Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7ZZP
DownloadVisualize
BU of 7zzp by Molmil
Structure of HDAC2 complexed with an inhibitory ligand
分子名称: (2S)-2-HYDROXYPROPANOIC ACID, 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-25
公開日2022-09-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
2ZWA
DownloadVisualize
BU of 2zwa by Molmil
Crystal structure of tRNA wybutosine synthesizing enzyme TYW4
分子名称: 1,2-ETHANEDIOL, CITRIC ACID, Leucine carboxyl methyltransferase 2, ...
著者Suzuki, Y, Noma, A, Suzuki, T, Ishitani, R, Nureki, O.
登録日2008-12-01
公開日2009-06-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
7ZZS
DownloadVisualize
BU of 7zzs by Molmil
HDAC2 complexed with an inhibitory ligand
分子名称: (5~{S})-5-(4-chlorophenyl)pyrrolidin-2-one, 1,2-ETHANEDIOL, 2-(cyclohexylazaniumyl)ethanesulfonate, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-26
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
5C26
DownloadVisualize
BU of 5c26 by Molmil
Crystal structure of SYK in complex with compound 1
分子名称: 3-{8-[(3,4-dimethoxyphenyl)amino]imidazo[1,2-a]pyrazin-6-yl}benzamide, GLU-VAL-PTR-GLU-SER-PRO, Tyrosine-protein kinase SYK
著者Han, S, Chang, J.
登録日2015-06-15
公開日2015-10-07
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Imidazotriazines: Spleen Tyrosine Kinase (Syk) Inhibitors Identified by Free-Energy Perturbation (FEP).
Chemmedchem, 11, 2016
6JZY
DownloadVisualize
BU of 6jzy by Molmil
Crystal structure of AAR with NADPH and stearyl in complex with ADO binding a long chain carbohydrate
分子名称: Aldehyde decarbonylase, FE (II) ION, HEXADECAN-1-OL, ...
著者Zhang, H.M, Li, M, Gao, Y.
登録日2019-05-04
公開日2020-04-01
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural insights into catalytic mechanism and product delivery of cyanobacterial acyl-acyl carrier protein reductase.
Nat Commun, 11, 2020
6DJ3
DownloadVisualize
BU of 6dj3 by Molmil
Crystal structure of CNNM2 cyclic nucleotide-binding homology domain
分子名称: 1,2-ETHANEDIOL, Metal transporter CNNM2
著者Chen, Y.S, Gehring, K.
登録日2018-05-24
公開日2018-10-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+efflux activity.
J. Biol. Chem., 293, 2018
6DPC
DownloadVisualize
BU of 6dpc by Molmil
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 12 mM Mn2+ and 200 mM K+ for 40 s at 21 C
分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ...
著者Samara, N.L, Yang, W.
登録日2018-06-09
公開日2018-08-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol., 25, 2018
6A9J
DownloadVisualize
BU of 6a9j by Molmil
Crystal structure of the PE-bound N-terminal domain of Atg2
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Endolysin,Autophagy-related protein 2
著者Osawa, T, Noda, N.N.
登録日2018-07-13
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
5ZVR
DownloadVisualize
BU of 5zvr by Molmil
Crystal structure of R274A mutant of phosphomannose isomerase from Salmonella typhimurium
分子名称: 1,2-ETHANEDIOL, Mannose-6-phosphate isomerase, ZINC ION
著者Bangera, M, Murthy, M.R.N.
登録日2018-05-12
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structural and functional insights into phosphomannose isomerase: the role of zinc and catalytic residues.
Acta Crystallogr D Struct Biol, 75, 2019
3KWR
DownloadVisualize
BU of 3kwr by Molmil
Crystal structure of Putative RNA-binding protein (NP_785364.1) from LACTOBACILLUS PLANTARUM at 1.45 A resolution
分子名称: GLYCEROL, Putative RNA-binding protein, SULFATE ION
著者Joint Center for Structural Genomics (JCSG)
登録日2009-12-01
公開日2009-12-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of Putative RNA-binding protein (NP_785364.1) from Lactobacillus plantarum at 1.45 A resolution
To be published
3KZX
DownloadVisualize
BU of 3kzx by Molmil
Crystal structure of a Had-superfamily hydrolase from Ehrlichia chaffeensis at 1.9A resolution
分子名称: HAD-superfamily hydrolase, subfamily IA, variant 1, ...
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2009-12-08
公開日2009-12-22
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of a Had-superfamily hydrolase from Ehrlichia chaffeensis at 1.9A resolution
To be Published
6MCK
DownloadVisualize
BU of 6mck by Molmil
p97 D1D2 with CB5083 bound
分子名称: 1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide, Transitional endoplasmic reticulum ATPase
著者Xia, D, Tang, W.K.
登録日2018-08-31
公開日2019-01-23
最終更新日2025-06-11
実験手法X-RAY DIFFRACTION (3.77 Å)
主引用文献Structural Basis of p97 Inhibition by the Site-Selective Anticancer Compound CB-5083.
Mol. Pharmacol., 95, 2019
6A1D
DownloadVisualize
BU of 6a1d by Molmil
Crystal structure of a synthase 1 from Santalum album in complex with ligand
分子名称: MAGNESIUM ION, SULFATE ION, Sesquisabinene B synthase 1, ...
著者Han, X, Ko, T.P, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2018-06-07
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Crystal structure of a synthase 1 from Santalum album in complex with ligand
To Be Published
5FUB
DownloadVisualize
BU of 5fub by Molmil
Crystal Structure of zebrafish Protein Arginine Methyltransferase 2 catalytic domain with SAH
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
著者Cura, V, Troffer-Charlier, N, Marechal, N, Bonnefond, L, Cavarelli, J.
登録日2016-01-22
公開日2016-11-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.997 Å)
主引用文献Structural studies of protein arginine methyltransferase 2 reveal its interactions with potential substrates and inhibitors.
FEBS J., 284, 2017
6AGT
DownloadVisualize
BU of 6agt by Molmil
Crystal structure of PfKRS complexed with chromone inhibitor
分子名称: COBALT (II) ION, FORMIC ACID, LYSINE, ...
著者Yogavel, M, Sharma, A, Sharma, A, Baragana, B, Walpole, C.
登録日2018-08-14
公開日2019-03-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.953 Å)
主引用文献Lysyl-tRNA synthetase as a drug target in malaria and cryptosporidiosis.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6AIE
DownloadVisualize
BU of 6aie by Molmil
Crystal structure of a new form of RsmD-like RNA methyl transferase from Mycobacterium tuberculosis determined at 1.74 A resolution
分子名称: Putative methyltransferase
著者Venkataraman, S, Dhankar, A, Sinha, K.M, Manivasakan, P, Iqbal, N, Singh, T.P, Prasad, B.V.L.S.
登録日2018-08-22
公開日2018-09-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Crystal structure of a new form of RsmD-like RNA methyl transferase from Mycobacterium tuberculosis determined at 1.74 A resolution
To Be Published
3ZH5
DownloadVisualize
BU of 3zh5 by Molmil
The structure of Haemophilus influenzae protein E
分子名称: 1,2-ETHANEDIOL, GLYCEROL, PROTEIN E
著者Singh, B, Al-Jubair, T, Riesbeck, K, Thunnissen, M.M.G.M.
登録日2012-12-20
公開日2013-03-20
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献The Unique Structure of Haemophilus Influenzae Protein E Reveals Multiple Binding Sites for Host Factors.
Infect.Immun., 81, 2013
2YK7
DownloadVisualize
BU of 2yk7 by Molmil
Structure of Neisseria LOS-specific sialyltransferase (NST), in complex with CMP-3F-Neu5Ac.
分子名称: 1,2-ETHANEDIOL, CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE, CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID, ...
著者Lin, L.Y.C, Rakic, B, Chiu, C.P.C, Lameignere, E, Wakarchuk, W.W, Withers, S.G, Strynadka, N.C.J.
登録日2011-05-25
公開日2011-08-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structure and Mechanism of the Lipooligosaccharide Sialyltransferase from Neisseria Meningitidis
J.Biol.Chem., 286, 2011
1BN0
DownloadVisualize
BU of 1bn0 by Molmil
SL3 HAIRPIN FROM THE PACKAGING SIGNAL OF HIV-1, NMR, 11 STRUCTURES
分子名称: SL3 RNA HAIRPIN
著者Pappalardo, L, Kerwood, D.J, Pelczer, I, Borer, P.N.
登録日1998-07-31
公開日1999-04-27
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional folding of an RNA hairpin required for packaging HIV-1.
J.Mol.Biol., 282, 1998
1D37
DownloadVisualize
BU of 1d37 by Molmil
INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING OF ANTHRACYCLINE DRUGS TO DNA: THE MOLECULAR STRUCTURE OF IDARUBICIN AND 4-O-DEMETHYL-11-DEOXYDOXORUBICIN COMPLEXED TO D(CGATCG)
分子名称: 1-O-DEMETHYL-6-DEOXYDOXORUBICIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
著者Gao, Y.-G, Wang, A.H.-J.
登録日1991-04-23
公開日1992-04-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Influence of aglycone modifications on the binding of anthracycline drugs to DNA: the molecular structure of idarubicin and 4-O-demethyl-11-deoxydoxorubicin complexed to d(CGATCG).
Anti-Cancer Drug Des., 6, 1991
1KFO
DownloadVisualize
BU of 1kfo by Molmil
CRYSTAL STRUCTURE OF AN RNA HELIX RECOGNIZED BY A ZINC-FINGER PROTEIN: AN 18 BASE PAIR DUPLEX AT 1.6 RESOLUTION
分子名称: 5'-R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP*AP*(5BU)P*CP*CP*C)-3'
著者Lima, S, Hildenbrand, J, Korostelev, A, Hattman, S, Li, H.
登録日2001-11-21
公開日2001-12-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of an RNA helix recognized by a zinc-finger protein: an 18-bp duplex at 1.6 A resolution.
RNA, 8, 2002
5T6W
DownloadVisualize
BU of 5t6w by Molmil
HLA-B*57:01 presenting SSTRGISQLW
分子名称: Beta-2-microglobulin, Decapeptide: SER-SER-THR-ARG-GLY-ILE-SER-GLN-LEU-TRP, GLYCEROL, ...
著者Pymm, P, Rossjohn, J, Vivian, J.P.
登録日2016-09-01
公開日2017-03-01
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献MHC-I peptides get out of the groove and enable a novel mechanism of HIV-1 escape.
Nat. Struct. Mol. Biol., 24, 2017
2Z6B
DownloadVisualize
BU of 2z6b by Molmil
Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin
分子名称: 1-ETHYL-PYRROLIDINE-2,5-DIONE, Baseplate structural protein Gp27, Tail-associated lysozyme
著者Koshiyama, T, Yokoi, N, Ueno, T, Kanamaru, S, Nagano, S, Shiro, Y, Arisaka, F, Watanabe, Y.
登録日2007-07-28
公開日2008-04-15
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Molecular design of heteroprotein assemblies providing a bionanocup as a chemical reactor.
Small, 4, 2008
7AT9
DownloadVisualize
BU of 7at9 by Molmil
Structure of protein kinase ck2 catalytic subunit (csnk2a2 gene product) in complex with the ATP-competitive inhibitor MB002 and the alphaD-pocket ligand 3,4-dichlorophenethylamine
分子名称: 1,2-ETHANEDIOL, 2-(3,4-dichlorophenyl)ethanamine, 3-(4,5,6,7-tetrabromo-1H-benzotriazol-1-yl)propan-1-ol, ...
著者Lindenblatt, D, Applegate, V, Nickelsen, A, Klussmann, M, Neundorf, I, Goetz, C, Jose, J, Niefind, K.
登録日2020-10-29
公開日2021-08-04
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Molecular Plasticity of Crystalline CK2 alpha ' Leads to KN2, a Bivalent Inhibitor of Protein Kinase CK2 with Extraordinary Selectivity.
J.Med.Chem., 65, 2022
4YVK
DownloadVisualize
BU of 4yvk by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C)
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.002 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015

242842

件を2025-10-08に公開中

PDB statisticsPDBj update infoContact PDBjnumon