PDB: 35127 件ウェブページステータス検索Chemie searchBIRD

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2N8Y	Holo form of Calmodulin-Like Domain of Human Non-Muscle alpha-actinin 1 分子名称: Alpha-actinin-1, CALCIUM ION 著者 Drmota Prebil, S, Slapsak, U, de Almeida Ribeiro, E, Pavsic, M, Ilc, G, Zielinska, K, Hartl, M, Backman, L, Plavec, J, Lenarcic, B, Djinovic-Carugo, K. 登録日 2015-10-28 公開日 2016-06-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure and calcium-binding studies of calmodulin-like domain of human non-muscle alpha-actinin-1. Sci Rep, 6, 2016
1H8B	EF-hands 3,4 from alpha-actinin / Z-repeat 7 from titin 分子名称: ALPHA-ACTININ 2, SKELETAL MUSCLE ISOFORM, TITIN 著者 Atkinson, R.A, Joseph, C, Kelly, G, Muskett, F.W, Frenkiel, T.A, Nietlispach, D, Pastore, A. 登録日 2001-02-01 公開日 2001-08-30 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Ca2+-Independent Binding of an EF-Hand Domain to a Novel Motif in the Alpha-Actinin-Titin Complex Nat.Struct.Biol., 8, 2001
7A8U	Crystal structure of sarcomeric protein FATZ-1 (d91-FATZ-1 construct) in complex with rod domain of alpha-actinin-2 分子名称: Alpha-actinin-2, Myozenin-1 著者 Sponga, A, Arolas, J.L, Rodriguez Chamorro, A, Mlynek, G, Hollerl, E, Schreiner, C, Pedron, M, Kostan, J, Ribeiro, E.A, Djinovic-Carugo, K. 登録日 2020-08-31 公開日 2021-06-30 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.802 Å) 主引用文献 Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with alpha-actinin. Sci Adv, 7, 2021
7A8T	Crystal structure of sarcomeric protein FATZ-1 (mini-FATZ-1 construct) in complex with rod domain of alpha-actinin-2 分子名称: Alpha-actinin-2, Myozenin-1 著者 Sponga, A, Arolas, J.L, Rodriguez Chamorro, A, Mlynek, G, Hollerl, E, Schreiner, C, Pedron, M, Kostan, J, Ribeiro, E.A, Djinovic-Carugo, K. 登録日 2020-08-31 公開日 2021-06-30 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with alpha-actinin. Sci Adv, 7, 2021
2NO2	Crystal structure of the DLLRKN-containing coiled-coil domain of Huntingtin-interacting protein 1 分子名称: Huntingtin-interacting protein 1 著者 Ybe, J.A, Mishra, S, Helms, S, Nix, J. 登録日 2006-10-24 公開日 2007-10-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure at 2.8 A of the DLLRKN-containing coiled-coil domain of huntingtin-interacting protein 1 (HIP1) reveals a surface suitable for clathrin light chain binding J.Mol.Biol., 367, 2007
4GK7	yeast 20S proteasome in complex with the Syringolin-Glidobactin chimera 分子名称: Proteasome component C1, Proteasome component C11, Proteasome component C5, ... 著者 Groll, M, Stein, M.L, Bachmann, A. 登録日 2012-08-10 公開日 2012-08-29 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Activity enhancement of the synthetic syrbactin proteasome inhibitor hybrid and biological evaluation in tumor cells. Biochemistry, 51, 2012
7MTL	Crystal structure of colibactin self-resistance protein ClbS in complex with a dsDNA 分子名称: Colibactin self-protection protein ClbS, DNA (5'-D(*AP*AP*TP*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*GP*AP*AP*GP*TP*GP*GP*GP*AP*AP*TP*T)-3') 著者 Tripathi, P, Bruner, S.D. 登録日 2021-05-13 公開日 2021-05-26 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.446 Å) 主引用文献 Structural Basis for the Interactions of the Colibactin Resistance Gene Product ClbS with DNA. Biochemistry, 60, 2021
7XIM	PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES 分子名称: D-XYLOSE ISOMERASE 著者 Janin, J. 登録日 1992-04-03 公開日 1993-07-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites. Biochemistry, 31, 1992
6GI2	Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from Pseudomonas aeruginosa in complex with Tris-catechol vector 分子名称: 1,2-ETHANEDIOL, FE (III) ION, Ferric enterobactin esterase, ... 著者 Moynie, L, Naismith, J.H. 登録日 2018-05-09 公開日 2018-06-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 A Key Role for the Periplasmic PfeE Esterase in Iron Acquisition via the Siderophore Enterobactin in Pseudomonas aeruginosa. ACS Chem. Biol., 13, 2018
6GI5	Crystal structure of the ferric enterobactin esterase (PfeE) from Pseudomonas aeruginosa in complex with the tris-catechol vector 分子名称: FE (III) ION, Ferric enterobactin esterase, ~{N}-[2-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-[[(2~{S})-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-3-(prop-2-ynylamino)propyl]amino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide 著者 Moynie, L, Naismith, J.H. 登録日 2018-05-09 公開日 2018-06-20 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 A Key Role for the Periplasmic PfeE Esterase in Iron Acquisition via the Siderophore Enterobactin in Pseudomonas aeruginosa. ACS Chem. Biol., 13, 2018
6GI0	Crystal structure of the ferric enterobactin esterase (PfeE) from Pseudomonas aeruginosa 分子名称: Ferric enterobactin esterase, NITRATE ION 著者 Moynie, L, Naismith, J.H. 登録日 2018-05-09 公開日 2018-06-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A Key Role for the Periplasmic PfeE Esterase in Iron Acquisition via the Siderophore Enterobactin in Pseudomonas aeruginosa. ACS Chem. Biol., 13, 2018
6BB8	Crystal Structure of Frequency-Interacting RNA helicase (FRH) 分子名称: FRQ-interacting RNA helicase 著者 Morales, Y, Johnson, S.J, Olsen, K.J. 登録日 2017-10-17 公開日 2018-08-29 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.49 Å) 主引用文献 Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance. PLoS ONE, 13, 2018
2WG4	Crystal structure of the complex between human hedgehog-interacting protein HIP and sonic hedgehog without calcium 分子名称: HEDGEHOG-INTERACTING PROTEIN, SODIUM ION, SONIC HEDGEHOG PROTEIN N-PRODUCT, ... 著者 Bishop, B, Aricescu, A.R, Harlos, K, O'Callaghan, C.A, Jones, E.Y, Siebold, C. 登録日 2009-04-15 公開日 2009-06-30 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Structural Insights Into Hedgehog Ligand Sequestration by the Human Hedgehog-Interacting Protein Hip Nat.Struct.Mol.Biol., 16, 2009
9XIM	PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES 分子名称: D-XYLOSE ISOMERASE, D-xylose, MANGANESE (II) ION 著者 Janin, J. 登録日 1992-04-03 公開日 1993-07-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites. Biochemistry, 31, 1992
2CXF	RUN domain of Rap2 interacting protein x, crystallized in C2 space group 分子名称: rap2 interacting protein x 著者 Kukimoto-Niino, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-06-29 公開日 2005-12-29 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (3.07 Å) 主引用文献 Crystal Structure of the RUN Domain of the RAP2-interacting Protein x J.Biol.Chem., 281, 2006
2CXL	RUN domain of Rap2 interacting protein x, crystallized in I422 space group 分子名称: rap2 interacting protein x 著者 Kukimoto-Niino, M, Umehara, T, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-06-30 公開日 2005-12-30 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal Structure of the RUN Domain of the RAP2-interacting Protein x J.Biol.Chem., 281, 2006
1BVZ	ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 分子名称: PROTEIN (ALPHA-AMYLASE II) 著者 Kamitori, S, Kondo, S, Okuyama, K, Yokota, T, Shimura, Y, Tonozuka, T, Sakano, Y. 登録日 1998-09-22 公開日 1999-03-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution. J.Mol.Biol., 287, 1999
1VB9	Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product 分子名称: CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-[alpha-D-glucopyranose-(1-6)]alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-amylase II 著者 Mizuno, M, Tonozuka, T, Uechi, A, Ohtaki, A, Ichikawa, K, Kamitori, S, Nishikawa, A, Sakano, Y. 登録日 2004-02-25 公開日 2005-03-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product EUR.J.BIOCHEM., 271, 2004
1G1Y	CRYSTAL STRUCTURE OF ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 AND BETA-CYCLODEXTRIN COMPLEX 分子名称: ALPHA-AMYLASE II, Cycloheptakis-(1-4)-(alpha-D-glucopyranose) 著者 Kondo, S, Ohtaki, A, Tonozuka, T, Sakano, Y, Kamitori, S. 登録日 2000-10-16 公開日 2001-03-14 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Studies on the hydrolyzing mechanism for cyclodextrins of Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structure of the mutant E354A complexed with beta-cyclodextrin, and kinetic analyses on cyclodextrins. J.Biochem.(Tokyo), 129, 2001
3ZOK	Structure of 3-Dehydroquinate Synthase from Actinidia chinensis in complex with NAD 分子名称: 3-DEHYDROQUINATE SYNTHASE, DI(HYDROXYETHYL)ETHER, GLYCINE, ... 著者 Mittelstaedt, G, Negron, L, Schofield, L.R, Marsh, K, Parker, E.J. 登録日 2013-02-22 公開日 2013-08-21 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Biochemical and structural characterisation of dehydroquinate synthase from the New Zealand kiwifruit Actinidia chinensis. Arch. Biochem. Biophys., 537, 2013
1JIB	Complex of Alpha-amylase II (TVA II) from Thermoactinomyces vulgaris R-47 with Maltotetraose Based on a Crystal Soaked with Maltohexaose. 分子名称: NEOPULLULANASE, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose 著者 Yokota, T, Tonozuka, T, Shimura, Y, Ichikawa, K, Kamitori, S, Sakano, Y. 登録日 2001-07-02 公開日 2001-07-25 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues. Biosci.Biotechnol.Biochem., 65, 2001
1JF5	CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE 2 MUTANT F286A 分子名称: ALPHA AMYLASE II, CALCIUM ION 著者 Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S. 登録日 2001-06-20 公開日 2002-05-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES., 334, 2001
1JI1	Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 分子名称: ALPHA-AMYLASE I, CALCIUM ION 著者 Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y. 登録日 2001-06-28 公開日 2002-06-05 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol., 318, 2002
8PR4	Dynactin pointed end bound to JIP3 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Arp11, C-Jun-amino-terminal kinase-interacting protein 3, ... 著者 Singh, K, Lau, C.K, Manigrasso, G, Gassmann, R, Carter, A.P. 登録日 2023-07-12 公開日 2024-03-27 最終更新日 2024-04-10 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Molecular mechanism of dynein-dynactin complex assembly by LIS1. Science, 383, 2024
1JF6	Crystal structure of thermoactinomyces vulgaris r-47 alpha-amylase mutant F286Y 分子名称: ALPHA AMYLASE II, CALCIUM ION 著者 Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S. 登録日 2001-06-20 公開日 2002-05-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES., 334, 2001

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