PDB: 10938 件ウェブページステータス検索Chemie searchBIRD

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8JLD	Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.48 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
8JLB	Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.36 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
5XAH	Crystal structure of human Importin4 分子名称: Importin-4 著者 Song, J.J, Yoon, J. 登録日 2017-03-13 公開日 2018-02-14 最終更新日 2018-04-11 実験手法 X-RAY DIFFRACTION (3.004 Å) 主引用文献 Integrative Structural Investigation on the Architecture of Human Importin4_Histone H3/H4_Asf1a Complex and Its Histone H3 Tail Binding J. Mol. Biol., 430, 2018
4U7P	Crystal structure of DNMT3A-DNMT3L complex 分子名称: DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE, ... 著者 Wang, L, Guo, X, Li, J, Xiao, J, Yin, X, He, S, Wang, J, Xu, Y. 登録日 2014-07-31 公開日 2014-11-12 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.821 Å) 主引用文献 Structural insight into autoinhibition and histone H3-induced activation of DNMT3A Nature, 517, 2015
6LKB	Crystal Structure of the peptidylprolyl isomerase domain of Arabidopsis thaliana CYP71. 分子名称: COBALT (II) ION, GLYCEROL, PHOSPHATE ION, ... 著者 Lakhanpal, S, Jobichen, C, Swaminathan, K. 登録日 2019-12-18 公開日 2020-12-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.651 Å) 主引用文献 Structural and functional analyses of the PPIase domain of Arabidopsis thaliana CYP71 reveal its catalytic activity toward histone H3. Febs Lett., 595, 2021
5KDM	Crystal structure of EBV tegument protein BNRF1 in complex with histone chaperone DAXX and histones H3.3-H4 分子名称: Death domain-associated protein 6, Histone H3.3, Histone H4, ... 著者 Huang, H, Patel, D. 登録日 2016-06-08 公開日 2016-09-07 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis underlying viral hijacking of a histone chaperone complex. Nat Commun, 7, 2016
6YN1	Crystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer 分子名称: Aprataxin and PNK-like factor, CHLORIDE ION, GLYCEROL, ... 著者 Corbeski, I, Guo, X, Van Ingen, H, Sixma, T.K. 登録日 2020-04-10 公開日 2021-11-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF. Sci Adv, 8, 2022
2B2Y	Tandem chromodomains of human CHD1 分子名称: Chromodomain-helicase-DNA-binding protein 1 著者 Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. 登録日 2005-09-19 公開日 2005-12-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
5XM1	The mouse nucleosome structure containing H2A, H2B type3-A, H3mm7, and H4 分子名称: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Taguchi, H, Horikoshi, N, Kurumizaka, H. 登録日 2017-05-12 公開日 2018-03-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Nat Commun, 9, 2018
7K7G	nucleosome and Gal4 complex 分子名称: Centromere DNA-binding protein complex CBF3 subunit B, DNA (147-MER), Histone H2A.1, ... 著者 Ruifang, G, Yawen, B. 登録日 2020-09-22 公開日 2021-03-31 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural and dynamic mechanisms of CBF3-guided centromeric nucleosome formation. Nat Commun, 12, 2021
7TRL	Crystal structure of human BIRC2 BIR3 domain in complex with histone H3 分子名称: 1,2-ETHANEDIOL, Baculoviral IAP repeat-containing protein 2, Histone H3, ... 著者 Klein, B.J, Tencer, A.H, Kutateladze, T.G. 登録日 2022-01-29 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Molecular basis for nuclear accumulation and targeting of the inhibitor of apoptosis BIRC2. Nat.Struct.Mol.Biol., 30, 2023
2F6J	Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state 分子名称: ZINC ION, bromodomain PHD finger transcription factor, histone H3, ... 著者 Li, H, Patel, D.J. 登録日 2005-11-29 公開日 2006-07-11 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006
3W98	Crystal Structure of Human Nucleosome Core Particle lacking H3.1 N-terminal region 分子名称: 146-mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Iwasaki, W, Miya, Y, Horikoshi, N, Osakabe, A, Tachiwana, H, Shibata, T, Kagawa, W, Kurumizaka, H. 登録日 2013-04-01 公開日 2013-08-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.42 Å) 主引用文献 Contribution of histone N-terminal tails to the structure and stability of nucleosomes FEBS Open Bio, 3, 2013
2HUE	Structure of the H3-H4 chaperone Asf1 bound to histones H3 and H4 分子名称: Anti-silencing protein 1, GLYCEROL, Histone H3, ... 著者 English, C.M, Churchill, M.E.A, Tyler, J.K. 登録日 2006-07-26 公開日 2006-11-21 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural basis for the histone chaperone activity of asf1. Cell(Cambridge,Mass.), 127, 2006
7Y5U	Cryo-EM structure of the monomeric human CAF1LC-H3-H4 complex 分子名称: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... 著者 Liu, C.P, Yu, Z.Y, Yu, C, Xu, R.M. 登録日 2022-06-17 公開日 2023-08-16 最終更新日 2023-09-06 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7Y5V	Cryo-EM structure of the dimeric human CAF1LC-H3-H4 complex 分子名称: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... 著者 Liu, C.P, Yu, C, Yu, Z.Y, Xu, R.M. 登録日 2022-06-17 公開日 2023-08-16 最終更新日 2023-09-06 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
7KEZ	Crystal structure of bH1 Fab variant (CDR H3 loop design 16_0325) in complex with VEGF 分子名称: CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, anti-VEGF-A Fab bH1 heavy chain, ... 著者 Shi, R, Manenda, M.S, Picard, M.-E. 登録日 2020-10-13 公開日 2021-11-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF to be published
7KF1	Crystal structure of bH1 Fab variant (CDR H3 loop design 14_0130) in complex with VEGF 分子名称: CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, anti-VEGF-A Fab bH1 heavy chain, ... 著者 Shi, R, Picard, M.-E, Manenda, M.S. 登録日 2020-10-13 公開日 2021-11-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF to be published
7KF0	Crystal structure of bH1 Fab variant (CDR H3 loop design 13_0346) in complex with VEGF 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Isoform L-VEGF206 of Vascular endothelial growth factor A, ... 著者 Shi, R, Picard, M.-E. 登録日 2020-10-13 公開日 2021-11-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Crystal structure of bH1 Fab CDR H3 loop variants in apo form and in complex with VEGF to be published
7VCQ	structure of viral protein BKRF4 in complex with H3.3-H4-ASF1 分子名称: Histone H3.3, Histone H4, Histone chaperone ASF1B, ... 著者 Liu, Y.R. 登録日 2021-09-03 公開日 2022-08-03 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Epstein-Barr Virus Tegument Protein BKRF4 is a Histone Chaperone. J.Mol.Biol., 434, 2022
2LH0	NMR structure of the histone-interacting N-terminal homodimeric region of Rtt106 分子名称: Histone chaperone RTT106 著者 Hu, Q, Cui, G, Mer, G. 登録日 2011-08-04 公開日 2012-02-01 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106. Nature, 483, 2012
1XNI	Tandem Tudor Domain of 53BP1 分子名称: Tumor suppressor p53-binding protein 1 著者 Huyen, Y, Zgheib, O, DiTullio Jr, R.A, Gorgoulis, V.G, Zacharatos, P, Petty, T.J, Sheston, E.A, Mellert, H.S, Stavridi, E.S, Halazonetis, T.D. 登録日 2004-10-05 公開日 2004-11-30 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks Nature, 432, 2004
3A1B	Crystal structure of the DNMT3A ADD domain in complex with histone H3 分子名称: 1,2-ETHANEDIOL, DNA (cytosine-5)-methyltransferase 3A, Histone H3.1, ... 著者 Otani, J, Arita, K, Ariyoshi, M, Shirakawa, M. 登録日 2009-03-28 公開日 2009-11-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.292 Å) 主引用文献 Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain Embo Rep., 10, 2009
5T1I	CBX3 chromo shadow domain in complex with histone H3 peptide 分子名称: Chromobox protein homolog 3, Histone H3.1, UNKNOWN ATOM OR ION 著者 Liu, Y, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2016-08-19 公開日 2016-09-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Peptide recognition by heterochromatin protein 1 (HP1) chromoshadow domains revisited: Plasticity in the pseudosymmetric histone binding site of human HP1. J. Biol. Chem., 292, 2017
4A7J	Symmetric Dimethylation of H3 Arginine 2 is a Novel Histone Mark that Supports Euchromatin Maintenance 分子名称: HISTONE H3.1T, WD REPEAT-CONTAINING PROTEIN 5 著者 Migliori, V, Muller, J, Phalke, S, Low, D, Bezzi, M, ChuenMok, W, Gunaratne, J, Capasso, P, Bassi, C, Cecatiello, V, DeMarco, A, Blackstock, W, Kuznetsov, V, Amati, B, Mapelli, M, Guccione, E. 登録日 2011-11-14 公開日 2012-01-11 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Symmetric Dimethylation of H3R2 is a Newly Identified Histone Mark that Supports Euchromatin Maintenance Nat.Struct.Mol.Biol., 19, 2012

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