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PDB: 382 件
7DUK
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BU of 7duk by Molmil
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound
分子名称: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, 30S Ribosomal RNA rRNA, 30S ribosomal protein S10, ...
著者DeMirci, H, Destan, E.
登録日2021-01-09
公開日2022-01-12
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound
to be published
7V2N
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BU of 7v2n by Molmil
T.thermophilus 30S ribosome with KsgA, class K2
分子名称: 16s ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Raina, R, Singh, J, Anand, R, Vinothkumar, K.R.
登録日2021-08-09
公開日2022-04-06
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases.
Acs Chem.Biol., 17, 2022
4LFC
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BU of 4lfc by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
分子名称: 16S rRNA, MAGNESIUM ION, POTASSIUM ION, ...
著者Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T.
登録日2013-06-26
公開日2014-07-02
実験手法X-RAY DIFFRACTION (3.602 Å)
主引用文献
to be published, 2013
7DUI
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BU of 7dui by Molmil
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound
分子名称: 30S Ribosomal RNA rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者DeMirci, H, Destan, E.
登録日2021-01-09
公開日2022-01-12
実験手法X-RAY DIFFRACTION (3.62 Å)
主引用文献Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound
to be published
7DUL
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BU of 7dul by Molmil
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound
分子名称: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, 30S Ribosomal RNA rRNA, 30S ribosomal protein S10, ...
著者DeMirci, H, Destan, E.
登録日2021-01-09
公開日2022-01-26
実験手法X-RAY DIFFRACTION (3.62 Å)
主引用文献Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound
To Be Published
5D8B
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BU of 5d8b by Molmil
Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Korostelev, A.A.
登録日2015-08-17
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.63 Å)
主引用文献Ribosome Structure Reveals Preservation of Active Sites in the Presence of a P-Site Wobble Mismatch.
Structure, 23, 2015
6NDK
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BU of 6ndk by Molmil
Structure of ASLSufA6 A37.5 bound to the 70S A site
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Nguyen, H.T, Hoffer, E.D, Dunham, C.M.
登録日2018-12-13
公開日2019-02-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.64 Å)
主引用文献Importance of a tRNA anticodon loop modification and a conserved, noncanonical anticodon stem pairing intRNACGGProfor decoding
J. Biol. Chem., 294, 2019
4JI2
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BU of 4ji2 by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
分子名称: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ...
著者Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T.
登録日2013-03-05
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.64 Å)
主引用文献The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
8FON
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BU of 8fon by Molmil
Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Nguyen, H.A, Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
登録日2023-01-02
公開日2023-03-29
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3.64 Å)
主引用文献Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches.
J.Biol.Chem., 299, 2023
4DV2
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BU of 4dv2 by Molmil
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
分子名称: 16S rRNA, MAGNESIUM ION, ZINC ION, ...
著者Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G.
登録日2012-02-22
公開日2013-02-27
実験手法X-RAY DIFFRACTION (3.646 Å)
主引用文献A structural basis for streptomycin resistance
To be Published
4LFA
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BU of 4lfa by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
分子名称: 16S rRNA, HYGROMYCIN B, MAGNESIUM ION, ...
著者Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T.
登録日2013-06-26
公開日2014-07-02
実験手法X-RAY DIFFRACTION (3.6461 Å)
主引用文献Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
to be published, 2013
4NXM
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BU of 4nxm by Molmil
Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)
分子名称: 16S rRNA, MAGNESIUM ION, ZINC ION, ...
著者Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G.
登録日2013-12-09
公開日2014-05-21
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献A structural basis for streptomycin resistance
To be Published
1N36
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BU of 1n36 by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V.
登録日2002-10-25
公開日2002-11-29
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
Cell(Cambridge,Mass.), 111, 2002
4DV4
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BU of 4dv4 by Molmil
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G
分子名称: 16S rRNA, MAGNESIUM ION, ZINC ION, ...
著者Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G.
登録日2012-02-22
公開日2013-02-27
実験手法X-RAY DIFFRACTION (3.651 Å)
主引用文献A structural basis for streptomycin resistance
To be Published
4DUZ
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BU of 4duz by Molmil
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin
分子名称: 16S rRNA, MAGNESIUM ION, STREPTOMYCIN, ...
著者Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G.
登録日2012-02-22
公開日2013-02-27
実験手法X-RAY DIFFRACTION (3.651 Å)
主引用文献A structural basis for streptomycin resistance
To be Published
4P70
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BU of 4p70 by Molmil
Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2014-03-25
公開日2014-08-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.68 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
6BZ7
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BU of 6bz7 by Molmil
Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
登録日2017-12-22
公開日2018-11-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.68 Å)
主引用文献Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res., 47, 2019
4DV5
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BU of 4dv5 by Molmil
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin
分子名称: 16S rRNA, MAGNESIUM ION, STREPTOMYCIN, ...
著者Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G.
登録日2012-02-22
公開日2013-02-27
実験手法X-RAY DIFFRACTION (3.683 Å)
主引用文献A structural basis for streptomycin resistance
To be Published
3OTO
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BU of 3oto by Molmil
Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
分子名称: 16S rRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Demirci, H, Murphy IV, F, Belardinelli, R, Kelley, A.C, Ramakrishnan, V, Gregory, S.T, Dahlberg, A.E, Jogl, G.
登録日2010-09-13
公開日2010-09-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.69 Å)
主引用文献Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function.
Rna, 16, 2010
4JI4
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BU of 4ji4 by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
分子名称: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ...
著者Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T.
登録日2013-03-05
公開日2013-11-06
最終更新日2013-12-04
実験手法X-RAY DIFFRACTION (3.692 Å)
主引用文献The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4V8U
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BU of 4v8u by Molmil
Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.
分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
著者Gao, Y.G, Feng, S, Chen, Y.
登録日2012-08-28
公開日2014-07-09
最終更新日2019-10-30
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Crystal structure of 70S ribosome with both cognate tRNAs in the E and P sites representing an authentic elongation complex.
PLoS ONE, 8, 2013
6N9F
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BU of 6n9f by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S19, ...
著者Melnikov, S.V, Khabibullina, N.F, Mairhofer, E, Vargas-Rodriguez, O, Reynolds, N.M, Micura, R, Soll, D, Polikanov, Y.S.
登録日2018-12-03
公開日2018-12-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res., 47, 2019
6N9E
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BU of 6n9e by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S19, ...
著者Melnikov, S.V, Khabibullina, N.F, Mairhofer, E, Vargas-Rodriguez, O, Reynolds, N.M, Micura, R, Soll, D, Polikanov, Y.S.
登録日2018-12-03
公開日2018-12-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res., 47, 2019
6Q95
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BU of 6q95 by Molmil
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ...
著者Rae, C.D.
登録日2018-12-17
公開日2019-02-27
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献How a circularized tmRNA moves through the ribosome.
Science, 363, 2019
4V4I
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BU of 4v4i by Molmil
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
分子名称: 16S SMALL SUBUNIT RIBOSOMAL RNA, 23S LARGE SUBUNIT RIBOSOMAL RNA, 30S ribosomal protein S10, ...
著者Korostelev, A, Trakhanov, S, Laurberg, M, Noller, H.F.
登録日2007-02-15
公開日2014-07-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.71 Å)
主引用文献Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements
Cell(Cambridge,Mass.), 126, 2006

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