Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7T0W
DownloadVisualize
BU of 7t0w by Molmil
Complex of GABA-A synaptic receptor with autoimmune antibody Fab115
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab115 Heavy Chain, IgG1, ...
Authors:Noviello, C.M, Hibbs, R.E, Kreye, J, Teng, J, Pruss, H.
Deposit date:2021-11-30
Release date:2022-07-13
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural mechanisms of GABA A receptor autoimmune encephalitis.
Cell, 185, 2022
5NRL
DownloadVisualize
BU of 5nrl by Molmil
Structure of a pre-catalytic spliceosome.
Descriptor: 13 kDa ribonucleoprotein-associated protein, 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component, 66 kDa U4/U6.U5 small nuclear ribonucleoprotein component, ...
Authors:Plaschka, C, Lin, P.-C, Nagai, K.
Deposit date:2017-04-24
Release date:2017-05-31
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structure of a pre-catalytic spliceosome.
Nature, 546, 2017
8XGR
DownloadVisualize
BU of 8xgr by Molmil
ETB-eGt complex bound to endothelin-1
Descriptor: Camelid antibody VHH fragment, Endothelin receptor type B, Endothelin-1, ...
Authors:Oshima, H.S, Sano, F.K, Akasaka, H, Iwama, A, Shihoya, W, Nureki, O.
Deposit date:2023-12-15
Release date:2024-04-03
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Optimizing cryo-EM structural analysis of G i -coupling receptors via engineered G t and Nb35 application.
Biochem.Biophys.Res.Commun., 693, 2024
7JG7
DownloadVisualize
BU of 7jg7 by Molmil
Cryo-EM structure of bedaquiline-free Mycobacterium smegmatis ATP synthase rotational state 3 (backbone model)
Descriptor: ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit a, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021
7W63
DownloadVisualize
BU of 7w63 by Molmil
Crystal structure of minor pilin TcpB from Vibrio cholerae
Descriptor: SULFATE ION, Toxin-coregulated pilus biosynthesis protein B
Authors:Oki, H, Kawahara, K, Iimori, M, Imoto, Y, Maruno, T, Uchiyama, S, Muroga, Y, Yoshida, A, Yoshida, T, Ohkubo, T, Matsuda, S, Iida, T, Nakamura, S.
Deposit date:2021-12-01
Release date:2022-11-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural basis for the toxin-coregulated pilus-dependent secretion of Vibrio cholerae colonization factor.
Sci Adv, 8, 2022
5V7Z
DownloadVisualize
BU of 5v7z by Molmil
SSNMR Structure of the Human RIP1/RIP3 Necrosome
Descriptor: PRO-LEU-VAL-ASN-ILE-TYR-ASN-CYS-SER-GLY-VAL-GLN-VAL-GLY-ASP, THR-ILE-TYR-ASN-SER-THR-GLY-ILE-GLN-ILE-GLY-ALA-TYR-ASN-TYR-MET-GLU-ILE
Authors:Mompean, M, Li, W, Li, J, Laage, S, Siemer, A.B, Wu, H, McDermott, A.E.
Deposit date:2017-03-21
Release date:2018-03-28
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex.
Cell, 173, 2018
5LIE
DownloadVisualize
BU of 5lie by Molmil
Crystal structure of Mycobacterium tuberculosis CYP126A1 in complex with imidazole
Descriptor: IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, Putative cytochrome P450 126
Authors:Levy, C, Munro, A.W, Leys, D.
Deposit date:2016-07-14
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Structural Characterization and Ligand/Inhibitor Identification Provide Functional Insights into the Mycobacterium tuberculosis Cytochrome P450 CYP126A1.
J. Biol. Chem., 292, 2017
7WG3
DownloadVisualize
BU of 7wg3 by Molmil
Structural basis of interleukin-17B receptor in complex with a neutralizing antibody D9 for guiding humanization and affinity maturation for cancer therapy
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of D9 Fab, IL17RB protein, ...
Authors:Lee, W.H, Chen, X.R, Liu, I.J, Lee, J.H, Hu, C.M, Wu, H.C, Wang, S.K, Lee, W.H, Ma, C.
Deposit date:2021-12-28
Release date:2022-11-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural basis of interleukin-17B receptor in complex with a neutralizing antibody for guiding humanization and affinity maturation.
Cell Rep, 41, 2022
3DW9
DownloadVisualize
BU of 3dw9 by Molmil
SgrAI with cognate DNA and manganese bound
Descriptor: DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3'), MANGANESE (II) ION, SgraIR restriction enzyme
Authors:Dunten, P.W, Horton, N.C, Little, E.J.
Deposit date:2008-07-21
Release date:2008-08-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of SgrAI bound to DNA; recognition of an 8 base pair target.
Nucleic Acids Res., 36, 2008
7JH1
DownloadVisualize
BU of 7jh1 by Molmil
Solution structure of a reconstructed XCL1 ancestor
Descriptor: XCL1 ancestor
Authors:Tyler, R.C, Peterson, F.C, Volkman, B.F.
Deposit date:2020-07-20
Release date:2020-12-30
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Evolution of fold switching in a metamorphic protein.
Science, 371, 2021
6Z2L
DownloadVisualize
BU of 6z2l by Molmil
Structure of Plasmodium falciparum P113 bound to antibody P3.2
Descriptor: FAb fragment - VH chain, FAb fragment - VL chain, SULFATE ION, ...
Authors:Campeotto, I, Higgins, K.M.
Deposit date:2020-05-16
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Structure of the Cysteine-Rich Domain of Plasmodium falciparum P113 Identifies the Location of the RH5 Binding Site.
Mbio, 11, 2020
5LFQ
DownloadVisualize
BU of 5lfq by Molmil
Crystal Structure of the Bacterial Proteasome Activator Bpa of Mycobacterium tuberculosis (space group P3)
Descriptor: Bacterial proteasome activator
Authors:Bolten, M, Delley, C.L, Leibundgut, M, Boehringer, D, Ban, N, Weber-Ban, E.
Deposit date:2016-07-04
Release date:2016-11-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.503 Å)
Cite:Structural Analysis of the Bacterial Proteasome Activator Bpa in Complex with the 20S Proteasome.
Structure, 24, 2016
8XMI
DownloadVisualize
BU of 8xmi by Molmil
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Ktr system potassium uptake protein A, Ktr system potassium uptake protein B, ...
Authors:Chang, Y.K, Chiang, W.T, Hu, N.J, Tsai, M.D.
Deposit date:2023-12-27
Release date:2024-04-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis and synergism of ATP and Na + activation in bacterial K + uptake system KtrAB.
Nat Commun, 15, 2024
7JG8
DownloadVisualize
BU of 7jg8 by Molmil
Cryo-EM structure of bedaquiline-saturated Mycobacterium smegmatis ATP synthase rotational state 1 (backbone model)
Descriptor: ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit a, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021
7T0Z
DownloadVisualize
BU of 7t0z by Molmil
Complex of GABA-A synaptic receptor with autoimmune antibody Fab175
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab175 IgG1 heavy chain, ...
Authors:Noviello, C.M, Hibbs, R.E, Kreye, J, Teng, J, Pruss, H.
Deposit date:2021-11-30
Release date:2022-07-13
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural mechanisms of GABA A receptor autoimmune encephalitis.
Cell, 185, 2022
5US5
DownloadVisualize
BU of 5us5 by Molmil
Solution structure of the IreB homodimer
Descriptor: UPF0297 protein EF_1202
Authors:Lytle, B.L, Peterson, F.C, Volkman, B.F, Kristich, C.J, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2017-02-13
Release date:2017-06-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and Dimerization of IreB, a Negative Regulator of Cephalosporin Resistance in Enterococcus faecalis.
J. Mol. Biol., 429, 2017
5NAO
DownloadVisualize
BU of 5nao by Molmil
NMR structure of TLR4 transmembrane domain (624-657) in DPC micelles
Descriptor: Toll-like receptor 4
Authors:Mineev, K.S, Goncharuk, S.A, Goncharuk, M.V, Arseniev, A.S.
Deposit date:2017-02-28
Release date:2018-03-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism.
Sci Rep, 7, 2017
7JGB
DownloadVisualize
BU of 7jgb by Molmil
Cryo-EM structure of bedaquiline-free Mycobacterium smegmatis ATP synthase FO region
Descriptor: ATP synthase subunit a, ATP synthase subunit b, ATP synthase subunit b-delta, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021
5NAM
DownloadVisualize
BU of 5nam by Molmil
NMR structure of TLR4 transmembrane domain (624-670) in DMPG/DHPC bicelles
Descriptor: Toll-like receptor 4
Authors:Mineev, K.S, Goncharuk, S.A, Goncharuk, M.V, Arseniev, A.S.
Deposit date:2017-02-28
Release date:2017-09-06
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism.
Sci Rep, 7, 2017
7HVP
DownloadVisualize
BU of 7hvp by Molmil
X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A COMPLEX BETWEEN A SYNTHETIC PROTEASE OF HUMAN IMMUNODEFICIENCY VIRUS 1 AND A SUBSTRATE-BASED HYDROXYETHYLAMINE INHIBITOR
Descriptor: HIV-1 PROTEASE, INHIBITOR ACE-SER-LEU-ASN-PHE-PSI(CH(OH)-CH2N)-PRO-ILE VME (JG-365)
Authors:Swain, A.L, Miller, M.M, Green, J, Rich, D.H, Schneider, J, Kent, S.B.H, Wlodawer, A.
Deposit date:1990-09-13
Release date:1993-07-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray crystallographic structure of a complex between a synthetic protease of human immunodeficiency virus 1 and a substrate-based hydroxyethylamine inhibitor.
Proc.Natl.Acad.Sci.USA, 87, 1990
7D8K
DownloadVisualize
BU of 7d8k by Molmil
Solution structure of the methyl-CpG binding domain of MBD6 from Arabidopsis thaliana
Descriptor: Methyl-CpG-binding domain-containing protein 6
Authors:Mahana, Y, Ohki, I, Walinda, E, Morimoto, D, Sugase, K, Shirakawa, M.
Deposit date:2020-10-08
Release date:2021-10-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights into Methylated DNA Recognition by the Methyl-CpG Binding Domain of MBD6 from Arabidopsis thaliana .
Acs Omega, 7, 2022
8XMH
DownloadVisualize
BU of 8xmh by Molmil
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Ktr system potassium uptake protein A, Ktr system potassium uptake protein B, ...
Authors:Chang, Y.K, Chiang, W.T, Hu, N.J, Tsai, M.D.
Deposit date:2023-12-27
Release date:2024-04-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural basis and synergism of ATP and Na + activation in bacterial K + uptake system KtrAB.
Nat Commun, 15, 2024
5AKB
DownloadVisualize
BU of 5akb by Molmil
MutS in complex with the N-terminal domain of MutL - crystal form 1
Descriptor: DNA MISMATCH REPAIR PROTEIN MUTL, DNA MISMATCH REPAIR PROTEIN MUTS, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Groothuizen, F.S, Winkler, I, Cristovao, M, Fish, A, Winterwerp, H.H.K, Reumer, A, Marx, A.D, Hermans, N, Nicholls, R.A, Murshudov, G.N, Lebbink, J.H.G, Friedhoff, P, Sixma, T.K.
Deposit date:2015-03-03
Release date:2015-07-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.71 Å)
Cite:MutS/MutL crystal structure reveals that the MutS sliding clamp loads MutL onto DNA.
Elife, 4, 2015
7ZFM
DownloadVisualize
BU of 7zfm by Molmil
Engineered Protein Targeting the Zika Viral Envelope Fusion Loop
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, HEXAETHYLENE GLYCOL, ...
Authors:Athayde, D, Archer, M, Viana, I.F.T, Adan, W.C.S, Xavier, L.S.S, Lins, R.D.
Deposit date:2022-04-01
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.711 Å)
Cite:In Vitro Neutralisation of Zika Virus by an Engineered Protein Targeting the Viral Envelope Fusion Loop
SSRN, 2022
7T8C
DownloadVisualize
BU of 7t8c by Molmil
Heptameric Human Twinkle Helicase Clinical Variant W315L
Descriptor: Twinkle mtDNA helicase
Authors:Riccio, A.A, Bouvette, J, Krahn, J, Borgnia, M.J, Copeland, W.C.
Deposit date:2021-12-16
Release date:2022-07-27
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural insight and characterization of human Twinkle helicase in mitochondrial disease.
Proc.Natl.Acad.Sci.USA, 119, 2022

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon