Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9F31
DownloadVisualize
BU of 9f31 by Molmil
Crystal structure of MELK with a covalent compound GCL 99
Descriptor: Maternal embryonic leucine zipper kinase, N-[4-(1H-indazol-5-yl)phenyl]propanamide
Authors:Wang, G.Q, Seidler, N, Gehringer, M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-04-24
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the Protein Kinases' Cysteinome by Covalent Fragments.
Angew.Chem.Int.Ed.Engl., 64, 2025
4OOK
DownloadVisualize
BU of 4ook by Molmil
Third Metal bound M.tuberculosis methionine aminopeptidase
Descriptor: COBALT (II) ION, Methionine aminopeptidase 2, SODIUM ION
Authors:Reddi, R, Addlagatta, A.
Deposit date:2014-02-03
Release date:2015-02-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Selective targeting of the conserved active site cysteine of Mycobacterium tuberculosis methionine aminopeptidase with electrophilic reagents
Febs J., 281, 2014
2NC2
DownloadVisualize
BU of 2nc2 by Molmil
Structure, Dynamics and functional Aspects of the antifungal protein sfPAFB
Descriptor: Antifungal protein
Authors:Batta, G, Fizil, A, Hajdu, D.
Deposit date:2016-03-17
Release date:2017-04-19
Last modified:2024-11-27
Method:SOLUTION NMR
Cite:New Antimicrobial Potential and Structural Properties of PAFB: A Cationic, Cysteine-Rich Protein from Penicillium chrysogenum Q176.
Sci Rep, 8, 2018
7KYZ
DownloadVisualize
BU of 7kyz by Molmil
Solution structures of full-length K-RAS bound to GDP
Descriptor: Isoform 2B of GTPase KRas
Authors:Sharma, A.K, Maciag, A.E.
Deposit date:2020-12-09
Release date:2022-06-15
Last modified:2025-05-28
Method:SOLUTION NMR
Cite:Blocking C-terminal processing of KRAS4b via a direct covalent attack on the CaaX-box cysteine.
Proc.Natl.Acad.Sci.USA, 122, 2025
7ZI0
DownloadVisualize
BU of 7zi0 by Molmil
Structure of human Smoothened in complex with cholesterol and SAG
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide, CHOLESTEROL, ...
Authors:Byrne, E.F.X, Woolley, R.E, Ansell, B, Sansom, M.S.P, Newstead, S, Siebold, C.
Deposit date:2022-04-07
Release date:2022-06-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Patched 1 regulates Smoothened by controlling sterol binding to its extracellular cysteine-rich domain.
Sci Adv, 8, 2022
6GBN
DownloadVisualize
BU of 6gbn by Molmil
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Cytophaga hutchinsonii in complex with adenosine
Descriptor: ADENOSINE, Adenosylhomocysteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Czyrko, J, Jaskolski, M, Brzezinski, K.
Deposit date:2018-04-15
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of S-adenosyl-L-homocysteine hydrolase from Cytophaga hutchinsonii, a case of combination of crystallographic and non-crystallographic symmetry.
Croatica Chemica Acta, 91, 2018
2JP0
DownloadVisualize
BU of 2jp0 by Molmil
Solution structure of the N-terminal extraceullular domain of the lymphocyte receptor CD5 calculated using inferential structure determination (ISD)
Descriptor: T-cell surface glycoprotein CD5
Authors:Garza-Garcia, A, Harris, R, Esposito, D, Driscoll, P.C, Rieping, W.
Deposit date:2007-04-16
Release date:2008-02-26
Last modified:2024-11-27
Method:SOLUTION NMR
Cite:Three-dimensional solution structure and conformational plasticity of the N-terminal scavenger receptor cysteine-rich domain of human CD5
J.Mol.Biol., 378, 2008
2JOP
DownloadVisualize
BU of 2jop by Molmil
Solution structure of the N-terminal extracellular domain of the lymphocyte receptor CD5 (CD5 domain 1)
Descriptor: T-cell surface glycoprotein CD5
Authors:Garza-Garcia, A, Harris, R, Esposito, D, Driscoll, P.C.
Deposit date:2007-03-19
Release date:2008-02-26
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Three-dimensional solution structure and conformational plasticity of the N-terminal scavenger receptor cysteine-rich domain of human CD5
J.Mol.Biol., 378, 2008
3PNR
DownloadVisualize
BU of 3pnr by Molmil
Structure of PbICP-C in complex with falcipain-2
Descriptor: CADMIUM ION, Falcipain 2, GLYCEROL, ...
Authors:Hansen, G, Hilgenfeld, R.
Deposit date:2010-11-19
Release date:2011-07-27
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the regulation of cysteine-protease activity by a new class of protease inhibitors in Plasmodium.
Structure, 19, 2011
8P1Z
DownloadVisualize
BU of 8p1z by Molmil
Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT)
Descriptor: Serine--tRNA ligase, cytoplasmic
Authors:Kekez, I, Soic, R, Rokov-Plavec, J, Matkovic-Calogovic, D.
Deposit date:2023-05-13
Release date:2024-05-22
Last modified:2024-12-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Evolutionarily conserved cysteines in plant cytosolic seryl-tRNA synthetase are important for its resistance to oxidation.
Febs Lett., 597, 2023
8P1Y
DownloadVisualize
BU of 8p1y by Molmil
Arabidopsis thaliana mutated variant C244S of seryl-tRNA synthetase
Descriptor: Serine--tRNA ligase, cytoplasmic
Authors:Kekez, I, Soic, R, Rokov-Plavec, J, Matkovic-Calogovic, D.
Deposit date:2023-05-13
Release date:2024-05-22
Last modified:2024-12-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Evolutionarily conserved cysteines in plant cytosolic seryl-tRNA synthetase are important for its resistance to oxidation.
Febs Lett., 597, 2023
4MAO
DownloadVisualize
BU of 4mao by Molmil
RSK2 T493M C-Terminal Kinase Domain in Complex with RMM58
Descriptor: (2Z)-2-(1H-1,2,4-triazol-1-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]prop-2-enenitrile, Ribosomal protein S6 kinase alpha-3, SODIUM ION
Authors:Miller, R.M, Taunton, J.
Deposit date:2013-08-16
Release date:2014-10-22
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Design of reversible, cysteine-targeted Michael acceptors guided by kinetic and computational analysis.
J.Am.Chem.Soc., 136, 2014
7XES
DownloadVisualize
BU of 7xes by Molmil
NifS with L-penicillamine
Descriptor: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, CHLORIDE ION, Cysteine desulfurase IscS, ...
Authors:Nakamura, R, Fujishiro, T.
Deposit date:2022-03-31
Release date:2023-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
6AY8
DownloadVisualize
BU of 6ay8 by Molmil
Cartilage homing cysteine-dense-peptides
Descriptor: Potassium channel toxin alpha-KTx 15.8, SULFATE ION
Authors:Gewe, M.M, Strong, R.K, Watson, A.
Deposit date:2017-09-07
Release date:2018-08-22
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Cartilage homing cysteine-dense-peptides
To Be Published
1PFP
DownloadVisualize
BU of 1pfp by Molmil
CATHELIN-LIKE MOTIF OF PROTEGRIN-3
Descriptor: Protegrin 3
Authors:Strub, M.-P, Hoh, F, Sanchez, J.-F, Strub, J.M, Bock, A, Aumelas, A, Dumas, C.
Deposit date:2003-05-27
Release date:2003-11-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Selenomethionine and Selenocysteine Double Labeling Strategy for Crystallographic Phasing
Structure, 11, 2003
5FNV
DownloadVisualize
BU of 5fnv by Molmil
a new complex structure of tubulin with an alpha-beta unsaturated lactone
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Wang, Y, Naismith, J, Zhu, X.
Deposit date:2015-11-16
Release date:2016-05-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Pironetin Reacts Covalently with Cysteine-316 of Alpha-Tubulin to Destabilize Microtubule.
Nat.Commun., 7, 2016
6AY7
DownloadVisualize
BU of 6ay7 by Molmil
Cartilage homing cysteine-dense-peptides
Descriptor: CHLORIDE ION, Potassium channel toxin alpha-KTx 3.5, SULFATE ION, ...
Authors:Gewe, M.M, Strong, R.K.
Deposit date:2017-09-07
Release date:2018-08-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Cartilage homing cysteine-dense-peptides
To Be Published
5G3P
DownloadVisualize
BU of 5g3p by Molmil
Bacillus cereus formamidase (BceAmiF) acetylated at the active site.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Gavira, J.A, Conejero-Muriel, M, Martinez-Rodriguez, S.
Deposit date:2016-04-29
Release date:2017-04-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:A novel cysteine carbamoyl-switch is responsible for the inhibition of formamidase, a nitrilase superfamily member.
Arch.Biochem.Biophys., 662, 2019
5G3O
DownloadVisualize
BU of 5g3o by Molmil
Bacillus cereus formamidase (BceAmiF) inhibited with urea.
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, DI(HYDROXYETHYL)ETHER, FORMAMIDASE, ...
Authors:Gavira, J.A, Martinez-Rodriguez, S, Conejero-Muriel, M.
Deposit date:2016-04-29
Release date:2017-04-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A novel cysteine carbamoyl-switch is responsible for the inhibition of formamidase, a nitrilase superfamily member.
Arch.Biochem.Biophys., 662, 2019
1PAE
DownloadVisualize
BU of 1pae by Molmil
nucleoside diphosphate kinase
Descriptor: Nucleoside diphosphate kinase, cytosolic, SELENIUM ATOM
Authors:Strub, M.-P, Hoh, F, Sanchez, J.-F, Strub, J.M, Bock, A, Aumelas, A, Dumas, C.
Deposit date:2003-05-14
Release date:2003-11-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Selenomethionine and Selenocysteine Double Labeling Strategy for Crystallographic Phasing
Structure, 11, 2003
5YJH
DownloadVisualize
BU of 5yjh by Molmil
Structural insights into periostin functions
Descriptor: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Liu, H, Liu, J, Xu, F.
Deposit date:2017-10-10
Release date:2018-05-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.957 Å)
Cite:Structural characterizations of human periostin dimerization and cysteinylation.
FEBS Lett., 592, 2018
3ZZJ
DownloadVisualize
BU of 3zzj by Molmil
Structure of an engineered aspartate aminotransferase
Descriptor: ASPARTATE AMINOTRANSFERASE, BETA-MERCAPTOETHANOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Fernandez, F.J, deVries, D, Pena-Soler, E, Coll, M, Christen, P, Gehring, H, Vega, M.C.
Deposit date:2011-09-01
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Mechanism of a Cysteine Sulfinate Desulfinase Engineered on the Aspartate Aminotransferase Scaffold.
Biocim.Biophys.Acta, 1824, 2011
4XCH
DownloadVisualize
BU of 4xch by Molmil
S-ribosylhomocysteinase from Streptococcus suis
Descriptor: S-ribosylhomocysteine lyase, ZINC ION
Authors:Wang, Y, Mao, X, Lu, C.
Deposit date:2014-12-18
Release date:2015-06-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of LuxS from Streptococcus suis
To Be Published
4BBG
DownloadVisualize
BU of 4bbg by Molmil
Crystal structure of human kinesin Eg5 in complex with 3-(((2-Aminoethyl)sulfanyl)(3-ethylphenyl) phenylmethyl)phenol
Descriptor: 3-[(R)-2-azanylethylsulfanyl-(3-ethylphenyl)-phenyl-methyl]phenol, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
Authors:Kaan, H.Y.K, Kozielski, F.
Deposit date:2012-09-22
Release date:2013-05-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Optimized S-Trityl-L-Cysteine-Based Inhibitors of Kinesin Spindle Protein with Potent in Vivo Antitumor Activity in Lung Cancer Xenograft Models.
J.Med.Chem., 56, 2013
6XYH
DownloadVisualize
BU of 6xyh by Molmil
NMR solution structure of alpha-AnmTX-Ms11a-2 (Ms11a-2)
Descriptor: AMS3
Authors:Mineev, K.S, Kornilov, F.D, Lushpa, V.A, Logashina, Y.A, Maleeva, E.E, Andreev, Y.A.
Deposit date:2020-01-30
Release date:2021-02-10
Last modified:2025-02-19
Method:SOLUTION NMR
Cite:Peptides from the Sea Anemone Metridium senile with Modified Inhibitor Cystine Knot (ICK) Fold Inhibit Nicotinic Acetylcholine Receptors.
Toxins, 15, 2022

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon