PDB: 98041 件ウェブページステータス検索Chemie searchBIRD

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8IHT	Rpd3S bound to the nucleosome 分子名称: CALCIUM ION, Chromatin modification-related protein EAF3, DNA (164-MER), ... 著者 Zhang, Y, Gang, C. 登録日 2023-02-23 公開日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.72 Å) 主引用文献 Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme. Cell Res., 33, 2023
8IHM	Eaf3 CHD domain bound to the nucleosome 分子名称: Chromatin modification-related protein EAF3, DNA (164-MER), DNA (165-MER), ... 著者 Zhang, Y, Gang, C. 登録日 2023-02-23 公開日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme. Cell Res., 33, 2023
2UVR	Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... 著者 Irimia, A, Egli, M. 登録日 2007-03-13 公開日 2007-05-08 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4. J.Biol.Chem., 282, 2007
6I0T	Crystal structure of DmTailor in complex with GpU 分子名称: RNA (5'-R(*GP*U)-3'), Terminal uridylyltransferase Tailor 著者 Kroupova, A, Ivascu, A, Jinek, M. 登録日 2018-10-26 公開日 2018-12-05 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Res., 47, 2019
6I0U	Crystal structure of DmTailor in complex with U6 RNA 分子名称: MAGNESIUM ION, RNA (5'-R(*UP*UP*UP*U)-3'), Terminal uridylyltransferase Tailor 著者 Kroupova, A, Ivascu, A, Jinek, M. 登録日 2018-10-26 公開日 2018-12-05 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Res., 47, 2019
6I0V	Crystal structure of DmTailor in complex with CACAGU RNA 分子名称: MAGNESIUM ION, RNA (5'-R(*CP*AP*CP*AP*GP*U)-3'), Terminal uridylyltransferase Tailor 著者 Kroupova, A, Ivascu, A, Jinek, M. 登録日 2018-10-26 公開日 2018-12-05 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.851 Å) 主引用文献 Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Res., 47, 2019
6I0S	Crystal structure of DmTailor in complex with UMPNPP 分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, MAGNESIUM ION, Terminal uridylyltransferase Tailor 著者 Kroupova, A, Ivascu, A, Jinek, M. 登録日 2018-10-26 公開日 2018-12-05 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Res., 47, 2019
5WYN	HtrA2 Pathogenic Mutant 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Serine protease HTRA2, ... 著者 Wagh, A.R, Bose, K. 登録日 2017-01-13 公開日 2018-08-08 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural basis of inactivation of human counterpart of mouse motor neuron degeneration 2 mutant in serine protease HtrA2 Biosci. Rep., 38, 2018
5W8A	The structure of a COA-dependent acyl-homoserine lactone synthase, BjaI, with SAM and isopentyl-CoA 分子名称: Autoinducer synthase, S-ADENOSYLMETHIONINE, isopentyl-Coenzyme A 著者 Dong, S.-H, Nair, S.K. 登録日 2017-06-21 公開日 2017-08-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular basis for the substrate specificity of quorum signal synthases. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WYM	Crystal structure of an anti-connexin26 scFv 分子名称: anti-connexin26 scFv,Ig heavy chain,Linker,anti-connexin26 scFv,Ig light chain 著者 Li, S, Xu, L. 登録日 2017-01-13 公開日 2018-01-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Design and Characterization of a Human Monoclonal Antibody that Modulates Mutant Connexin 26 Hemichannels Implicated in Deafness and Skin Disorders Front Mol Neurosci, 10, 2017
5W8G	The structure of a COA-dependent acyl-homoserine lactone synthase, BjaI, with SAH 分子名称: Autoinducer synthase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION 著者 Dong, S.-H, Nair, S.K. 登録日 2017-06-21 公開日 2017-08-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular basis for the substrate specificity of quorum signal synthases. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WJP	Crystal structure of the cyclohexadienyl dehydratase-like solute-binding protein SAR11_1068 from Candidatus Pelagibacter ubique. 分子名称: Cyclohexadienyl dehydratase 著者 Clifton, B.E, Jackson, C.J. 登録日 2017-07-24 公開日 2017-08-02 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Evolution of cyclohexadienyl dehydratase from an ancestral solute-binding protein. Nat. Chem. Biol., 14, 2018
5W8E	The structure of a CoA-dependent acyl-homoserine lactone synthase, BjaI, with the adduct of SAH and IV-CoA 分子名称: (2S)-4-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}sulfanyl)-2-[(3-methylbutanoyl)amino]butanoic acid, ADENINE, Autoinducer synthase, ... 著者 Dong, S.-H, Nair, S.K. 登録日 2017-06-21 公開日 2017-08-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Molecular basis for the substrate specificity of quorum signal synthases. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6DQW	Flavobacterium johnsoniae class Id ribonucleotide reductase alpha subuint 分子名称: Ribonucleoside-diphosphate reductase, alpha chain 著者 Maggiolo, A.O, Boal, A.K. 登録日 2018-06-11 公開日 2019-04-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures of Class Id Ribonucleotide Reductase Catalytic Subunits Reveal a Minimal Architecture for Deoxynucleotide Biosynthesis. Biochemistry, 58, 2019
8QOI	Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA 分子名称: 18S rRNA (1740-MER), 28S rRNA (3773-MER), 40S ribosomal protein S10, ... 著者 Holvec, S, Barchet, C, Frechin, L, Hazemann, I, von Loeffelholz, O, Klaholz, B.P. 登録日 2023-09-29 公開日 2024-06-12 最終更新日 2024-08-28 実験手法 ELECTRON MICROSCOPY (1.9 Å) 主引用文献 The structure of the human 80S ribosome at 1.9 angstrom resolution reveals the molecular role of chemical modifications and ions in RNA. Nat.Struct.Mol.Biol., 31, 2024
5MBM	Cathepsin B in complex with DARPin 8h6 分子名称: Cathepsin B, DARPin 8h6 著者 Turk, D, Kramer, L, Renko, M, Turk, B. 登録日 2016-11-08 公開日 2017-12-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Cathepsin B in complex with DARPin 8h6 To Be Published
7R97	Crystal structure of postcleavge complex of Escherichia coli RNase III 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... 著者 Dharavath, S, Shaw, G.X, Ji, X. 登録日 2021-06-28 公開日 2022-07-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.804 Å) 主引用文献 Structural basis for Dicer-like function of an engineered RNase III variant and insights into the reaction trajectory of two-Mg 2+ -ion catalysis. Rna Biol., 19, 2022
6DQX	Actinobacillus ureae class Id ribonucleotide reductase alpha subunit 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... 著者 McBride, M.J, Palowitch, G.M, Boal, A.K. 登録日 2018-06-11 公開日 2019-04-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Structures of Class Id Ribonucleotide Reductase Catalytic Subunits Reveal a Minimal Architecture for Deoxynucleotide Biosynthesis. Biochemistry, 58, 2019
5A1W	The structure of the COPI coat linkage II 分子名称: ADP-RIBOSYLATION FACTOR 1, COATOMER SUBUNIT ALPHA, COATOMER SUBUNIT BETA, ... 著者 Dodonova, S.O, Diestelkoetter-Bachert, P, von Appen, A, Hagen, W.J.H, Beck, R, Beck, M, Wieland, F, Briggs, J.A.G. 登録日 2015-05-06 公開日 2015-07-08 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 Vesicular Transport. A Structure of the Copi Coat and the Role of Coat Proteins in Membrane Vesicle Assembly. Science, 349, 2015
6VPB	A novel membrane-bound 6-phosphogluconate dehydrogenase from the acetic acid bacteria Gluconacetobacter diazotrophicus (Gd6PGD) 分子名称: 6-phosphogluconate dehydrogenase, DI(HYDROXYETHYL)ETHER, ISOPROPYL ALCOHOL, ... 著者 Rodriguez-Romero, A, Rodriguez-Hernandez, A. 登録日 2020-02-02 公開日 2020-07-22 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 The structure of a novel membrane-associated 6-phosphogluconate dehydrogenase from Gluconacetobacter diazotrophicus (Gd6PGD) reveals a subfamily of short-chain 6PGDs. Febs J., 288, 2021
8Z50	Crystal structure of the ASF1-H3T-H4 complex 分子名称: Histone H3.1t, Histone H4, Histone chaperone ASF1A 著者 Xu, L. 登録日 2024-04-18 公開日 2024-07-03 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural insights into instability of the nucleosome driven by histone variant H3T. Biochem.Biophys.Res.Commun., 727, 2024
5A1X	The structure of the COPI coat linkage III 分子名称: ADP-RIBOSYLATION FACTOR 1, COATOMER SUBUNIT ALPHA, COATOMER SUBUNIT BETA, ... 著者 Dodonova, S.O, Diestelkoetter-Bachert, P, von Appen, A, Hagen, W.J.H, Beck, R, Beck, M, Wieland, F, Briggs, J.A.G. 登録日 2015-05-06 公開日 2015-07-08 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (23 Å) 主引用文献 Vesicular Transport. A Structure of the Copi Coat and the Role of Coat Proteins in Membrane Vesicle Assembly. Science, 349, 2015
4R67	Human constitutive 20S proteasome in complex with carfilzomib 分子名称: N-{(2S)-2-[(morpholin-4-ylacetyl)amino]-4-phenylbutanoyl}-L-leucyl-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-phenylalaninamide, Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, ... 著者 Sacchettini, J.C, Harshbarger, W.H. 登録日 2014-08-22 公開日 2015-02-11 最終更新日 2015-02-18 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Crystal Structure of the Human 20S Proteasome in Complex with Carfilzomib. Structure, 23, 2015
8I88	Cryo-EM structure of TIR-APAZ/Ago-gRNA complex 分子名称: Piwi domain-containing protein, RNA (5'-R(P*GP*A)-3'), TIR domain-containing protein 著者 Zhang, H, Li, Z, Yu, G.M, Li, X.Z, Wang, X.S. 登録日 2023-02-03 公開日 2023-07-05 最終更新日 2023-09-13 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural insights into mechanisms of Argonaute protein-associated NADase activation in bacterial immunity. Cell Res., 33, 2023
1E4Q	Solution structure of the human defensin hBD-2 分子名称: BETA-DEFENSIN 2 著者 Bauer, F, Schweimer, K, Kluver, E, Adermann, K, Forssmann, W.G, Roesch, P, Sticht, H. 登録日 2000-07-12 公開日 2001-07-12 最終更新日 2011-07-13 実験手法 SOLUTION NMR 主引用文献 Structure Determination of Human and Murine Beta-Defensins Reveals Structural Conservation in the Absence of Significant Sequence Similarity Protein Sci., 10, 2001

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