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PDB: 122 件

3GV8
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BU of 3gv8 by Molmil
Human DNA polymerase iota in complex with T template DNA and incoming dGTP
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*C)-3', 5'-D(*AP*TP*GP*GP*GP*TP*CP*CP*T)-3', ...
著者Kirouac, K.N, Ling, H.
登録日2009-03-30
公開日2009-06-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota
Embo J., 28, 2009
3GV5
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BU of 3gv5 by Molmil
Human DNA polymerase iota in complex with T template DNA and incoming ddADP
分子名称: 2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE, 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', ...
著者Kirouac, K.N, Ling, H.
登録日2009-03-30
公開日2009-06-02
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota
Embo J., 28, 2009
3V3X
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BU of 3v3x by Molmil
Nitroxide Spin Labels in Protein GB1: N8/K28 Double Mutant
分子名称: ACETATE ION, GLYCEROL, Immunoglobulin G-binding protein G, ...
著者Cunningham, T.F, McGoff, M.S, Sengupta, I, Jaroniec, C.P, Horne, W.S, Saxena, S.K.
登録日2011-12-14
公開日2012-08-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献High-resolution structure of a protein spin-label in a solvent-exposed beta-sheet and comparison with DEER spectroscopy.
Biochemistry, 51, 2012
3Q8Q
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BU of 3q8q by Molmil
Human DNA polymerase iota incorporating dATP opposite 8-oxo-guanine
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
著者Kirouac, K.N, Ling, H.
登録日2011-01-06
公開日2011-02-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.031 Å)
主引用文献Unique active site promotes error-free replication opposite an 8-oxo-guanine lesion by human DNA polymerase iota.
Proc.Natl.Acad.Sci.USA, 108, 2011
4FS2
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BU of 4fs2 by Molmil
Base pairing mechanism of N2,3-ethenoguanine with dCTP by human polymerase iota
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*TP*CP*TP*(EFG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'), DNA polymerase iota, ...
著者Zhao, L.
登録日2012-06-26
公開日2012-08-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Basis of Miscoding of the DNA Adduct N2,3-Ethenoguanine by Human Y-family DNA Polymerases.
J.Biol.Chem., 287, 2012
3G6X
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BU of 3g6x by Molmil
Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase iota, MAGNESIUM ION, ...
著者Nair, D.T, Aggarwal, A.K.
登録日2009-02-09
公開日2009-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota.
Structure, 17, 2009
3Q8S
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Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine
分子名称: DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase iota, ...
著者Kirouac, K.N, Ling, H.
登録日2011-01-06
公開日2011-02-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Human DNA polymerase iota incorporating dTTP opposite 8-oxo-guanine
To be Published
6WFW
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BU of 6wfw by Molmil
Crystal structure of Fab364 in complex with NPNA2 peptide from circumsporozoite protein
分子名称: Fab364 heavy chain, Fab364 light chain, Immunoglobulin G-binding protein G, ...
著者Pholcharee, T, Oyen, D, Wilson, I.A.
登録日2020-04-04
公開日2020-07-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.093 Å)
主引用文献Structural and biophysical correlation of anti-NANP antibodies with in vivo protection against P. falciparum.
Nat Commun, 12, 2021
4EBE
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BU of 4ebe by Molmil
Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', ...
著者Eoff, R.L, Ketkar, A, Banerjee, S.
登録日2012-03-23
公開日2012-06-13
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota.
J.Am.Chem.Soc., 134, 2012
3G6Y
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BU of 3g6y by Molmil
Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position
分子名称: DNA polymerase iota, MAGNESIUM ION, Primer DNA strand, ...
著者Nair, D.T, Aggarwal, A.K.
登録日2009-02-09
公開日2009-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota
Structure, 17, 2009
5HI1
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BU of 5hi1 by Molmil
Backbone Modifications in the Protein GB1 Helix: Aib24, beta-3-Lys28, beta-3-Lys31, Aib35
分子名称: ACETATE ION, Immunoglobulin G-binding protein G
著者Tavenor, N.A, Reinert, Z.E, Lengyel, G.A, Griffith, B.D, Horne, W.S.
登録日2016-01-11
公開日2016-02-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Comparison of design strategies for alpha-helix backbone modification in a protein tertiary fold.
Chem.Commun.(Camb.), 52, 2016
4WH4
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BU of 4wh4 by Molmil
Protein GB1 Quadruple Mutant I6H/N8H/K28H/Q32H
分子名称: GLYCEROL, Immunoglobulin G-binding protein G, SULFATE ION
著者Cunningham, T.C, Horne, W.S, Saxena, S.
登録日2014-09-19
公開日2015-08-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The double-histidine Cu2+-binding motif: a highly rigid, site-specific spin probe for electron spin resonance distance measurements.
Angew.Chem.Int.Ed.Engl., 54, 2015
1UWX
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BU of 1uwx by Molmil
P1.2 serosubtype antigen derived from N. meningitidis PorA in complex with Fab fragment
分子名称: ANTIBODY, CLASS 1 OUTER MEMBRANE PROTEIN VARIABLE REGION 2, PROTEIN G-PRIME
著者Tzitzilonis, C, Prince, S.M, Collins, R.F, Maiden, M.C.J, Feavers, I.M, Derrick, J.P.
登録日2004-02-12
公開日2005-06-15
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Variation and Immune Recognition of the P1.2 Subtype Meningococcal Antigen.
Proteins: Struct., Funct., Bioinf., 62, 2005
3G6V
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BU of 3g6v by Molmil
DNA synthesis across an abasic lesion by human DNA polymerase-iota
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA polymerase iota, MAGNESIUM ION, ...
著者Nair, D.T, Aggarwal, A.K.
登録日2009-02-09
公開日2009-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota
Structure, 17, 2009
5BMG
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BU of 5bmg by Molmil
Nitroxide Spin Labels in Protein GB1: E15 Mutant
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Immunoglobulin G-binding protein G, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
著者Cunningham, T.C, Horne, W.S, Saxena, S.
登録日2015-05-22
公開日2016-04-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Rotameric preferences of a protein spin label at edge-strand beta-sheet sites.
Protein Sci., 25, 2016
3GV7
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BU of 3gv7 by Molmil
Human DNA polymerase iota in complex with T template DNA and incoming dTTP
分子名称: 5'-D(*AP*GP*GP*AP*CP*CP*C)-3', 5'-D(P*AP*TP*GP*GP*GP*TP*CP*CP*T)-3', DNA polymerase iota, ...
著者Kirouac, K.N, Ling, H.
登録日2009-03-30
公開日2009-06-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis of error-prone replication and stalling at a thymine base by human DNA polymerase iota
Embo J., 28, 2009
3H4D
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BU of 3h4d by Molmil
Ternary complex of human DNA polymerase iota with template U/T and incoming dGTP
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC)), 5'-D(*TP*(BRU)P*GP*GP*GP*TP*CP*CP*T), ...
著者Jain, R, Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
登録日2009-04-18
公開日2009-07-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Replication across template T/U by human DNA polymerase-iota.
Structure, 17, 2009
4OZA
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BU of 4oza by Molmil
Backbone Modifications in the Protein GB1 Helix: beta-3-Ala24, beta-3-Lys28, beta-3-Gln32, beta-3-Asp36
分子名称: ISOPROPYL ALCOHOL, Streptococcal Protein GB1 Backbone Modified Variant: beta-3-Ala24, beta-3-Lys28, ...
著者Reinert, Z.E, Horne, W.S.
登録日2014-02-14
公開日2014-07-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Folding Thermodynamics of Protein-Like Oligomers with Heterogeneous Backbones.
Chem Sci, 5, 2014
6NLB
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BU of 6nlb by Molmil
Crystal structure of de novo designed metal-controlled dimer of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G (L12H, E15V, T16L, T18I, V29H, Y33H, N37L)-apo
分子名称: Immunoglobulin G-binding protein G, MAGNESIUM ION
著者Maniaci, B, Stec, B, Huxford, T.
登録日2019-01-08
公開日2019-01-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Design of High-Affinity Metal-Controlled Protein Dimers.
Biochemistry, 58, 2019
1ZET
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BU of 1zet by Molmil
X-ray data do not support hoogsteen base-pairing during replication by human polymerase iota
分子名称: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*AP*GP*GP*GP*(BRU)P*CP*CP*(BRU)P*(BRU)P*CP*CP*CP*CP*C)-3', MAGNESIUM ION, ...
著者Wang, J.
登録日2005-04-19
公開日2005-07-19
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献DNA polymerases: Hoogsteen base-pairing in DNA replication?
Nature, 437, 2005
1T3N
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BU of 1t3n by Molmil
Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP
分子名称: MAGNESIUM ION, Primer DNA strand, THYMIDINE-5'-TRIPHOSPHATE, ...
著者Nair, D.T, Johnson, R.E, Prakash, S, Prakash, L, Aggarwal, A.K.
登録日2004-04-27
公開日2004-07-20
最終更新日2018-04-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing.
Nature, 430, 2004
2DPI
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BU of 2dpi by Molmil
Ternary complex of hPoli with DNA and dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*(EDA)P*GP*GP*GP*TP*CP*CP*T)-3', ...
著者Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
登録日2006-05-12
公開日2006-07-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Hoogsteen base pair formation promotes synthesis opposite the 1,N(6)-ethenodeoxyadenosine lesion by human DNA polymerase iota.
Nat.Struct.Mol.Biol., 13, 2006
3H40
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BU of 3h40 by Molmil
Binary complex of human DNA polymerase iota with template U/T
分子名称: 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*(BRU)P*GP*GP*GP*TP*CP*CP*T)-3', DNA polymerase iota, ...
著者Jain, R, Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
登録日2009-04-17
公開日2009-07-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Replication across template T/U by human DNA polymerase-iota.
Structure, 17, 2009
2DPJ
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BU of 2dpj by Molmil
structure of hPoli with DNA and dTTP
分子名称: 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*(EDA)P*GP*GP*GP*TP*CP*CP*T)-3', DNA polymerase iota, ...
著者Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
登録日2006-05-12
公開日2006-07-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Hoogsteen base pair formation promotes synthesis opposite the 1,N(6)-ethenodeoxyadenosine lesion by human DNA polymerase iota.
Nat.Struct.Mol.Biol., 13, 2006
4OZC
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BU of 4ozc by Molmil
Backbone Modifications in the Protein GB1 Helix and Loops: beta-ACPC21, beta-ACPC24, beta-3-Lys28, beta-3-Lys31, beta-ACPC35, beta-ACPC40
分子名称: GLYCEROL, SULFATE ION, Streptococcal Protein GB1 Backbone Modified Variant: beta-ACPC21, ...
著者Reinert, Z.E, Horne, W.S.
登録日2014-02-14
公開日2014-07-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Folding Thermodynamics of Protein-Like Oligomers with Heterogeneous Backbones.
Chem Sci, 5, 2014

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