PDB: 805 件ウェブページステータス検索Chemie searchBIRD

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6K03	Crystal structure of ceH2A-H2B 分子名称: Histone H2B 1,Histone H2A 著者 Liu, Y.R. 登録日 2019-05-05 公開日 2019-10-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.857 Å) 主引用文献 Crystal structure of xlH2A-H2B Structure, 2019
7COW	353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0 分子名称: CALCIUM ION, CHLORIDE ION, DNA (353-MER), ... 著者 Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. 登録日 2020-08-05 公開日 2021-08-11 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Engineering nucleosomes for generating diverse chromatin assemblies. Nucleic Acids Res., 49, 2021
5XF4	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration) 分子名称: (1S,2S)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
4J8X	X-ray structure of NCP145 with bound chlorido(eta-6-p-cymene)(N-fluorophenyl-2-pyridinecarbothioamide)ruthenium(II) 分子名称: DNA, Histone H2A, Histone H2B 1.1, ... 著者 Adhireksan, Z, Davey, C.A. 登録日 2013-02-15 公開日 2013-05-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Novel metal(II) arene 2-pyridinecarbothioamides: a rationale to orally active organometallic anticancer agents CHEM SCI, 4, 2013
5XM0	The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4 分子名称: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Taguchi, H, Horikoshi, N, Kurumizaka, H. 登録日 2017-05-12 公開日 2018-03-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.874 Å) 主引用文献 Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Nat Commun, 9, 2018
8XBW	The cryo-EM structure of the RAD51 N-terminal lobe domain bound to the histone H4 tail of the nucleosome 分子名称: DNA (5'-D(P*AP*CP*CP*GP*CP*TP*TP*AP*AP*AP*CP*GP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(P*TP*AP*CP*GP*TP*GP*CP*GP*TP*TP*TP*AP*AP*GP*CP*GP*GP*T)-3'), DNA repair protein RAD51 homolog 1, ... 著者 Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-12-07 公開日 2024-03-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site. Nature, 628, 2024
3AZM	Crystal Structure of Human Nucleosome Core Particle Containing H4K79Q mutation 分子名称: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... 著者 Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. 登録日 2011-05-25 公開日 2011-09-21 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3AZJ	Crystal Structure of Human Nucleosome Core Particle Containing H4K44Q mutation 分子名称: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... 著者 Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. 登録日 2011-05-25 公開日 2011-09-21 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
3KUY	DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent 分子名称: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ... 著者 Wu, B, Davey, C.A. 登録日 2009-11-28 公開日 2010-01-05 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent Nucleic Acids Res., 38, 2010
4UUZ	MCM2-histone complex 分子名称: DNA REPLICATION LICENSING FACTOR MCM2, HISTONE H3, HISTONE H4 著者 Richet, N, Liu, D, Legrand, P, Bakail, M, Compper, C, Besle, A, Guerois, R, Ochsenbein, F. 登録日 2014-08-01 公開日 2015-02-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural Insight Into How the Human Helicase Subunit Mcm2 May Act as a Histone Chaperone Together with Asf1 at the Replication Fork. Nucleic Acids Res., 43, 2015
8V7L	Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Histone H2A type 1, Histone H2B, ... 著者 Chio, U.S, Palovcak, E, Armache, J.P, Narlikar, G.J, Cheng, Y. 登録日 2023-12-04 公開日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking. Nat Commun, 15, 2024
7NKX	RNA polymerase II-Spt4/5-nucleosome-Chd1 structure 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromatin elongation factor SPT4, ... 著者 Farnung, L, Ochmann, M, Engeholm, M, Cramer, P. 登録日 2021-02-19 公開日 2021-08-25 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of nucleosome transcription mediated by Chd1 and FACT. Nat.Struct.Mol.Biol., 28, 2021
8KD3	Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
8KD5	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Chang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
7XFC	Structure of nucleosome-DI complex (-30I, Apo state) 分子名称: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-01 公開日 2023-04-19 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
7XFH	Structure of nucleosome-AAG complex (A-30I, post-catalytic state) 分子名称: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-01 公開日 2023-04-19 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
7XFI	Structure of nucleosome-DI complex (-50I, Apo state) 分子名称: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-01 公開日 2023-04-19 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
7XNP	Structure of nucleosome-AAG complex (A-55I, post-catalytic state) 分子名称: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-29 公開日 2023-05-03 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
1P3M	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
8SIY	Origin Recognition Complex Associated (ORCA) protein bound to H4K20me3-nucleosome 分子名称: Histone H2A, Histone H2B, Histone H3.2, ... 著者 Bleichert, F, Ekundayo, B.E. 登録日 2023-04-17 公開日 2023-08-02 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 A dual role for the chromatin reader ORCA/LRWD1 in targeting the origin recognition complex to chromatin. Embo J., 42, 2023
7OHA	nucleosome with TBP and TFIIA bound at SHL +2 分子名称: DNA (122-MER), Histone H2A, Histone H2B 1.1, ... 著者 Wang, H, Cramer, P. 登録日 2021-05-09 公開日 2021-07-28 最終更新日 2021-08-04 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structures and implications of TBP-nucleosome complexes. Proc.Natl.Acad.Sci.USA, 118, 2021
3AYW	Crystal Structure of Human Nucleosome Core Particle Containing H3K56Q mutation 分子名称: 146-MER DNA, CHLORIDE ION, Histone H2A type 1-B/E, ... 著者 Iwasaki, W, Tachiwana, H, Kawaguchi, K, Shibata, T, Kagawa, W, Kurumizaka, H. 登録日 2011-05-19 公開日 2011-09-21 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains Biochemistry, 50, 2011
1ZLA	X-ray Structure of a Kaposi's sarcoma herpesvirus LANA peptide bound to the nucleosomal core 分子名称: Histone H4, Palindromic 146bp Human alpha-Satellite DNA fragment, Xenopus laevis-like histone H2A, ... 著者 Chodaparambil, J.V, Barbera, A.J, Kaye, K.M, Luger, K. 登録日 2005-05-05 公開日 2006-02-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA. Science, 311, 2006
3MVD	Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Makde, R.D, England, J.R, Yennawar, H.P, Tan, S. 登録日 2010-05-04 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of RCC1 chromatin factor bound to the nucleosome core particle. Nature, 467, 2010
1P3K	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004

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