Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8FNY
DownloadVisualize
BU of 8fny by Molmil
Nucleotide-bound structure of a functional construct of eukaryotic elongation factor 2 kinase.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Piserchio, A, Isiorho, E.A, Dalby, K.N, Ghose, R.
Deposit date:2022-12-28
Release date:2023-05-03
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:ADP enhances the allosteric activation of eukaryotic elongation factor 2 kinase by calmodulin.
Proc.Natl.Acad.Sci.USA, 120, 2023
8FO6
DownloadVisualize
BU of 8fo6 by Molmil
Nucleotide-free structure of a functional construct of eukaryotic elongation factor 2 kinase.
Descriptor: CALCIUM ION, Calmodulin-1, Eukaryotic elongation factor 2 kinase, ...
Authors:Piserchio, A, Isiorho, E.A, Dalby, K.N, Ghose, R.
Deposit date:2022-12-29
Release date:2023-05-03
Method:X-RAY DIFFRACTION (2.553 Å)
Cite:ADP enhances the allosteric activation of eukaryotic elongation factor 2 kinase by calmodulin.
Proc.Natl.Acad.Sci.USA, 120, 2023
8FW5
DownloadVisualize
BU of 8fw5 by Molmil
Chimeric HsGATOR1-SpGtr-SpLam complex
Descriptor: ALUMINUM FLUORIDE, GATOR complex protein DEPDC5, GATOR complex protein NPRL2, ...
Authors:Tettoni, S.D, Egri, S.B, Doxsey, D.D, Ouch, C, Chang, J, Song, K, Xu, C, Shen, K.
Deposit date:2023-01-20
Release date:2023-07-26
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structure of the Schizosaccharomyces pombe Gtr-Lam complex reveals evolutionary divergence of mTORC1-dependent amino acid sensing.
Structure, 31, 2023
7SOQ
DownloadVisualize
BU of 7soq by Molmil
LaM domain of human LARP1 in complex with AAA RNA
Descriptor: Isoform 2 of La-related protein 1, RNA (5'-R(*AP*AP*A)-3')
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
7SOP
DownloadVisualize
BU of 7sop by Molmil
LaM domain of human LARP1 in complex with AAAUAA RNA
Descriptor: Isoform 2 of La-related protein 1, RNA (5'-R(P*AP*AP*AP*UP*AP*A)-3')
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
7SOS
DownloadVisualize
BU of 7sos by Molmil
LaM domain of human LARP1 in complex with AAAA RNA
Descriptor: Isoform 2 of La-related protein 1, POTASSIUM ION, RNA (5'-R(*AP*AP*AP*A)-3')
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
7SOV
DownloadVisualize
BU of 7sov by Molmil
LaM domain of human LARP1 in complex with AAAAAAAAAAA RNA polynucleotide
Descriptor: GLYCEROL, Isoform 2 of La-related protein 1, RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ...
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
7SOO
DownloadVisualize
BU of 7soo by Molmil
LaM domain of human LARP1
Descriptor: Isoform 2 of La-related protein 1, SODIUM ION, SULFATE ION
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
7SOR
DownloadVisualize
BU of 7sor by Molmil
LaM domain of human LARP1 in complex with AAA RNA
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Isoform 2 of La-related protein 1, ...
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
7SOU
DownloadVisualize
BU of 7sou by Molmil
LaM domain of human LARP1 in complex with AAAAAA polynucleotide
Descriptor: Isoform 2 of La-related protein 1, RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3')
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
7SOT
DownloadVisualize
BU of 7sot by Molmil
LaM domain of human LARP1 in complex with AAAAAA oligonucleotide
Descriptor: Isoform 2 of La-related protein 1, RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), SULFATE ION
Authors:Kozlov, G, Gehring, K.
Deposit date:2021-11-01
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural basis of 3'-end poly(A) RNA recognition by LARP1.
Nucleic Acids Res., 50, 2022
5D9G
DownloadVisualize
BU of 5d9g by Molmil
Crystal structure of TIPRL, TOR signaling pathway regulator-like, in complex with peptide
Descriptor: CHLORIDE ION, NICKEL (II) ION, PHOSPHATE ION, ...
Authors:Scorsato, V, Sandy, J, Brandao-Neto, J, Pereira, H.M, Smetana, J.H.C, Aparicio, R.
Deposit date:2015-08-18
Release date:2016-08-10
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the human Tip41 orthologue, TIPRL, reveals a novel fold and a binding site for the PP2Ac C-terminus.
Sci Rep, 6, 2016
5DJ4
DownloadVisualize
BU of 5dj4 by Molmil
Leucine-bound Sestrin2 from Homo sapiens
Descriptor: LEUCINE, Sestrin-2
Authors:Saxton, R.A, Knockenhauer, K.E, Schwartz, T.U.
Deposit date:2015-09-01
Release date:2015-11-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:Structural basis for leucine sensing by the Sestrin2-mTORC1 pathway.
Science, 351, 2016
7N8B
DownloadVisualize
BU of 7n8b by Molmil
Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
Descriptor: 18S RIBOSOMAL RNA, 25S, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ...
Authors:Rai, J, Zhao, Y, Li, H.
Deposit date:2021-06-14
Release date:2022-05-11
Last modified:2022-07-20
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.
Structure, 30, 2022
7OLE
DownloadVisualize
BU of 7ole by Molmil
Cryo-EM structure of the TELO2-TTI1-TTI2-RUVBL1-RUVBL2 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, RuvB-like 1, RuvB-like 2, ...
Authors:Pal, M, Llorca, O, Pearl, L.
Deposit date:2021-05-19
Release date:2021-07-07
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Structure of the TELO2-TTI1-TTI2 complex and its function in TOR recruitment to the R2TP chaperone.
Cell Rep, 36, 2021
5FVM
DownloadVisualize
BU of 5fvm by Molmil
Cryo electron microscopy of a complex of Tor and Lst8
Descriptor: SERINE/THREONINE-PROTEIN KINASE TOR2, TARGET OF RAPAMYCIN COMPLEX SUBUNIT LST8
Authors:Baretic, D, Berndt, A, Ohashi, Y, Johnson, C.M, Williams, R.L.
Deposit date:2016-02-09
Release date:2016-04-20
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Tor Forms a Dimer Through an N-Terminal Helical Solenoid with a Complex Topology
Nat.Commun., 7, 2016
5G5J
DownloadVisualize
BU of 5g5j by Molmil
Crystal structure of human CYP3A4 bound to metformin
Descriptor: CYTOCHROME P450 3A4, Metformin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.
Deposit date:2016-05-25
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria.
Cell Chem Biol, 24, 2017
5GV2
DownloadVisualize
BU of 5gv2 by Molmil
Crystal structure of Arginine-bound CASTOR1 from Homo sapiens
Descriptor: ARGININE, GATS-like protein 3, MAGNESIUM ION
Authors:Gai, Z.C, Wu, G.
Deposit date:2016-09-01
Release date:2017-09-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structural mechanism for the arginine sensing and regulation of CASTOR1 in the mTORC1 signaling pathway
Cell Discov, 2, 2016
5I2C
DownloadVisualize
BU of 5i2c by Molmil
Arginine-bound CASTOR1 from Homo sapiens
Descriptor: ACETATE ION, ARGININE, GATS-like protein 3
Authors:Saxton, R.A, Knockenhauer, K.E, Schwartz, T.U.
Deposit date:2016-02-08
Release date:2016-08-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Mechanism of arginine sensing by CASTOR1 upstream of mTORC1.
Nature, 536, 2016
7U8O
DownloadVisualize
BU of 7u8o by Molmil
Structure of porcine V-ATPase with mEAK7 and SidK, Rotary state 2
Descriptor: ATPase H(+)-transporting lysosomal accessory protein 2, ATPase H+ transporting accessory protein 1, Bacterial effector protein SidK, ...
Authors:Tan, Y.Z, Keon, K.A.
Deposit date:2022-03-09
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7.
Life Sci Alliance, 5, 2022
7U8Q
DownloadVisualize
BU of 7u8q by Molmil
Structure of porcine kidney V-ATPase with SidK, Rotary State 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase H(+)-transporting lysosomal accessory protein 2, ATPase H+ transporting accessory protein 1, ...
Authors:Tan, Y.Z, Keon, K.A.
Deposit date:2022-03-09
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7.
Life Sci Alliance, 5, 2022
7U8P
DownloadVisualize
BU of 7u8p by Molmil
Structure of porcine kidney V-ATPase with SidK, Rotary State 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase H(+)-transporting lysosomal accessory protein 2, ATPase H+ transporting accessory protein 1, ...
Authors:Tan, Y.Z, Keon, K.A.
Deposit date:2022-03-09
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7.
Life Sci Alliance, 5, 2022
7U8R
DownloadVisualize
BU of 7u8r by Molmil
Structure of porcine kidney V-ATPase with SidK, Rotary State 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase H(+)-transporting lysosomal accessory protein 2, ATPase H+ transporting accessory protein 1, ...
Authors:Tan, Y.Z, Keon, K.A.
Deposit date:2022-03-09
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7.
Life Sci Alliance, 5, 2022
7UHY
DownloadVisualize
BU of 7uhy by Molmil
Human GATOR2 complex
Descriptor: GATOR complex protein MIOS, GATOR complex protein WDR24, GATOR complex protein WDR59, ...
Authors:Rogala, K.B, Valenstein, M.L, Lalgudi, P.V.
Deposit date:2022-03-27
Release date:2022-07-20
Last modified:2022-08-03
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:Structure of the nutrient-sensing hub GATOR2.
Nature, 607, 2022
7Y62
DownloadVisualize
BU of 7y62 by Molmil
Crystal structure of human TFEB HLHLZ domain
Descriptor: Transcription factor EB
Authors:Yang, G, Li, P, Lin, Y, Liu, Z, Sun, H, Zhao, Z, Fang, P, Wang, J.
Deposit date:2022-06-18
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:A small-molecule drug inhibits autophagy gene expression through the central regulator TFEB.
Proc.Natl.Acad.Sci.USA, 120, 2023

220472

PDB entries from 2024-05-29

PDB statisticsPDBj update infoContact PDBjnumon