PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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1IN1	NMR STRUCTURE OF HUMAN DNA LIGASE IIIALPHA BRCT DOMAIN 分子名称: DNA LIGASE III 著者 Krishnan, V.V, Thornton, K.H, Thelen, M.P, Cosman, M. 登録日 2001-05-11 公開日 2001-05-25 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of the human DNA ligase IIIalpha BRCT domain Biochemistry, 40, 2001
1IMO	NMR STRUCTURE OF HUMAN DNA LIGASE IIIALPHA BRCT DOMAIN 分子名称: DNA LIGASE III 著者 Krishnan, V.V, Thornton, K.H, Thelen, M.P, Cosman, M. 登録日 2001-05-11 公開日 2001-05-25 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of the human DNA ligase IIIalpha BRCT domain Biochemistry, 40, 2001
2M1V	NMR solution structure of the d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid 分子名称: DNA_(5'-D(*CP*AP*GP*TP*GP*TP*C)-3')_, RNA (29-MER) 著者 Skilandat, M, Sigel, R.K.O. 登録日 2012-12-07 公開日 2014-06-11 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 The Role of Mg(II) in DNA Cleavage Site Recognition in Group II Intron Ribozymes: SOLUTION STRUCTURE AND METAL ION BINDING SITES OF THE RNADNA COMPLEX. J.Biol.Chem., 289, 2014
2KY8	Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target methylated DNA sequence 分子名称: DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*(TED)P*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*TP*(5CM)P*GP*GP*CP*(TED)P*C)-3'), MANGANESE (II) ION, ... 著者 Williams Jr, D.C, Scarsdale Jr, J.N. 登録日 2010-05-18 公開日 2011-05-18 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence. Nucleic Acids Res., 39, 2011
4NZV	DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities 分子名称: Exonuclease, putative, MANGANESE (II) ION 著者 Shibata, A, Moiani, D, Arvai, A.S, Perry, J, Harding, S.M, Genois, M, Maity, R, Rossum-Fikkert, S, Kertokalio, A, Romoli, F, Ismail, A, Ismalaj, E, Petricci, E, Neale, M.J, Bristow, R.G, Masson, J, Wyman, C, Jeggo, P.A, Tainer, J.A. 登録日 2013-12-12 公開日 2014-01-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell, 53, 2014
2N2D	Structure of DNA G-quadruplex adopted by ALS and FTD related GGGGCC repeat with G21 to Br-G21 substitution 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3') 著者 Brcic, J, Plavec, J. 登録日 2015-05-06 公開日 2015-09-23 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution. Nucleic Acids Res., 43, 2015
4HD0	Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair 分子名称: DNA double-strand break repair protein Mre11, MANGANESE (II) ION 著者 Limbo, O, Moiani, D, Kertokalio, A, Wyman, C, Tainer, J.A, Russell, P. 登録日 2012-10-01 公開日 2012-10-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair. Nucleic Acids Res., 40, 2012
2MCJ	NMR structure of spermine modified DNA duplex 分子名称: DNA_(5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3') 著者 Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T. 登録日 2013-08-20 公開日 2014-01-22 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine. Biochim.Biophys.Acta, 1840, 2014
2HMR	Solution structure of reduced interstrand cross-link arising from S-alpha-methyl-gamma-OH-1,N2-propano-2'-deoxyguanosine in the 5'-CpG-3' DNA sequence 分子名称: DNA dodecamer with interstrand cross-link 著者 Cho, Y.-J, Kozekov, I.D, Harris, T.M, Rizzo, C.J, Stone, M.P. 登録日 2006-07-11 公開日 2007-03-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R- and S-alpha-CH(3)-gamma-OH-1,N(2)-Propano-2'-deoxyguanosine in the 5'-CpG-3' DNA Sequence Biochemistry, 46, 2007
2HMD	Stereochemistry Modulates Stability of Reduced Inter-Strand Cross-Links Arising From R- and S-alpha-methyl-gamma-OH-1,N2-propano-2'-Deoxyguanine in the 5'-CpG-3' DNA Sequence 分子名称: DNA dodecamer with interstrand cross-link 著者 Cho, Y.-J, Kozekov, I.D, Harris, T.M, Rizzo, C.J, Stone, M.P. 登録日 2006-07-11 公開日 2007-03-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R- and S-alpha-CH(3)-gamma-OH-1,N(2)-Propano-2'-deoxyguanosine in the 5'-CpG-3' DNA Sequence Biochemistry, 46, 2007
1GN7	NMR STRUCTURE OF AN INTRAMOLECULAR DNA TRIPLEX CONTAINING AN N7-GLYCOSYLATED GUANINE, 8 STRUCTURES 分子名称: DNA (5'-D (*AP*GP*AP*GP*AP*GP*AP*AP*CP*CP*CP*CP*TP*TP*CP*TP*CP*TP* CP*TP*TP*AP*TP*AP*TP*CP*TP*GN7*TP*CP*TP*T)-3') 著者 Schultze, P, Koshlap, K.M, Feigon, J. 登録日 1996-11-22 公開日 1997-05-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of an intramolecular DNA triplex containing an N7-glycosylated guanine which mimics a protonated cytosine. Biochemistry, 36, 1997
2MCI	NMR structure of DNA duplex 分子名称: DNA_(5'-D(*CP*AP*GP*CP*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3') 著者 Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T. 登録日 2013-08-20 公開日 2014-01-22 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine. Biochim.Biophys.Acta, 1840, 2014
4HYP	Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. 分子名称: DNA gyrase subunit B, MAGNESIUM ION, N-[7-(1H-imidazol-1-yl)-2-(pyridin-3-yl)[1,3]thiazolo[5,4-d]pyrimidin-5-yl]cyclopropanecarboxamide 著者 Bensen, D.C, Creighton, C.J, Tari, L.W. 登録日 2012-11-13 公開日 2013-02-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. Bioorg.Med.Chem.Lett., 23, 2013
2MMF	Solution structure of AGA modified 分子名称: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*AP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*TP*CP*TP*TP*AP*G)-3') 著者 Li, L, Stone, M. 登録日 2014-03-14 公開日 2015-02-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct. Chem.Res.Toxicol., 28, 2015
2MMR	AGC FAPY modified duplex Major isomer 分子名称: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*CP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*GP*CP*TP*TP*AP*G)-3') 著者 Li, L, Stone, M. 登録日 2014-03-17 公開日 2015-02-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct. Chem.Res.Toxicol., 28, 2015
2MMS	AG(7-deaza)G FAPY modified duplex 分子名称: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3') 著者 Li, L, Stone, M. 登録日 2014-03-17 公開日 2015-02-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct. Chem.Res.Toxicol., 28, 2015
4FP6	DNA octamer d(gtggccac) with 2'-se modification 分子名称: CHLORIDE ION, DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3') 著者 Zhang, W, Sheng, J, Huang, Z. 登録日 2012-06-21 公開日 2012-08-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.28 Å) 主引用文献 DNA octamer d(gtggccac) with 2'-se modification TO BE PUBLISHED
2MMQ	Solution structure of AGT FAPY Modified duplex 分子名称: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*TP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*AP*CP*TP*TP*AP*G)-3') 著者 Li, L, Stone, M. 登録日 2014-03-17 公開日 2015-02-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct. Chem.Res.Toxicol., 28, 2015
2MJX	Solution NMR structure of a mismatch DNA 分子名称: DNA (5'-D(*CP*GP*CP*GP*TP*AP*CP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*CP*AP*TP*GP*CP*TP*AP*CP*GP*CP*G)-3') 著者 Ghosh, A, Kumar, K.R, Bhunia, A, Chatterjee, S. 登録日 2014-01-21 公開日 2014-03-05 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Double GC:GC mismatch in dsDNA enhances local dynamics retaining the DNA footprint: a high-resolution NMR study Chemmedchem, 9, 2014
225D	A TETRAMERIC DNA STRUCTURE WITH PROTONATED CYTOSINE:CYTOSINE BASE PAIRS 分子名称: DNA (5'-D(*TP*CP*CP*CP*CP*C)-3') 著者 Gehring, K, Leroy, J.L, Gueron, M. 登録日 1995-07-12 公開日 1995-10-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 A tetrameric DNA structure with protonated cytosine.cytosine base pairs. Nature, 363, 1993
2MRO	Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1) 分子名称: DNA damage-inducible protein 1, Polyubiquitin-B 著者 Zhang, D, Fushman, D. 登録日 2014-07-14 公開日 2015-02-04 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin. Structure, 23, 2015
2I5O	Solution Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Y-Polymerase Eta 分子名称: DNA polymerase eta, ZINC ION 著者 Zhou, P, Bomar, M.G. 登録日 2006-08-25 公開日 2007-03-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of the ubiquitin-binding zinc finger domain of human DNA Y-polymerase eta. Embo Rep., 8, 2007
8CYM	[2T7+9bp Linker] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle with 9 bp Sticky-End Linker 分子名称: DNA (5'-D(*AP*CP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*C)-3'), DNA (5'-D(*GP*AP*TP*GP*CP*GP*AP*GP*T)-3'), DNA (5'-D(*GP*TP*AP*CP*TP*CP*GP*CP*A)-3'), ... 著者 Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R. 登録日 2022-05-24 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (7.76 Å) 主引用文献 Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles. Angew.Chem.Int.Ed.Engl., 62, 2023
2MRP	NMR solution structure of the Ubiquitin like domain (UBL) of DNA-damage-inducible 1 protein (Ddi1) 分子名称: DNA damage-inducible protein 1 著者 Nowicka, U, Fushman, D, Chen, T. 登録日 2014-07-14 公開日 2015-03-11 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin. Structure, 23, 2015
8CS7	[CCG/CCG] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle 分子名称: DNA (5'-D(*CP*CP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(*CP*CP*GP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), ... 著者 Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R. 登録日 2022-05-12 公開日 2022-12-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (6.67 Å) 主引用文献 Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles. Angew.Chem.Int.Ed.Engl., 62, 2023

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