Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4FSK
DownloadVisualize
BU of 4fsk by Molmil
Urate oxidase-azide complex in anaerobic conditions
Descriptor: AZIDE ION, SODIUM ION, Uricase
Authors:Gabison, L, Colloc'h, N, El Hajji, M, Castro, B, Chiadmi, M, Prange, T.
Deposit date:2012-06-27
Release date:2013-07-03
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Azide and Cyanide Have Different Inhibition Modes of Urate Oxidase
To be Published
3A6E
DownloadVisualize
BU of 3a6e by Molmil
W174F mutant creatininase, type I
Descriptor: CACODYLATE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
375D
DownloadVisualize
BU of 375d by Molmil
A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2
Descriptor: DNA (5'-D(*CP*CP*CP*CP*CP*IP*IP*IP*IP*I)-3'), NETROPSIN
Authors:Chen, X, Rao, S.T, Sekar, K, Sundaralingam, M.
Deposit date:1998-01-14
Release date:1998-12-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Novel End-to-End Binding of Two Netropsins to the DNA Decamers d(CCCCCIIIII) 2, d(CCCBr5CCIIIII)2, d(CBr5CCCCIIIII)2
Nucleic Acids Res., 26, 1998
3A6H
DownloadVisualize
BU of 3a6h by Molmil
W154A mutant creatininase
Descriptor: CHLORIDE ION, Creatinine amidohydrolase, MANGANESE (II) ION, ...
Authors:Nakajima, Y, Yamashita, K, Ito, K, Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
2DF3
DownloadVisualize
BU of 2df3 by Molmil
The structure of Siglec-7 in complex with alpha(2,3)/alpha(2,6) disialyl lactotetraosyl 2-(trimethylsilyl)ethyl
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Attrill, H.
Deposit date:2006-02-23
Release date:2006-06-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of siglec-7 in complex with sialosides: leads for rational structure-based inhibitor design
Biochem.J., 397, 2006
2DF7
DownloadVisualize
BU of 2df7 by Molmil
Crystal structure of infectious bursal disease virus VP2 subviral particle
Descriptor: CALCIUM ION, CHLORIDE ION, structural polyprotein VP2
Authors:Ko, T.P, Lee, C.C, Wang, M.Y, Wang, A.H.
Deposit date:2006-02-27
Release date:2006-06-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of infectious bursal disease virus VP2 subviral particle at 2.6A resolution: Implications in virion assembly and immunogenicity.
J.Struct.Biol., 155, 2006
3RU3
DownloadVisualize
BU of 3ru3 by Molmil
Crystal structure of tm0922, a fusion of a domain of unknown function and ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Thermotoga maritima soaked with NADPH and ATP.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BETA-6-HYDROXY-1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE, MAGNESIUM ION, ...
Authors:Shumilin, I.A, Cymborowski, M, Lesley, S.A, Minor, W.
Deposit date:2011-05-04
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:Identification of unknown protein function using metabolite cocktail screening.
Structure, 20, 2012
4OP9
DownloadVisualize
BU of 4op9 by Molmil
Urate OXIDASE IN COMPLEX WITH 8-AZAXANTHINE
Descriptor: 8-AZAXANTHINE, SODIUM ION, Uricase
Authors:Colloc'h, N, Prange, T.
Deposit date:2014-02-05
Release date:2014-03-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Functional relevance of the internal hydrophobic cavity of urate oxidase.
Febs Lett., 588, 2014
2ATX
DownloadVisualize
BU of 2atx by Molmil
Crystal Structure of the TC10 GppNHp complex
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, small GTP binding protein TC10
Authors:Hemsath, L, Dvorsky, R, Fiegen, D, Carlier, M.F, Ahmadian, M.R.
Deposit date:2005-08-26
Release date:2005-09-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:An electrostatic steering mechanism of Cdc42 recognition by Wiskott-Aldrich syndrome proteins
Mol.Cell, 20, 2005
3AQU
DownloadVisualize
BU of 3aqu by Molmil
Crystal structure of a class V chitinase from Arabidopsis thaliana
Descriptor: At4g19810, CITRATE ANION
Authors:Numata, T, Ohnuma, T, Osawa, T, Fukamizo, T.
Deposit date:2010-11-19
Release date:2011-07-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:A class V chitinase from Arabidopsis thaliana: gene responses, enzymatic properties, and crystallographic analysis
Planta, 234, 2011
2ASP
DownloadVisualize
BU of 2asp by Molmil
Structure of Rabbit Actin In Complex With Reidispongiolide C
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Allingham, J.S, Zampella, A, D'Auria, M.V, Rayment, I.
Deposit date:2005-08-23
Release date:2005-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structures of microfilament destabilizing toxins bound to actin provide insight into toxin design and activity
Proc.Natl.Acad.Sci.Usa, 102, 2005
2AMD
DownloadVisualize
BU of 2amd by Molmil
Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N9
Descriptor: 3C-like proteinase, N-(3-FUROYL)-D-VALYL-L-VALYL-N~1~-((1R,2Z)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-D-LEUCINAMIDE
Authors:Yang, H, Xue, X, Yang, K, Zhao, Q, Bartlam, M, Rao, Z.
Deposit date:2005-08-09
Release date:2005-09-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design of Wide-Spectrum Inhibitors Targeting Coronavirus Main Proteases.
Plos Biol., 3, 2005
2ASO
DownloadVisualize
BU of 2aso by Molmil
Structure of Rabbit Actin In Complex With Sphinxolide B
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Allingham, J.S, Zampella, A, D'Auria, M.V, Rayment, I.
Deposit date:2005-08-23
Release date:2005-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of microfilament destabilizing toxins bound to actin provide insight into toxin design and activity
Proc.Natl.Acad.Sci.Usa, 102, 2005
3AXX
DownloadVisualize
BU of 3axx by Molmil
Functional analysis of hyperthermophilic endocellulase from the Archaeon Pyrococcus horikoshii
Descriptor: 458aa long hypothetical endo-1,4-beta-glucanase, PHOSPHATE ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Kim, H.-W, Ishikawa, K.
Deposit date:2011-04-18
Release date:2012-02-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots
Biochem.J., 437, 2011
3TN0
DownloadVisualize
BU of 3tn0 by Molmil
Structure of mouse Va14Vb8.2NKT TCR-mouse CD1d-a-C-Galactosylceramide complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Patel, O, Rossjohn, J.
Deposit date:2011-09-01
Release date:2011-12-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:NKT TCR Recognition of CD1d-{alpha}-C-Galactosylceramide.
J.Immunol., 187, 2011
3RUJ
DownloadVisualize
BU of 3ruj by Molmil
Crystal Structure of N-terminal region of yeast Atg7
Descriptor: Ubiquitin-like modifier-activating enzyme ATG7
Authors:Hong, S.B, Kim, B.W, Song, H.K.
Deposit date:2011-05-05
Release date:2011-11-23
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8.
Nat.Struct.Mol.Biol., 18, 2011
3B56
DownloadVisualize
BU of 3b56 by Molmil
Crystal structure of transthyretin in complex with 3,5-diiodosalicylic acid
Descriptor: 2-HYDROXY-3,5-DIIODO-BENZOIC ACID, Transthyretin
Authors:Gales, L, Damas, A.M.
Deposit date:2007-10-25
Release date:2008-01-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Iodination of salicylic acid improves its binding to transthyretin
Biochim.Biophys.Acta, 1784, 2008
2B4N
DownloadVisualize
BU of 2b4n by Molmil
Solution Structure of Glucose-Dependent Insulinotropic Polypeptide
Descriptor: Gastric inhibitory polypeptide
Authors:Alana, I, Hewage, C.M, O'Harte, F.P.M, Malthouse, J.P.G.
Deposit date:2005-09-26
Release date:2006-05-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR and alanine scan studies of glucose-dependent insulinotropic polypeptide in water.
J.Biol.Chem., 281, 2006
2B5E
DownloadVisualize
BU of 2b5e by Molmil
Crystal Structure of Yeast Protein Disulfide Isomerase
Descriptor: BARIUM ION, GLYCEROL, Protein disulfide-isomerase
Authors:Schindelin, H, Tian, G.
Deposit date:2005-09-28
Release date:2006-01-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure of yeast protein disulfide isomerase suggests cooperativity between its active sites.
Cell(Cambridge,Mass.), 124, 2006
3PK1
DownloadVisualize
BU of 3pk1 by Molmil
Crystal structure of Mcl-1 in complex with the BaxBH3 domain
Descriptor: Apoptosis regulator BAX, CADMIUM ION, Induced myeloid leukemia cell differentiation protein Mcl-1
Authors:Czabotar, P.E, Colman, P.M.
Deposit date:2010-11-11
Release date:2010-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.486 Å)
Cite:Mutation to Bax beyond the BH3 domain disrupts interactions with pro-survival proteins and promotes apoptosis
J.Biol.Chem., 286, 2011
2B8M
DownloadVisualize
BU of 2b8m by Molmil
Crystal structure of a rmlc-like cupin family protein with a double-stranded beta-helix fold (mj0764) from methanocaldococcus jannaschii at 1.70 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Hypothetical protein MJ0764, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2005-10-07
Release date:2005-11-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of (1499583) from METHANOCOCCUS JANNASCHII at 1.70 A resolution
To be published
2B2E
DownloadVisualize
BU of 2b2e by Molmil
RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsid
Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3', Coat protein
Authors:Horn, W.T, Tars, K, Grahn, E, Helgstrand, C, Baron, A.J, Lago, H, Adams, C.J, Peabody, D.S, Phillips, S.E.V, Stonehouse, N.J, Liljas, L, Stockley, P.G.
Deposit date:2005-09-19
Release date:2006-05-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2
Structure, 14, 2006
2E3Q
DownloadVisualize
BU of 2e3q by Molmil
Crystal structure of CERT START domain in complex with C18-ceramide (P212121)
Descriptor: DIMETHYL SULFOXIDE, Lipid-transfer protein CERT, N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE
Authors:Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
Deposit date:2006-11-28
Release date:2007-12-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2EFF
DownloadVisualize
BU of 2eff by Molmil
Crystal structure analysis of the complex between CyaY and Co(II)
Descriptor: COBALT (II) ION, Protein cyaY
Authors:Sica, F, Franzese, M.
Deposit date:2007-02-22
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Understanding the binding properties of an unusual metal-binding protein - a study of bacterial frataxin
Febs J., 274, 2007
3Q4B
DownloadVisualize
BU of 3q4b by Molmil
Clinically Useful Alkyl Amine Renin Inhibitors
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Renin, ...
Authors:Wu, Z, McKeever, B.M.
Deposit date:2010-12-23
Release date:2011-11-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Discovery of VTP-27999, an Alkyl Amine Renin Inhibitor with Potential for Clinical Utility.
ACS Med Chem Lett, 2, 2011

235666

PDB entries from 2025-05-07

PDB statisticsPDBj update infoContact PDBjnumon