Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YFV
DownloadVisualize
BU of 6yfv by Molmil
Crystal structure of Mtr4-Red1 minimal complex from Chaetomium thermophilum
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ATP dependent RNA helicase (Dob1)-like protein, Red1, ...
Authors:Dobrev, N, Ahmed, Y.L, Sinning, I.
Deposit date:2020-03-26
Release date:2021-05-05
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The zinc-finger protein Red1 orchestrates MTREC submodules and binds the Mtl1 helicase arch domain.
Nat Commun, 12, 2021
2YIF
DownloadVisualize
BU of 2yif by Molmil
Crystal structure of a F. nucleatum FMN riboswitch - Free state
Descriptor: FMN RIBOSWITCH, MAGNESIUM ION, POTASSIUM ION
Authors:Vicens, Q, Mondragon, E, Batey, R.T.
Deposit date:2011-05-12
Release date:2011-08-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Molecular Sensing by the Aptamer Domain of the Fmn Riboswitch: A General Model for Ligand Binding by Conformational Selection.
Nucleic Acids Res., 39, 2011
5Z3Q
DownloadVisualize
BU of 5z3q by Molmil
Crystal Structure of a Soluble Fragment of Poliovirus 2C ATPase (2.55 Angstrom)
Descriptor: PHOSPHATE ION, PV-2C, ZINC ION
Authors:Guan, H, Tian, J, Zhang, C, Qin, B, Cui, S.
Deposit date:2018-01-08
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.545 Å)
Cite:Crystal structure of a soluble fragment of poliovirus 2CATPase
PLoS Pathog., 14, 2018
6ZDP
DownloadVisualize
BU of 6zdp by Molmil
Structure of telomerase from Candida Tropicalis in complexe with TWJ fragment of telomeric RNA
Descriptor: Chains: B, POTASSIUM ION, Telomerase reverse transcriptase
Authors:Zhai, L, Rety, S, Chen, W.F, Auguin, D, Xi, X.G.
Deposit date:2020-06-15
Release date:2021-04-28
Last modified:2021-05-12
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structures of N-terminally truncated telomerase reverse transcriptase from fungi‡.
Nucleic Acids Res., 49, 2021
4DDN
DownloadVisualize
BU of 4ddn by Molmil
Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Descriptor: Ipomoelin, methyl alpha-D-galactopyranoside
Authors:Chang, W.C, Liu, K.L, Jeng, S.T, Hsu, F.C, Cheng, Y.S.
Deposit date:2012-01-19
Release date:2012-08-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
Plos One, 7, 2012
6WUB
DownloadVisualize
BU of 6wub by Molmil
30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinement
Descriptor: 16S rRNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Jogl, G, Khayat, R.
Deposit date:2020-05-04
Release date:2020-11-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
1D3B
DownloadVisualize
BU of 1d3b by Molmil
CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION
Descriptor: CITRIC ACID, GLYCEROL, PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B), ...
Authors:Kambach, C, Walke, S, Avis, J.M, De La Fortelle, E, Li, J, Nagai, K.
Deposit date:1998-12-22
Release date:1999-12-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs.
Cell(Cambridge,Mass.), 96, 1999
1ZMO
DownloadVisualize
BU of 1zmo by Molmil
Apo structure of haloalcohol dehalogenase HheA of Arthrobacter sp. AD2
Descriptor: halohydrin dehalogenase
Authors:de Jong, R.M, Kalk, K.H, Tang, L, Janssen, D.B, Dijkstra, B.W.
Deposit date:2005-05-10
Release date:2006-04-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The X-ray structure of the haloalcohol dehalogenase HheA from Arthrobacter sp. strain AD2: insight into enantioselectivity and halide binding in the haloalcohol dehalogenase family.
J.Bacteriol., 188, 2006
1RVF
DownloadVisualize
BU of 1rvf by Molmil
FAB COMPLEXED WITH INTACT HUMAN RHINOVIRUS
Descriptor: FAB 17-IA, HUMAN RHINOVIRUS 14 COAT PROTEIN
Authors:Smith, T.J.
Deposit date:1996-09-05
Release date:1998-02-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (4 Å)
Cite:Neutralizing antibody to human rhinovirus 14 penetrates the receptor-binding canyon.
Nature, 383, 1996
3HPI
DownloadVisualize
BU of 3hpi by Molmil
Crystal structure of maltose-binding protein mutant with bound sucrose
Descriptor: ACETATE ION, Maltose-binding periplasmic protein, ZINC ION, ...
Authors:Gould, A.D, Shilton, B.H.
Deposit date:2009-06-04
Release date:2010-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Studies of the maltose transport system reveal a mechanism for coupling ATP hydrolysis to substrate translocation without direct recognition of substrate.
J.Biol.Chem., 285, 2010
4CH0
DownloadVisualize
BU of 4ch0 by Molmil
RRM domain from C. elegans SUP-12
Descriptor: PROTEIN SUP-12, ISOFORM B
Authors:Amrane, S, Mackereth, C.D.
Deposit date:2013-11-27
Release date:2014-09-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Backbone-Independent Nucleic Acid Binding by Splicing Factor Sup-12 Reveals Key Aspects of Molecular Recognition
Nat.Commun., 5, 2014
6KHE
DownloadVisualize
BU of 6khe by Molmil
Crystal structure of CLK2 in complex with CX-4945
Descriptor: 5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid, Dual specificity protein kinase CLK2
Authors:Lee, J.Y, Yun, J.S, Jin, H, Chang, J.H.
Deposit date:2019-07-15
Release date:2019-10-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for the Selective Inhibition of Cdc2-Like Kinases by CX-4945.
Biomed Res Int, 2019, 2019
6KHD
DownloadVisualize
BU of 6khd by Molmil
Crystal structure of CLK1 in complex with CX-4945
Descriptor: 5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid, Dual specificity protein kinase CLK1
Authors:Lee, J.Y, Yun, J.S, Jin, H, Chang, J.H.
Deposit date:2019-07-15
Release date:2019-10-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis for the Selective Inhibition of Cdc2-Like Kinases by CX-4945.
Biomed Res Int, 2019, 2019
5A4K
DownloadVisualize
BU of 5a4k by Molmil
Crystal structure of the R139W variant of human NAD(P)H:quinone oxidoreductase
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, NAD(P)H DEHYDROGENASE [QUINONE] 1
Authors:Lienhart, W.D, Strandback, E, Gudipati, V, Uhl, M.K, Rantase, D.M, Zangger, K, Gruber, K, Macheroux, P.
Deposit date:2015-06-10
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Catalytic competence, structure and stability of the cancer-associated R139W variant of the human NAD(P)H:quinone oxidoreductase 1 (NQO1).
FEBS J., 284, 2017
5HHV
DownloadVisualize
BU of 5hhv by Molmil
Inhibiting complex IL-17A and IL-17RA interactions with a linear peptide
Descriptor: CAT-2000 FAB heavy chain, CAT-2000 FAB light chain, IL-17A peptide inhibitor, ...
Authors:Liu, S.
Deposit date:2016-01-11
Release date:2016-06-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inhibiting complex IL-17A and IL-17RA interactions with a linear peptide.
Sci Rep, 6, 2016
3HY2
DownloadVisualize
BU of 3hy2 by Molmil
Crystal Structure of Sulfiredoxin in Complex with Peroxiredoxin I and ATP:Mg2+
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Peroxiredoxin-1, ...
Authors:Jonsson, T.J, Johnson, L.C, Lowther, W.T.
Deposit date:2009-06-22
Release date:2009-10-06
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein Engineering of the Quaternary Sulfiredoxin-Peroxiredoxin Enzyme-Substrate Complex Reveals the Molecular Basis for Cysteine Sulfinic Acid Phosphorylation
J.Biol.Chem., 284, 2009
1ZJM
DownloadVisualize
BU of 1zjm by Molmil
Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus
Descriptor: 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', 5'-D(P*GP*TP*CP*GP*G)-3', DNA polymerase beta, ...
Authors:Batra, V.K, Beard, W.A, Shock, D.D, Pedersen, L.C, Wilson, S.H.
Deposit date:2005-04-29
Release date:2005-08-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Nucleotide-induced DNA polymerase active site motions accommodating a mutagenic DNA intermediate.
STRUCTURE, 13, 2005
2M4Q
DownloadVisualize
BU of 2m4q by Molmil
NMR structure of E. coli ribosomela decoding site with apramycin
Descriptor: APRAMYCIN, RNA (27-MER)
Authors:Puglisi, J.D, Tsai, A, Marshall, R, Viani, E.
Deposit date:2013-02-10
Release date:2013-03-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The impact of aminoglycosides on the dynamics of translation elongation.
Cell Rep, 3, 2013
2V3J
DownloadVisualize
BU of 2v3j by Molmil
The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase
Descriptor: ESSENTIAL FOR MITOTIC GROWTH 1, SULFATE ION
Authors:Leulliot, N, Bohnsack, M.T, Graille, M, Tollervey, D, Van Tilbeurgh, H.
Deposit date:2007-06-18
Release date:2007-12-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
Nucleic Acids Res., 36, 2008
7EGT
DownloadVisualize
BU of 7egt by Molmil
The crystal structure of the C-terminal domain of T. thermophilus UvrD complexed with the N-terminal domain of UvrB
Descriptor: DNA helicase UvrD, UvrABC system protein B
Authors:Zheng, F, Shen, L, Li, L, Zhang, Y.
Deposit date:2021-03-26
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.581 Å)
Cite:Crucial role and mechanism of transcription-coupled DNA repair in bacteria.
Nature, 604, 2022
6PE4
DownloadVisualize
BU of 6pe4 by Molmil
Yeast Vo motor in complex with 1 VopQ molecule
Descriptor: Cation transporter, Uncharacterized protein YPR170W-B, V-type proton ATPase subunit a, ...
Authors:Peng, W, Li, Y, Tomchick, D.R, Orth, K.
Deposit date:2019-06-20
Release date:2020-05-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A distinct inhibitory mechanism of the V-ATPase by Vibrio VopQ revealed by cryo-EM.
Nat.Struct.Mol.Biol., 27, 2020
4Y6T
DownloadVisualize
BU of 4y6t by Molmil
Structure of Tobacco streak virus coat protein dimer at 2.4 Angstroms resolution
Descriptor: 1,2-ETHANEDIOL, Coat protein
Authors:Gulati, A, Murthy, M.R.N.
Deposit date:2015-02-13
Release date:2016-01-20
Last modified:2016-02-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural studies on tobacco streak virus coat protein: Insights into the pleomorphic nature of ilarviruses
J.Struct.Biol., 193, 2016
4D0N
DownloadVisualize
BU of 4d0n by Molmil
AKAP13 (AKAP-Lbc) RhoGEF domain in complex with RhoA
Descriptor: 1,2-ETHANEDIOL, A-KINASE ANCHOR PROTEIN 13, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Abdul Azeez, K.R, Shrestha, L, Krojer, T, Allerston, C, von Delft, F, Bountra, C, Arrowsmith, C, Edwards, A.M, Knapp, S, Klussmann, E, Elkins, J.M.
Deposit date:2014-04-29
Release date:2014-05-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Crystal Structure of the Rhoa : Akap-Lbc Dh-Ph Domain Complex.
Biochem.J., 464, 2014
6PE5
DownloadVisualize
BU of 6pe5 by Molmil
Yeast Vo motor in complex with 2 VopQ molecules
Descriptor: Cation transporter, Uncharacterized protein YPR170W-B, V-type proton ATPase subunit a, ...
Authors:Peng, W, Li, Y, Tomchick, D.R, Orth, K.
Deposit date:2019-06-20
Release date:2020-05-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A distinct inhibitory mechanism of the V-ATPase by Vibrio VopQ revealed by cryo-EM.
Nat.Struct.Mol.Biol., 27, 2020
6YGU
DownloadVisualize
BU of 6ygu by Molmil
Crystal structure of the minimal Mtr4-Red1 complex (single chain) from Chaetomium thermophilum
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ATP dependent RNA helicase (Dob1)-like protein, ...
Authors:Dobrev, N, Ahmed, Y.L, Sinning, I.
Deposit date:2020-03-27
Release date:2021-05-05
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The zinc-finger protein Red1 orchestrates MTREC submodules and binds the Mtl1 helicase arch domain.
Nat Commun, 12, 2021

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon