Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9AX6
DownloadVisualize
BU of 9ax6 by Molmil
Tricomplex of RMC-6236, KRAS G12D, and CypA
Descriptor: (1R,2S)-N-[(1P,7S,9S,13R,20M)-21-ethyl-20-{2-[(1R)-1-methoxyethyl]-5-(4-methylpiperazin-1-yl)pyridin-3-yl}-17,17-dimethyl-8,14-dioxo-15-oxa-4-thia-9,21,27,28-tetraazapentacyclo[17.5.2.1~2,5~.1~9,13~.0~22,26~]octacosa-1(24),2,5(28),19,22,25-hexaen-7-yl]-2-methylcyclopropane-1-carboxamide, GTPase KRas, MAGNESIUM ION, ...
Authors:Tomlinson, A.C.A, Saldajeno-Concar, M, Knox, J.E, Yano, J.K.
Deposit date:2024-03-05
Release date:2024-04-17
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Translational and Therapeutic Evaluation of RAS-GTP Inhibition by RMC-6236 in RAS-Driven Cancers.
Cancer Discov, 14, 2024
8XCI
DownloadVisualize
BU of 8xci by Molmil
Open state of central tail fiber of bacteriophage lambda upon binding to LamB
Descriptor: Tip attachment protein J
Authors:Ge, X.F, Wang, J.W.
Deposit date:2023-12-09
Release date:2024-05-01
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structural mechanism of bacteriophage lambda tail's interaction with the bacterial receptor.
Nat Commun, 15, 2024
8VQ3
DownloadVisualize
BU of 8vq3 by Molmil
CDK2-CyclinE1 in complex with allosteric inhibitor I-198.
Descriptor: (8R)-N-[(2S,3R)-3-(cyclohexylmethoxy)-1-(morpholin-4-yl)-1-oxobutan-2-yl]-2-[(1S)-2,2-dimethylcyclopropane-1-carbonyl]-6-(1,3-thiazole-5-carbonyl)-2,6-diazaspiro[3.4]octane-8-carboxamide, Cyclin-dependent kinase 2, G1/S-specific cyclin-E1
Authors:Hirschi, M, Johnson, E, Zhang, Y, Liu, Z, Brodsky, O, Won, S.J, Nagata, A, Petroski, M.D, Majmudar, J.D, Niessen, S, VanArsdale, T, Gilbert, A.M, Hayward, M.M, Stewart, A.E, Nager, A.R, Melillo, B, Cravatt, B.
Deposit date:2024-01-17
Release date:2024-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Expanding the ligandable proteome by paralog hopping with covalent probes.
Biorxiv, 2024
8YKF
DownloadVisualize
BU of 8ykf by Molmil
The DSR2-DSAD1 complex with DSAD1 on the opposite sides
Descriptor: DSAD1, SIR2-like domain-containing protein
Authors:Zheng, J, Yang, X.
Deposit date:2024-03-05
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural insights into autoinhibition and activation of defense-associated sirtuin protein.
Int.J.Biol.Macromol., 277, 2024
8X23
DownloadVisualize
BU of 8x23 by Molmil
The Crystal Structure of MAPK13 from Biortus.
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Mitogen-activated protein kinase 13
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Pan, W.
Deposit date:2023-11-09
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Crystal Structure of MAPK13 from Biortus.
To Be Published
9F2K
DownloadVisualize
BU of 9f2k by Molmil
Myo-inositol-1-phosphate synthase from Thermochaetoides thermophila in complex with NAD
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, inositol-3-phosphate synthase
Authors:Traeger, T.K, Kyrilis, F.L, Hamdi, F, Kastritis, P.L.
Deposit date:2024-04-23
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Disorder-to-order active site capping regulates the rate-limiting step of the inositol pathway
Proc.Natl.Acad.Sci.USA, 2024
8VL0
DownloadVisualize
BU of 8vl0 by Molmil
The crystal structure of wild-type CYP199A4 bound to 4-(2-oxopropyl)benzoic acid
Descriptor: 4-(2-oxopropyl)benzoic acid, CHLORIDE ION, Cytochrome P450, ...
Authors:Podgorski, M.N, Bell, S.G.
Deposit date:2024-01-11
Release date:2024-05-08
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.837 Å)
Cite:Selective alpha-Hydroxyketone Formation and Subsequent C-C Bond Cleavage by Cytochrome P450 Monooxygenase Enzymes
Acs Catalysis, 14, 2024
9EY3
DownloadVisualize
BU of 9ey3 by Molmil
The FK1 domain of FKBP51 in complex with (3S,11S,11aS)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxylic acid
Descriptor: (1~{S},4~{S},7~{S},8~{S},9~{R})-13-[3,5-bis(chloranyl)phenyl]sulfonyl-8-ethenyl-2-oxidanylidene-3,13-diazatricyclo[7.3.1.0^{3,7}]tridecane-4-carboxylic acid, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Krajczy, P, Hausch, F.
Deposit date:2024-04-09
Release date:2024-06-12
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structure-Based Design of Ultrapotent Tricyclic Ligands for FK506-Binding Proteins.
Chemistry, 30, 2024
8W1R
DownloadVisualize
BU of 8w1r by Molmil
Cryo-EM structure of BTV core
Descriptor: Core protein VP3, RNA-directed RNA polymerase
Authors:Xia, X, Sung, P.Y, Martynowycz, M.W, Gonen, T, Roy, P, Zhou, Z.H.
Deposit date:2024-02-17
Release date:2024-04-24
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:RNA genome packaging and capsid assembly of bluetongue virus visualized in host cells.
Cell, 187, 2024
9F45
DownloadVisualize
BU of 9f45 by Molmil
cryo-EM structure of human LST2 bound to human mTOR complex 1
Descriptor: INOSITOL HEXAKISPHOSPHATE, Lateral signaling target protein 2 homolog, Regulatory-associated protein of mTOR, ...
Authors:Craigie, L.M, Maier, T.
Deposit date:2024-04-26
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:mTORC1 phosphorylates and stabilizes LST2 to negatively regulate EGFR
Proc.Natl.Acad.Sci.USA, 2024
8Y8Y
DownloadVisualize
BU of 8y8y by Molmil
Crystal structure of the PTPN21 FERM domain
Descriptor: CHLORIDE ION, Tyrosine-protein phosphatase non-receptor type 21
Authors:Lee, H.S, Ku, B.
Deposit date:2024-02-06
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Structural analysis of the FERM domain of human protein tyrosine phosphatase non-receptor type 21.
Acta Crystallogr.,Sect.F, 80, 2024
9AXX
DownloadVisualize
BU of 9axx by Molmil
Crystal structure of BRAF/MEK1 complex with NST-628 and an active RAF dimer
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Dual specificity mitogen-activated protein kinase kinase 1, ...
Authors:Quade, B, Huang, X.
Deposit date:2024-03-06
Release date:2024-04-17
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The Pan-RAF-MEK Nondegrading Molecular Glue NST-628 Is a Potent and Brain-Penetrant Inhibitor of the RAS-MAPK Pathway with Activity across Diverse RAS- and RAF-Driven Cancers.
Cancer Discov, 14, 2024
8WIK
DownloadVisualize
BU of 8wik by Molmil
Crystal structure of human FSP1
Descriptor: 6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE, Ferroptosis suppressor protein 1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Feng, S, Huang, X, Tang, D, Qi, S.
Deposit date:2023-09-24
Release date:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of human ferroptosis suppressive protein 1 in complex with flavin adenine dinucleotide and nicotinamide adenine nucleotide.
MedComm (2020), 5, 2024
8W19
DownloadVisualize
BU of 8w19 by Molmil
Cryo-EM structure of BTV star-subcore
Descriptor: Core protein VP3, VP6
Authors:Xia, X, Sung, P.Y, Martynowycz, M.W, Gonen, T, Roy, P, Zhou, Z.H.
Deposit date:2024-02-15
Release date:2024-04-24
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:RNA genome packaging and capsid assembly of bluetongue virus visualized in host cells.
Cell, 187, 2024
8Z8O
DownloadVisualize
BU of 8z8o by Molmil
norbelladine 4'-O-methyltransferase Y186F complexed with Mg and SAH
Descriptor: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2024-04-22
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8YK2
DownloadVisualize
BU of 8yk2 by Molmil
Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-700
Descriptor: Alpha-galactosidase, GLYCEROL, SODIUM ION, ...
Authors:Kashima, T, Akama, M, Ashida, H, Fushinobu, S.
Deposit date:2024-03-04
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen
J.Appl.Glyosci., 2024
9FA4
DownloadVisualize
BU of 9fa4 by Molmil
Structure of the Integrator arm module containing subunits INTS10/13/14/15 (state 1)
Descriptor: Integrator complex subunit 10, Integrator complex subunit 13, Integrator complex subunit 14, ...
Authors:Razew, M, Galej, W.P.
Deposit date:2024-05-10
Release date:2024-06-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of the Integrator complex assembly and association with transcription factors.
Mol.Cell, 84, 2024
8X5M
DownloadVisualize
BU of 8x5m by Molmil
The Crystal Structure of JNK1 from Biortus.
Descriptor: 1,2-ETHANEDIOL, 3-[4-(dimethylamino)butanoylamino]-~{N}-[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]benzamide, GLYCEROL, ...
Authors:Wang, F, Cheng, W, Yuan, Z, Qi, J, Li, J.
Deposit date:2023-11-17
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of JNK1 from Biortus.
To Be Published
8VR6
DownloadVisualize
BU of 8vr6 by Molmil
crystal structure of the Pcryo_0619 N-acetryltransferase from Psychrobacter cryohalolentis K5 in the presence of CoA-disulfide
Descriptor: Acetyltransferase, putative, [[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-4-[[3-[2-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyldisulfanyl]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate
Authors:Dunsirn, M.M, Bockhaus, N.J, Thoden, J.B, Holden, H.M.
Deposit date:2024-01-20
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biochemical Investigation of the Enzymes Required for the Production of 2,3,4-triacetoamido-2,3,4-trideoxy-l-arabinose in Psychrobacter cryohalolentis K5
To Be Published
8Y4Z
DownloadVisualize
BU of 8y4z by Molmil
Monomeric HERC5 HECT c-lobe structure in solution
Descriptor: E3 ISG15--protein ligase HERC5
Authors:Dag, C, Lambert, M, Kahraman, K, Lohn, F, Lee, W, Gocenler, O, Guntert, P, Dotsch, V.
Deposit date:2024-01-31
Release date:2024-02-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Monomeric HERC5 HECT c-lobe structure in solution
To Be Published
8VIH
DownloadVisualize
BU of 8vih by Molmil
EgtB-IV from Crocosphaera subtropica, an ergothioneine-biosynthetic type IV sulfoxide synthase in complex with hercynine
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, FE (III) ION, ...
Authors:Ireland, K.A, Davis, K.M.
Deposit date:2024-01-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insights into the convergent evolution of type IV sulfoxide synthase EgtB, an ergothioneine-biosynthetic homolog of ovothiol synthase OvoA
Structure, 2024
8VW2
DownloadVisualize
BU of 8vw2 by Molmil
Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (ATP bound)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-01-31
Release date:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of Apo UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli (ATP bound)
To be published
8X7X
DownloadVisualize
BU of 8x7x by Molmil
Crystal structure of SADS-CoV fusion core
Descriptor: CHLORIDE ION, HR1, HR2
Authors:Yan, L.
Deposit date:2023-11-26
Release date:2024-02-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal Structures of Fusion Cores from CCoV-HuPn-2018 and SADS-CoV.
Viruses, 16, 2024
9AVW
DownloadVisualize
BU of 9avw by Molmil
Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
Descriptor: SULFATE ION, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ...
Authors:Michel, M.A, Scutts, S, Komander, D.
Deposit date:2024-03-05
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin
To be published
9EQ0
DownloadVisualize
BU of 9eq0 by Molmil
Crystal structure of human Casein Kinase II subunit alpha (CK2a1) in complex with allosteric ligand FGJG12
Descriptor: Casein kinase II subunit alpha, SULFATE ION, ~{N}-[4-[(3-chloranyl-4-phenyl-phenyl)methylamino]butyl]isoquinoline-5-sulfonamide
Authors:Kraemer, A, Greco, F, Gerninghaus, J, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-03-20
Release date:2024-05-01
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Synthesis and evaluation of chemical linchpins for highly selective CK2 alpha targeting.
Eur.J.Med.Chem., 276, 2024

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon