PDB: 607 件ウェブページステータス検索Chemie searchBIRD

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5ZRO	M. smegmatis antimutator protein MutT2 in complex with 5mdCTP 分子名称: 1,2-ETHANEDIOL, 2'-DEOXY-5-METHYLCYTIDINE 5'-(TETRAHYDROGEN TRIPHOSPHATE), Putative mutator protein MutT2/NUDIX hydrolase 著者 Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M. 登録日 2018-04-24 公開日 2019-04-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2. J.Struct.Biol., 204, 2018
2YYH	Crystal structure of Nudix family protein from Aquifex aeolicus 分子名称: 8-OXO-dGTPase domain 著者 Nakagawa, N, Kishishita, S, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-30 公開日 2007-11-06 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of Nudix family protein from Aquifex aeolicus To be Published
2YVN	Crystal structure of NDX2 from thermus thermophilus HB8 分子名称: MutT/nudix family protein 著者 Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-13 公開日 2008-02-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
2YVP	Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8 分子名称: MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, MutT/nudix family protein 著者 Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-13 公開日 2008-02-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
2YVM	Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8 分子名称: MAGNESIUM ION, MutT/nudix family protein 著者 Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-04-13 公開日 2008-02-26 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
8I1G	Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 9.1 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1H	Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 9.7 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I18	Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 7.7 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1D	Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 7.7 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1C	Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 9.1 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1A	Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 8.6 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1J	Crystal structure of human MTH1(G2K/D120N mutant) in complex with 2-oxo-dATP at pH 9.7 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2023-07-26 実験手法 X-RAY DIFFRACTION (1.08 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I19	Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 8.0 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1I	Crystal structure of human MTH1(G2K/D120N mutant) in complex with 2-oxo-dATP at pH 7.7 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1E	Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 8.0 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I8T	Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dAMP and Mn2+ 分子名称: 2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE, 7,8-dihydro-8-oxoguanine triphosphatase, MANGANESE (II) ION 著者 Nakamura, T, Yamagata, Y. 登録日 2023-02-05 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I8S	Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGMP and Mn2+ 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION 著者 Nakamura, T, Yamagata, Y. 登録日 2023-02-05 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
8I1F	Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 8.6 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate 著者 Nakamura, T, Yamagata, Y. 登録日 2023-01-13 公開日 2023-03-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
7X9L	Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 4 hr using 10 mM Mn2+ 分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2022-03-15 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA, 119, 2022
7WWA	Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 2.5 hr in 20 mM Mn2+ 分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2022-02-12 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA, 119, 2022
7WW9	Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 1.5 hr in 20 mM Mn2+ 分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2022-02-12 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA, 119, 2022
7X9I	Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 12 hr using 5 mM Mn2+ 分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2022-03-15 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA, 119, 2022
7X9J	Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 24 hr using 5 mM Mn2+ 分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2022-03-15 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA, 119, 2022
7WW7	Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 1 hr in 5 mM Mn2+ 分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2022-02-12 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA, 119, 2022
7WW5	Crystal structure of MutT-8-oxo-dGTP complex 分子名称: 7,8-dihydro-8-oxoguanine-triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2022-02-12 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA, 119, 2022

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