PDB: 35712 resultsInfo pagesStatus searchChemie searchBIRD

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5J33	Isopropylmalate dehydrogenase in complex with NAD+ Descriptor: 3-isopropylmalate dehydrogenase 2, chloroplastic, MAGNESIUM ION, ... Authors: Jez, J.M, Lee, S.G. Deposit date: 2016-03-30 Release date: 2016-05-18 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.492 Å) Cite: Structure and Mechanism of Isopropylmalate Dehydrogenase from Arabidopsis thaliana: INSIGHTS ON LEUCINE AND ALIPHATIC GLUCOSINOLATE BIOSYNTHESIS. J.Biol.Chem., 291, 2016
1TQS	Golgi alpha-Mannosidase II In Complex With Salacinol Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,4-DIDEOXY-1,4-[[2S,3S)-2,4-DIHYDROXY-3-(SULFOXY)BUTYL]EPISULFONIUMYLIDENE]-D-ARABINITOL INNER SALT, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kuntz, D.A, Ghavami, A, Johnston, B.D, Pinto, B.M, Rose, D.R. Deposit date: 2004-06-18 Release date: 2005-01-25 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Crystallographic analysis of the interactions of Drosophila melanogaster Golgi alpha-mannosidase II with the naturally occurring glycomimetic salacinol and its analogues Tetrahedron Asymmetry, 16, 2005
1H1Y	The structure of the cytosolic D-ribulose-5-phosphate 3-epimerase from rice complexed with sulfate Descriptor: D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE, SULFATE ION Authors: Jelakovic, S, Schulz, G.E. Deposit date: 2002-07-25 Release date: 2003-01-30 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Structure and Catalytic Mechanism of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase from Rice J.Mol.Biol., 326, 2003
3NQB	Crystal Structure of Adenine Deaminase from Agrobacterium tumefaciens (str. C 58) Descriptor: Adenine deaminase 2, MANGANESE (II) ION Authors: Bagaria, A, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2010-06-29 Release date: 2010-07-28 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Crystal Structure of Adenine Deaminase from Agrobacterium tumefaciens (str. C 58) To be Published
5J5Z	Crystal structure of the D444V disease-causing mutant of the human dihydrolipoamide dehydrogenase Descriptor: Dihydrolipoyl dehydrogenase, mitochondrial, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Szabo, E, Mizsei, R, Zambo, Z, Torocsik, B, Weiss, M.S, Adam-Vizi, V, Ambrus, A. Deposit date: 2016-04-04 Release date: 2017-11-15 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Crystal structures of the disease-causing D444V mutant and the relevant wild type human dihydrolipoamide dehydrogenase. Free Radic. Biol. Med., 124, 2018
1GQI	Structure of Pseudomonas cellulosa alpha-D-glucuronidase Descriptor: 1,2-ETHANEDIOL, ALPHA-GLUCURONIDASE, COBALT (II) ION, ... Authors: Nurizzo, D, Nagy, T, Gilbert, H.J, Davies, G.J. Deposit date: 2001-11-26 Release date: 2002-09-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.48 Å) Cite: The Structural Basis for Catalysis and Specificity of the Pseudomonas Cellulosa Alpha-Glucuronidase, Glca67A Structure, 10, 2002
5IZ4	Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, ADENOSINE-5'-DIPHOSPHATE, Putative short-chain dehydrogenase/reductase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2016-03-24 Release date: 2016-05-04 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans to be published
1GUZ	Structural Basis for Thermophilic Protein Stability: Structures of Thermophilic and Mesophilic Malate Dehydrogenases Descriptor: MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE Authors: Dalhus, B, Sarinen, M, Sauer, U.H, Eklund, P, Johansson, K, Karlsson, A, Ramaswamy, S, Bjork, A, Synstad, B, Naterstad, K, Sirevag, R, Eklund, H. Deposit date: 2002-02-04 Release date: 2002-02-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Basis for Thermophilic Protein Stability: Structures of Thermophilic and Mesophilic Malate Dehydrogenases J.Mol.Biol., 318, 2002
5R8D	PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z1745658474 in complex with INTERLEUKIN-1 BETA Descriptor: 2-(trifluoromethyl)pyrimidine-5-carboxamide, Interleukin-1 beta, SULFATE ION Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-03 Release date: 2020-04-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
5R8V	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N09139b in complex with MAP kinase p38-alpha Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.479 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
5ITX	Crystal Structure of Human NEIL1(P2G R242K) bound to duplex DNA containing Thymine Glycol Descriptor: DNA (26-MER), Endonuclease 8-like 1 Authors: Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C. Deposit date: 2016-03-17 Release date: 2016-07-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair Proc.Natl.Acad.Sci.USA, 113, 2016
7EA4	Crystal Structure of L182E D-Succinylase (DSA) from Cupriavidus sp. P4-10-C Descriptor: CACODYLIC ACID, CALCIUM ION, CARBONATE ION, ... Authors: Yamasaki, M, Sumida, Y. Deposit date: 2021-03-06 Release date: 2022-01-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Protein Engineering of d-Succinylase from Cupriavidus sp. for d-Amino Acid Synthesis and the Structural Implications. Adv.Synth.Catal., 363, 2021
1H09	Multimodular Pneumococcal Cell Wall Endolysin from phage Cp-1 Descriptor: LYSOZYME Authors: Hermoso, J.A, Monterroso, B, Albert, A, Garcia, P, Menendez, M, Martinez-Ripoll, M, Garcia, J.L. Deposit date: 2002-06-12 Release date: 2003-06-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Basis for Selective Recognition of Pneumococcal Cell Wall by Modular Endolysin from Phage Cp-1 Structure, 11, 2003
7EBY	Crystal structure of D-Succinylase (DSA) from Cupriavidus sp. P4-10-C Descriptor: CALCIUM ION, CARBONATE ION, D-succinylase, ... Authors: Yamasaki, M, Sumida, Y. Deposit date: 2021-03-11 Release date: 2022-01-26 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Protein Engineering of d-Succinylase from Cupriavidus sp. for d-Amino Acid Synthesis and the Structural Implications. Adv.Synth.Catal., 363, 2021
1H1Z	The structure of the cytosolic D-ribulose-5-phosphate 3-epimerase from rice complexed with sulfate and zinc Descriptor: D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE, SULFATE ION, ZINC ION Authors: Jelakovic, S, Schulz, G.E. Deposit date: 2002-07-25 Release date: 2003-01-30 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structure and Catalytic Mechanism of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase from Rice J.Mol.Biol., 326, 2003
5R9A	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N13838a in complex with MAP kinase p38-alpha Descriptor: 4-benzamido-2-methyl-pyrazole-3-carboxamide, CHLORIDE ION, GLYCEROL, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
4YUU	Crystal structure of oxygen-evolving photosystem II from a red alga Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Ago, H, Shen, J.-R. Deposit date: 2015-03-19 Release date: 2016-01-20 Last modified: 2020-02-05 Method: X-RAY DIFFRACTION (2.7700038 Å) Cite: Novel Features of Eukaryotic Photosystem II Revealed by Its Crystal Structure Analysis from a Red Alga J.Biol.Chem., 291, 2016
7E0L	Class III hybrid cluster protein (HCP) from Methanothermobacter marburgensis Descriptor: FE (III) ION, FE-S-O HYBRID CLUSTER, Hydroxylamine reductase, ... Authors: Fujishiro, T. Deposit date: 2021-01-28 Release date: 2022-02-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases Nat Commun, 2023
5R9Q	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N07422b in complex with MAP kinase p38-alpha Descriptor: 1-phenylmethoxyurea, CHLORIDE ION, Mitogen-activated protein kinase 14, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.645 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
7E4D	Crystal structure of PlDBR Descriptor: Double Bond Reductase Authors: Sugimoto, K, Senda, M, Senda, T. Deposit date: 2021-02-11 Release date: 2022-02-02 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Exploration and structure-based engineering of alkenal double bond reductases catalyzing the C alpha C beta double bond reduction of coniferaldehyde. N Biotechnol, 68, 2022
5J55	The Structure and Mechanism of NOV1, a Resveratrol-Cleaving Dioxygenase Descriptor: 4-hydroxy-3-methoxybenzaldehyde, Carotenoid oxygenase, FE (III) ION, ... Authors: McAndrew, R.P, Pereira, J.H, Sathitsuksanoh, N, Sale, K.L, Simmons, B.A, Adams, P.D. Deposit date: 2016-04-01 Release date: 2016-11-30 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5RA5	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N11302a in complex with MAP kinase p38-alpha Descriptor: (1~{S},5~{R})-8-methyl-8-azabicyclo[3.2.1]octan-3-amine, CHLORIDE ION, DIMETHYL SULFOXIDE, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
4MUQ	Crystal Structure of Vancomycin Resistance D,D-dipeptidase VanXYg in complex with D-Ala-D-Ala phosphinate analog Descriptor: (2R)-3-[(R)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]-2-methylpropanoic acid, (2R)-3-[(R)-[(1S)-1-aminoethyl](hydroxy)phosphoryl]-2-methylpropanoic acid, 1,2-ETHANEDIOL, ... Authors: Stogios, P.J, Evdokimova, E, Meziane-Cherif, D, Di Leo, R, Yim, V, Courvalin, P, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2013-09-23 Release date: 2013-10-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.364 Å) Cite: Structural basis for the evolution of vancomycin resistance D,D-peptidases. Proc.Natl.Acad.Sci.USA, 111, 2014
4N9R	X-ray structure of the complex between hen egg white lysozyme and pentacholrocarbonyliridate(III) (1 day) Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ... Authors: Petruk, A.A, Bikiel, D.E, Vergara, A, Merlino, A. Deposit date: 2013-10-21 Release date: 2015-12-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Interaction between proteins and Ir based CO releasing molecules: mechanism of adduct formation and CO release. Inorg.Chem., 53, 2014
1GRF	SUBSTRATE BINDING AND CATALYSIS BY GLUTATHIONE REDUCTASE AS DERIVED FROM REFINED ENZYME: SUBSTRATE CRYSTAL STRUCTURES AT 2 ANGSTROMS RESOLUTION Descriptor: ACETAMIDE, FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE REDUCTASE, ... Authors: Karplus, P.A, Schulz, G.E. Deposit date: 1992-12-15 Release date: 1994-01-31 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2 Å) Cite: Substrate binding and catalysis by glutathione reductase as derived from refined enzyme: substrate crystal structures at 2 A resolution. J.Mol.Biol., 210, 1989

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