Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 125 件
7EVP
DownloadVisualize
BU of 7evp by Molmil
Cryo-EM structure of the Gp168-beta-clamp complex
分子名称: Beta sliding clamp, Sliding clamp inhibitor
著者Liu, B, Li, S, Liu, Y, Chen, H, Hu, Z, Wang, Z, Gou, L, Zhang, L, Ma, B, Wang, H, Matthews, S, Wang, Y, Zhang, K.
登録日2021-05-21
公開日2022-02-16
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Bacteriophage Twort protein Gp168 is a beta-clamp inhibitor by occupying the DNA sliding channel.
Nucleic Acids Res., 49, 2021
7AZ5
DownloadVisualize
BU of 7az5 by Molmil
DNA polymerase sliding clamp from Escherichia coli with peptide 47 bound
分子名称: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, Peptide 47, ...
著者Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y.
登録日2020-11-16
公開日2021-12-01
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp.
J.Med.Chem., 64, 2021
3T0P
DownloadVisualize
BU of 3t0p by Molmil
Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2011-07-20
公開日2011-08-10
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution
To be published
5M1S
DownloadVisualize
BU of 5m1s by Molmil
Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode
分子名称: DNA Primer Strand, DNA Template Strand, DNA polymerase III subunit alpha, ...
著者Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H.
登録日2016-10-10
公開日2017-01-18
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Self-correcting mismatches during high-fidelity DNA replication.
Nat. Struct. Mol. Biol., 24, 2017
7RZM
DownloadVisualize
BU of 7rzm by Molmil
Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a
分子名称: DNA polymerase III subunit beta
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2021-08-27
公開日2021-10-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a
To Be Published
7YBD
DownloadVisualize
BU of 7ybd by Molmil
Crystal structure of sliding DNA clamp of Clostridioides difficile
分子名称: Beta sliding clamp, TRIETHYLENE GLYCOL
著者Hishiki, A, Okazaki, S, Hara, K, Hashimoto, H.
登録日2022-06-29
公開日2022-10-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile.
J.Biochem., 173, 2022
3F1V
DownloadVisualize
BU of 3f1v by Molmil
E. coli Beta Sliding Clamp, 148-153 Ala Mutant
分子名称: CALCIUM ION, CHLORIDE ION, DNA polymerase III subunit beta
著者Cody, V.
登録日2008-10-28
公開日2009-09-01
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Sliding clamp-DNA interactions are required for viability and contribute to DNA polymerase management in Escherichia coli.
J.Mol.Biol., 387, 2009
2POL
DownloadVisualize
BU of 2pol by Molmil
THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP
分子名称: DNA POLYMERASE III (BETA SUBUNIT)
著者Kong, X.-P, Kuriyan, J.
登録日1992-11-13
公開日1994-01-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp.
Cell(Cambridge,Mass.), 69, 1992
6FVM
DownloadVisualize
BU of 6fvm by Molmil
Mutant DNA polymerase sliding clamp from Escherichia coli with bound P7 peptide
分子名称: Beta sliding clamp, CALCIUM ION, GLYCEROL, ...
著者Martiel, I, Andre, C, Olieric, V, Guichard, G, Burnouf, D.
登録日2018-03-04
公開日2019-04-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.631 Å)
主引用文献Peptide Interactions on Bacterial Sliding Clamps.
Acs Infect Dis., 2019
8PAY
DownloadVisualize
BU of 8pay by Molmil
Structure of the E.coli DNA polymerase sliding clamp with a covalently bound peptide 2.
分子名称: ACE-GLN-ALC-GLC-LEU-PHE, Beta sliding clamp, GLYCEROL, ...
著者Compain, G, Monsarrat, C, Blagojevic, J, Brillet, K, Dumas, P, Hammann, P, Kuhn, L, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Burnouf, D, wagner, J, Guichard, G.
登録日2023-06-08
公開日2024-03-13
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp.
Jacs Au, 4, 2024
8PAT
DownloadVisualize
BU of 8pat by Molmil
Structure of the E.coli DNA polymerase sliding clamp with a covalently bound peptide 3.
分子名称: ACE-GLN-ALC-GLX-LEU-PHE, Beta sliding clamp
著者Compain, G, Monsarrat, C, Blagojevic, J, Brillet, K, Dumas, P, Hammann, P, Kuhn, L, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Burnouf, D, Guichard, G.
登録日2023-06-08
公開日2024-03-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp.
Jacs Au, 4, 2024
6FVN
DownloadVisualize
BU of 6fvn by Molmil
DNA polymerase sliding clamp from Mycobacterium tuberculosis with bound P7 peptide
分子名称: Beta sliding clamp, P7 peptide
著者Martiel, I, Andre, C, Olieric, V, Guichard, G, Burnouf, D.
登録日2018-03-04
公開日2019-04-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.142 Å)
主引用文献Peptide Interactions on Bacterial Sliding Clamps.
Acs Infect Dis., 2019
6FVO
DownloadVisualize
BU of 6fvo by Molmil
Mutant DNA polymerase sliding clamp from Mycobacterium tuberculosis with bound P7 peptide
分子名称: Beta sliding clamp, CALCIUM ION, P7 peptide
著者Martiel, I, Andre, C, Olieric, V, Guichard, G, Burnouf, D.
登録日2018-03-04
公開日2019-04-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.689 Å)
主引用文献Peptide Interactions on Bacterial Sliding Clamps.
Acs Infect Dis., 2019
6FVL
DownloadVisualize
BU of 6fvl by Molmil
DNA polymerase sliding clamp from Escherichia coli with bound P7 peptide
分子名称: Beta sliding clamp, GLYCEROL, P7 peptide, ...
著者Martiel, I, Andre, C, Olieric, V, Guichard, G, Burnouf, D.
登録日2018-03-04
公開日2019-04-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.975 Å)
主引用文献Peptide Interactions on Bacterial Sliding Clamps.
Acs Infect Dis., 2019
1VPK
DownloadVisualize
BU of 1vpk by Molmil
Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution
分子名称: DNA polymerase III, beta subunit
著者Joint Center for Structural Genomics (JCSG)
登録日2004-11-09
公開日2004-11-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution
To be published
1JQJ
DownloadVisualize
BU of 1jqj by Molmil
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex
分子名称: DNA polymerase III, beta chain, delta subunit
著者Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
登録日2001-08-07
公開日2001-11-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
2XUR
DownloadVisualize
BU of 2xur by Molmil
The G157C mutation in the Escherichia coli sliding clamp specifically affects initiation of replication
分子名称: DNA POLYMERASE III SUBUNIT BETA
著者Johnsen, L, Morigen, Dalhus, B, Bjoras, M, Flaatten, I, Waldminghaus, T, Skarstad, K.
登録日2010-10-20
公開日2011-02-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The G157C Mutation in the Escherichia Coli Sliding Clamp Specifically Affects Initiation of Replication.
Mol.Microbiol., 79, 2011
1JQL
DownloadVisualize
BU of 1jql by Molmil
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140)
分子名称: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT
著者Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
登録日2001-08-07
公開日2001-09-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
1UNN
DownloadVisualize
BU of 1unn by Molmil
Complex of beta-clamp processivity factor and little finger domain of PolIV
分子名称: DNA POLYMERASE III BETA SUBUNIT, DNA POLYMERASE IV, SULFATE ION
著者Bunting, K.A, Roe, S.M, Pearl, L.H.
登録日2003-09-11
公開日2003-11-06
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis for Recruitment of Translesion DNA Polymerase Pol Iv/Dinb to the Beta-Clamp
Embo J., 22, 2003
1MMI
DownloadVisualize
BU of 1mmi by Molmil
E. COLI DNA POLYMERASE BETA SUBUNIT
分子名称: DNA polymerase III, beta chain
著者Oakley, A.J, Prosselkov, P, Wijffels, G, Beck, J.L, Wilce, M.C.J, Dixon, N.E.
登録日2002-09-04
公開日2003-09-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.848 Å)
主引用文献Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III.
Acta Crystallogr.,Sect.D, 59, 2003
2AVT
DownloadVisualize
BU of 2avt by Molmil
Crystal structure of the beta subunit from DNA polymerase of Streptococcus pyogenes
分子名称: DNA polymerase III beta subunit
著者Argiriadi, M.A, Goedken, E.R, Bruck, I, O'donnell, M, Kuriyan, J.
登録日2005-08-30
公開日2006-01-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium.
Bmc Struct.Biol., 6, 2006
2AWA
DownloadVisualize
BU of 2awa by Molmil
Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution
分子名称: DNA polymerase III, beta chain, GLYCEROL
著者Joint Center for Structural Genomics (JCSG)
登録日2005-08-31
公開日2005-09-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of DNA polymerase III, beta chain (EC 2.7.7.7) (np_344555.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 2.50 A resolution
To be published
5FKU
DownloadVisualize
BU of 5fku by Molmil
cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex)
分子名称: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ...
著者Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H.
登録日2015-10-20
公開日2015-11-25
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (8.34 Å)
主引用文献cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau.
Elife, 4, 2015
5FRQ
DownloadVisualize
BU of 5frq by Molmil
Crystal Structure of Helicobacter pylori beta clamp bound to DNA ligase peptide
分子名称: DNA LIGASE, DNA POLYMERASE III SUBUNIT BETA
著者Pandey, P, Gourinath, S.
登録日2015-12-21
公開日2016-08-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural Insight Into Beta-Clamp and its Interaction with DNA Ligase in Helicobacter Pylori
Sci.Rep., 6, 2016
1OK7
DownloadVisualize
BU of 1ok7 by Molmil
A Conserved protein binding-site on Bacterial Sliding Clamps
分子名称: DNA POLYMERASE III, DNA POLYMERASE IV
著者Burnouf, D.Y, Olieric, V, Wagner, J, Fujii, S, Reinbolt, J, Fuchs, R.P.P, Dumas, P.
登録日2003-07-18
公開日2004-07-15
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural and Biochemical Analysis of Sliding Clamp/Ligand Interactions Suggest a Competition between Replicative and Translesion DNA Polymerases
J.Mol.Biol., 335, 2004

223532

件を2024-08-07に公開中

PDB statisticsPDBj update infoContact PDBjnumon