PDB: 92638 resultsInfo pagesStatus searchChemie searchBIRD

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1S69	The X-ray structure of the cyanobacteria Synechocystis hemoglobin "cyanoglobin" with cyanide ligand Descriptor: CITRATE ANION, CYANIDE ION, Cyanoglobin, ... Authors: Trent III, J.T, Kundu, S, Hoy, J.A, Hargrove, M.S. Deposit date: 2004-01-22 Release date: 2004-09-21 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Crystallographic analysis of synechocystis cyanoglobin reveals the structural changes accompanying ligand binding in a hexacoordinate hemoglobin. J.Mol.Biol., 341, 2004
6HWP	Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD) Descriptor: A3_bGFPD, MALONATE ION, SODIUM ION Authors: Li de la Sierra-Gallay, I, Leger, C. Deposit date: 2018-10-12 Release date: 2018-10-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.547 Å) Cite: Ligand-induced conformational switch in an artificial bidomain protein scaffold. Sci Rep, 9, 2019
4NVA	Predicting protein conformational response in prospective ligand discovery Descriptor: Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
4NVL	Predicting protein conformational response in prospective ligand discovery. Descriptor: 1-(1H-benzimidazol-1-yl)propan-2-one, Cytochrome c peroxidase, PHOSPHATE ION, ... Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.432 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
4NVH	Predicting protein conformational response in prospective ligand discovery Descriptor: 3-nitroquinolin-4-amine, Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
4NVK	Predicting protein conformational response in prospective ligand discovery. Descriptor: Cytochrome c peroxidase, N~2~,N~2~-diethylquinazoline-2,4-diamine, PHOSPHATE ION, ... Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
7U56	Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-03-01 Release date: 2022-03-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP to be published
1XJ6	Structure of bjFixLH in the unliganded ferrous form Descriptor: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ... Authors: Key, J, Moffat, K. Deposit date: 2004-09-22 Release date: 2005-03-29 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling Biochemistry, 44, 2005
5U8C	CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX WITH GLYCINE AND NVP-AAM077 Descriptor: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A, GLYCEROL, ... Authors: Romero-Hernandez, A, Furukawa, H. Deposit date: 2016-12-14 Release date: 2017-05-17 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.598 Å) Cite: Novel Mode of Antagonist Binding in NMDA Receptors Revealed by the Crystal Structure of the GluN1-GluN2A Ligand-Binding Domain Complexed to NVP-AAM077. Mol. Pharmacol., 92, 2017
6AVQ	The Therapeutic Antibody LM609 Selectively Inhibits Ligand Binding to Human alpha-V beta-3 Integrin via Steric Hindrance Descriptor: Integrin alpha-V, Integrin beta-3, LM609 Fab heavy chain, ... Authors: Borst, A.J, James, Z.N, Zagotta, W.N, Ginsberg, M, Rey, F.A, DiMaio, F, Backovic, M, Veesler, D. Deposit date: 2017-09-04 Release date: 2017-11-01 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (35 Å) Cite: The Therapeutic Antibody LM609 Selectively Inhibits Ligand Binding to Human alpha V beta 3 Integrin via Steric Hindrance. Structure, 25, 2017
4C9R	Xenopus ZNRF3 ectodomain in complex with Xenopus RSPO2 Fu1-Fu2 crystal form I Descriptor: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3, R-SPONDIN-2 Authors: Zebisch, M, Jones, E.Y. Deposit date: 2013-10-02 Release date: 2013-11-20 Last modified: 2013-11-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin. Nat.Commun., 4, 2013
4C99	Mouse ZNRF3 ectodomain in complex with mouse RSPO2 Fu1-Fu2 crystal form I Descriptor: CHLORIDE ION, E3 UBIQUITIN-PROTEIN LIGASE ZNRF3, R-SPONDIN-2 Authors: Zebisch, M, Jones, E.Y. Deposit date: 2013-10-02 Release date: 2013-11-20 Last modified: 2013-11-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin. Nat.Commun., 4, 2013
4NVN	Predicting protein conformational response in prospective ligand discovery Descriptor: 2,3-dihydrobenzo[h][1,6]naphthyridin-4(1H)-one, Cytochrome c peroxidase, PHOSPHATE ION, ... Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
4NVE	Predicting protein conformational response in prospective ligand discovery Descriptor: BENZIMIDAZOLE, Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
4NVO	Predicting protein conformational response in prospective ligand discovery Descriptor: 3-(thiophen-2-yl)-6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.71 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
4NVG	Predicting protein conformational response in prospective ligand discovery Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cytochrome c peroxidase, PHOSPHATE ION, ... Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.742 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
7PT0	SCO3201 with putative ligand Descriptor: SPERMIDINE, TetR family transcriptional regulator Authors: Werten, S, Palm, G.J, Hinrichs, W. Deposit date: 2021-09-25 Release date: 2021-10-20 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Crystal structures of free and ligand-bound forms of the TetR/AcrR-like regulator SCO3201 from Streptomyces coelicolor suggest a novel allosteric mechanism. Febs J., 290, 2023
5AT1	STRUCTURAL CONSEQUENCES OF EFFECTOR BINDING TO THE T STATE OF ASPARTATE CARBAMOYLTRANSFERASE. CRYSTAL STRUCTURES OF THE UNLIGATED AND ATP-, AND CTP-COMPLEXED ENZYMES AT 2.6-ANGSTROMS RESOLUTION Descriptor: ASPARTATE CARBAMOYLTRANSFERASE (T STATE), CATALYTIC CHAIN, ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN, ... Authors: Stevens, R.C, Gouaux, J.E, Lipscomb, W.N. Deposit date: 1990-04-26 Release date: 1990-10-15 Last modified: 2017-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural consequences of effector binding to the T state of aspartate carbamoyltransferase: crystal structures of the unligated and ATP- and CTP-complexed enzymes at 2.6-A resolution. Biochemistry, 29, 1990
6PKE	Myocilin OLF mutant N428E/D478S Descriptor: Myocilin Authors: Lieberman, R.L, Hill, S.E. Deposit date: 2019-06-29 Release date: 2019-09-11 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Calcium-ligand variants of the myocilin olfactomedin propeller selected from invertebrate phyla reveal cross-talk with N-terminal blade and surface helices. Acta Crystallogr D Struct Biol, 75, 2019
1M5D	X-RAY STRUCTURE OF THE GLUR2 LIGAND BINDING CORE (S1S2J-Y702F) IN COMPLEX WITH Br-HIBO AT 1.73 A RESOLUTION Descriptor: (S)-2-AMINO-3-(4-BROMO-3-HYDROXY-ISOXAZOL-5-YL)PROPIONIC ACID, Glutamate receptor 2, SULFATE ION Authors: Hogner, A, Kastrup, J.S, Jin, R, Liljefors, T, Mayer, M.L, Egebjerg, J, Larsen, I.K, Gouaux, E. Deposit date: 2002-07-09 Release date: 2002-09-18 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Structural Basis for AMPA Receptor Activation and Ligand Selectivity: Crystal Structures of Five Agonist Complexes with the GluR2 Ligand-binding Core J.Mol.Biol., 322, 2002
6PKF	Myocilin OLF mutant N428E/D478K Descriptor: GLYCEROL, Myocilin Authors: Lieberman, R.L, Hill, S.E. Deposit date: 2019-06-29 Release date: 2019-09-11 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.484 Å) Cite: Calcium-ligand variants of the myocilin olfactomedin propeller selected from invertebrate phyla reveal cross-talk with N-terminal blade and surface helices. Acta Crystallogr D Struct Biol, 75, 2019
7ZBZ	CAND1 delhairpin-SCF-SKP2 CAND1 partly engaged SCF partly rocked Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ... Authors: Baek, K, Schulman, B.A. Deposit date: 2022-03-24 Release date: 2023-04-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Systemwide disassembly and assembly of SCF ubiquitin ligase complexes. Cell, 186, 2023
7Z8R	CAND1-CUL1-RBX1 Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ... Authors: Baek, K, Schulman, B.A. Deposit date: 2022-03-18 Release date: 2023-04-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Systemwide disassembly and assembly of SCF ubiquitin ligase complexes. Cell, 186, 2023
7Z8T	CAND1-SCF-SKP2 CAND1 engaged SCF rocked Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ... Authors: Baek, K, Schulman, B.A. Deposit date: 2022-03-18 Release date: 2023-04-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3 Å) Cite: Systemwide disassembly and assembly of SCF ubiquitin ligase complexes. Cell, 186, 2023
7Z8V	CAND1-SCF-SKP2 (SKP1deldel) CAND1 engaged SCF rocked Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ... Authors: Baek, K, Schulman, B.A. Deposit date: 2022-03-18 Release date: 2023-04-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Systemwide disassembly and assembly of SCF ubiquitin ligase complexes. Cell, 186, 2023

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