Assembly of Inorganic Nanoparticle Superlattices. J.Am.Chem.Soc., 138, 2016
5JJM	Crystal Structure of Homodimeric Androgen Receptor Ligand-Binding Domain bound to DHT and LxxLL peptide 分子名称: 1,2-ETHANEDIOL, 5-ALPHA-DIHYDROTESTOSTERONE, ACETATE ION, ... 著者 Estebanez-Perpina, E, Fuentes-Prior, P. 登録日 2016-04-24 公開日 2017-03-15 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure of the homodimeric androgen receptor ligand-binding domain. Nat Commun, 8, 2017
6H0B	Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the diglycopeptide 6. 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose, ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO-GLY, ... 著者 de las Rivas, M, Daniel, E.J.P, Coelho, H, Lira-Navarrete, E, Raich, L, Companon, I, Diniz, A, Lagartera, L, Jimenez-Barbero, J, Clausen, H, Rovira, C, Marcelo, F, Corzana, F, Gerken, T.A, Hurtado-Guerrero, R. 登録日 2018-07-08 公開日 2018-10-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural and Mechanistic Insights into the Catalytic-Domain-Mediated Short-Range Glycosylation Preferences of GalNAc-T4. ACS Cent Sci, 4, 2018
6RDC	CryoEM structure of Polytomella F-ATP synthase, Primary rotary state 2, composite map 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ASA-10: Polytomella F-ATP synthase associated subunit 10, ... 著者 Murphy, B.J, Klusch, N, Yildiz, O, Kuhlbrandt, W. 登録日 2019-04-12 公開日 2019-07-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling. Science, 364, 2019

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