Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8UHE
DownloadVisualize
BU of 8uhe by Molmil
Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP
分子名称: ApcB2, ApcC, ApcD2, ...
著者Gisriel, C.J, Bryant, D.A, Brudvig, G.W, Shen, G.
登録日2023-10-09
公開日2024-01-03
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献Structure of the antenna complex expressed during far-red light photoacclimation in Synechococcus sp. PCC 7335.
J.Biol.Chem., 300, 2023
8UHD
DownloadVisualize
BU of 8uhd by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF - post-translocated
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ...
著者Su, B.G, Vos, S.M.
登録日2023-10-08
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 2024
8UHB
DownloadVisualize
BU of 8uhb by Molmil
Cryo-EM Structure of the Ro5256390-bound hTA1-Gs heterotrimer signaling complex
分子名称: (2R,4S)-4-[(2S)-2-phenylbutyl]-1,3-oxazolidin-2-amine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Zilberg, G, Warren, A.L, Parpounas, A.K, Wacker, D.
登録日2023-10-08
公開日2024-01-10
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Molecular basis of human trace amine-associated receptor 1 activation.
Nat Commun, 15, 2024
8UHA
DownloadVisualize
BU of 8uha by Molmil
Structure of paused transcription complex Pol II-DSIF-NELF - tilted
分子名称: DNA (28-MER), DNA (38-MER), DNA-directed RNA polymerase II subunit E, ...
著者Vos, S.M, Su, B.G.
登録日2023-10-08
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing.
Mol.Cell, 2024
8UH9
DownloadVisualize
BU of 8uh9 by Molmil
Crystal structure of SARS-CoV-2 main protease E166V mutant in complex with an inhibitor TKB-272
分子名称: (1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER
著者Bulut, H, Hayashi, H, Kuwata, N, Tsuji, K, Das, D, Tamamura, H, Mitsuya, H.
登録日2023-10-07
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2.067 Å)
主引用文献TKB272, an Orally Available SARS-CoV-2-Mpro Inhibitor Containing 5-Fluorobenzothiazole, Potently Blocks SARS-CoV-2 Replication without Ritonavir
To Be Published
8UH8
DownloadVisualize
BU of 8uh8 by Molmil
Crystal structure of SARS-CoV-2 main protease E166V (Apo structure)
分子名称: ORF1a polyprotein
著者Bulut, H, Hayashi, H, Kuwata, N, Tsuji, K, Das, D, Tamamura, H, Mitsuya, H.
登録日2023-10-07
公開日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献TKB272, an Orally Available SARS-CoV-2-Mpro Inhibitor Containing 5-Fluorobenzothiazole, Potently Blocks SARS-CoV-2 Replication without Ritonavir
To Be Published
8UH7
DownloadVisualize
BU of 8uh7 by Molmil
Structure of T4 Bacteriophage clamp loader bound to the T4 clamp, primer-template DNA, and ATP analog
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Primer DNA strand, ...
著者Gee, C.L, Marcus, K, Kelch, B.A, Makino, D.L.
登録日2023-10-07
公開日2023-12-13
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.628 Å)
主引用文献Autoinhibition of a clamp-loader ATPase revealed by deep mutagenesis and cryo-EM.
Nat.Struct.Mol.Biol., 31, 2024
8UH5
DownloadVisualize
BU of 8uh5 by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-272
分子名称: (1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER
著者Bulut, H, Hayashi, H, Kuwata, N, Tsuji, K, Das, D, Tamamura, H, Mitsuya, H.
登録日2023-10-06
公開日2023-12-13
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献TKB272, an Orally Available SARS-CoV-2-Mpro Inhibitor Containing 5-Fluorobenzothiazole, Potently Blocks SARS-CoV-2 Replication without Ritonavir
To Be Published
8UH4
DownloadVisualize
BU of 8uh4 by Molmil
Cryo-EM structure of Maize Streak Virus (MSV) - single head Geminivirus
分子名称: Capsid protein, genomic DNA
著者Bennett, A.B, McKenna, R, Mietzsch, M, Hull, J.A.
登録日2023-10-06
公開日2023-11-22
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献The Two States of MSV Gemini Capsid Assembly
To Be Published
8UH3
DownloadVisualize
BU of 8uh3 by Molmil
Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Setiptiline
分子名称: 5-hydroxytryptamine receptor 1E, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Wacker, D, Parpounas, A.K, Warren, A.L, Zilberg, G.
登録日2023-10-06
公開日2024-05-01
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Structural insights into the unexpected agonism of tetracyclic antidepressants at serotonin receptors 5-HT 1e R and 5-HT 1F R.
Sci Adv, 10, 2024
8UH2
DownloadVisualize
BU of 8uh2 by Molmil
Complex of C3b with the inhibitor albicin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Albicin, Complement C3 beta chain, ...
著者Andersen, J.F, Lei, H, Strayer, E, Ribeiro, J.M.
登録日2023-10-06
公開日2024-05-08
実験手法ELECTRON MICROSCOPY (3.59 Å)
主引用文献The mechanism of a mosquito salivary inhibitor of the alternative C3 convertase is elucidated through structural analysis of its complex with C3bBb
To Be Published
8UH1
DownloadVisualize
BU of 8uh1 by Molmil
Crystal structure of T. brucei EIF4E6 in complex with EIF4G5 peptide
分子名称: Eukaryotic translation initiation factor 4E type 6, MIF4G domain-containing protein
著者Guimaraes, B.G, Penteado, R.F.
登録日2023-10-06
公開日2024-02-28
実験手法X-RAY DIFFRACTION (1.898 Å)
主引用文献Structural analysis of the Trypanosoma brucei EIF4E6/EIF4G5 complex reveals details of the interaction between unusual eIF4F subunits.
Sci Rep, 14, 2024
8UH0
DownloadVisualize
BU of 8uh0 by Molmil
SOS2 co-crystal structure with fragment bound (compound 10)
分子名称: 8-hydroxyquinoline-2-carbonitrile, Son of sevenless homolog 2
著者Gunn, R.J, Lawson, J.D.
登録日2023-10-06
公開日2024-01-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Discovery of Five SOS2 Fragment Hits with Binding Modes Determined by SOS2 X-Ray Cocrystallography.
J.Med.Chem., 67, 2024
8UGZ
DownloadVisualize
BU of 8ugz by Molmil
Crystal structure of Shewanella benthica Group 1 truncated hemoglobin C51S C71S variant
分子名称: CYANIDE ION, Group 1 truncated hemoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Schultz, T.D, Martinez, J.E, Siegler, M.A, Schlessman, J.L, Lecomte, J.T.J.
登録日2023-10-06
公開日2024-04-03
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Heme d formation in a Shewanella benthica hemoglobin.
J.Inorg.Biochem., 259, 2024
8UGY
DownloadVisualize
BU of 8ugy by Molmil
Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Mianserin
分子名称: 5-hydroxytryptamine receptor 1E, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Zilberg, G, Warren, A.L, Wacker, D.
登録日2023-10-06
公開日2024-05-01
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Structural insights into the unexpected agonism of tetracyclic antidepressants at serotonin receptors 5-HT 1e R and 5-HT 1F R.
Sci Adv, 10, 2024
8UGS
DownloadVisualize
BU of 8ugs by Molmil
Cryo-EM structure of bovine phosphodiesterase 6 bound to cGMP
分子名称: CYCLIC GUANOSINE MONOPHOSPHATE, MAGNESIUM ION, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma, ...
著者Aplin, C, Cerione, R.A.
登録日2023-10-06
公開日2024-01-17
最終更新日2024-02-07
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Probing the mechanism by which the retinal G protein transducin activates its biological effector PDE6.
J.Biol.Chem., 300, 2023
8UGR
DownloadVisualize
BU of 8ugr by Molmil
In-situ structure of typeX supercomplex in respiratory chain (composite)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Zheng, W, Zhang, K, Zhu, J.
登録日2023-10-06
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UGQ
DownloadVisualize
BU of 8ugq by Molmil
CryoEM Structure of Maize Streak Virus (MSV) - Geminivirus
分子名称: Capsid protein, DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3')
著者McKenna, R, Bennett, A.B, Mietzsch, M, Hull, J.A.
登録日2023-10-05
公開日2023-11-22
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献The two states of Maize Streak Virus (MSV) Geminivirus Architecture
To Be Published
8UGP
DownloadVisualize
BU of 8ugp by Molmil
In-situ structure of typeA supercomplex in respiratory chain ( local refined map focused on CI iron-sulfur cluster regions )
分子名称: IRON/SULFUR CLUSTER, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, ...
著者Zheng, W, Zhang, K, Zhu, J.
登録日2023-10-05
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UGN
DownloadVisualize
BU of 8ugn by Molmil
In-situ structure of typeO supercomplex in respiratory chain (composite)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Zheng, W, Zhang, K, Zhu, J.
登録日2023-10-05
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UGL
DownloadVisualize
BU of 8ugl by Molmil
High resolution in-situ structure of complex IV in respiratory supercomplex
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Zheng, W, Zhu, J, Zhang, K.
登録日2023-10-05
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UGK
DownloadVisualize
BU of 8ugk by Molmil
High resolution in-situ structure of complex III in respiratory supercomplex (composite)
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
著者Zheng, W, Zhu, J, Zhang, K.
登録日2023-10-05
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.1 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UGJ
DownloadVisualize
BU of 8ugj by Molmil
In-situ structure of typeB supercomplex in respiratory chain (composite)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Zheng, W, Zhang, K, Zhu, J.
登録日2023-10-05
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UGI
DownloadVisualize
BU of 8ugi by Molmil
High resolution in-situ structure of typeA supercomplex in respiratory chain (I1III2IV1,composite)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Zheng, W, Zhang, K, Zhu, J.
登録日2023-10-05
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.1 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024
8UGH
DownloadVisualize
BU of 8ugh by Molmil
In-situ structure of typeA supercomplex with lipids in respiratory chain (composite)
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, ...
著者Zheng, W, Zhang, K, Zhu, J.
登録日2023-10-05
公開日2024-06-19
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.1 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 631, 2024

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon