Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DVV
DownloadVisualize
BU of 6dvv by Molmil
2.25 Angstrom Resolution Crystal Structure of 6-phospho-alpha-glucosidase from Klebsiella pneumoniae in Complex with NAD and Mn2+.
Descriptor: 6-phospho-alpha-glucosidase, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Minasov, G, Shuvalova, L, Kiryukhina, O, Endres, M, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-06-25
Release date:2018-07-18
Last modified:2023-06-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae.
Microbiol Resour Announc, 12, 2023
2V5I
DownloadVisualize
BU of 2v5i by Molmil
Structure of the receptor-binding protein of bacteriophage Det7: a podoviral tailspike in a myovirus
Descriptor: SALMONELLA TYPHIMURIUM DB7155 BACTERIOPHAGE DET7 TAILSPIKE, SODIUM ION
Authors:Walter, M, Fiedler, C, Grassl, R, Biebl, M, Rachel, R, Hermo-Parrado, X.L, Llamas-Saiz, A.L, Seckler, R, Miller, S, van Raaij, M.J.
Deposit date:2007-07-05
Release date:2008-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the Receptor-Binding Protein of Bacteriophage Det7: A Podoviral Tail Spike in a Myovirus.
J.Virol., 82, 2008
3HM7
DownloadVisualize
BU of 3hm7 by Molmil
Crystal structure of allantoinase from Bacillus halodurans C-125
Descriptor: Allantoinase, ZINC ION
Authors:Patskovsky, Y, Romero, R, Rutter, M, Miller, S, Wasserman, S.R, Sauder, J.M, Raushel, F.M, Burley, S.K, Almo, S.C, New York Structural GenomiX Research Consortium (NYSGXRC), New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-05-28
Release date:2009-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Allantoinase from Bacillus Halodurans
To be Published
2LDO
DownloadVisualize
BU of 2ldo by Molmil
Solution structure of triheme cytochrome PpcA from Geobacter sulfurreducens reveals the structural origin of the redox-Bohr effect
Descriptor: Cytochrome c3, HEME C
Authors:Morgado, L, Paixao, V.B, Bruix, M, Salgueiro, C.A.
Deposit date:2011-05-30
Release date:2011-09-07
Last modified:2021-03-03
Method:SOLUTION NMR
Cite:Revealing the structural origin of the redox-Bohr effect: the first solution structure of a cytochrome from Geobacter sulfurreducens.
Biochem.J., 441, 2012
2PLM
DownloadVisualize
BU of 2plm by Molmil
Crystal structure of the protein TM0936 from Thermotoga maritima complexed with ZN and S-inosylhomocysteine
Descriptor: (2S)-2-AMINO-4-({[(2S,3S,4R,5R)-3,4-DIHYDROXY-5-(6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)TETRAHYDROFURAN-2-YL]METHYL}THIO)BUTANOIC ACID, Uncharacterized protein, ZINC ION
Authors:Fedorov, A.A, Fedorov, E.V, Hermann, J.C, Marti-Arbona, R, Shoichet, B.K, Raushel, F.M, Almo, S.C.
Deposit date:2007-04-20
Release date:2007-07-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based activity prediction for an enzyme of unknown function
Nature, 448, 2007
7BKB
DownloadVisualize
BU of 7bkb by Molmil
Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (hexameric, composite structure)
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CoB--CoM heterodisulfide reductase iron-sulfur subunit A, CoB--CoM heterodisulfide reductase subunit B, ...
Authors:Pfeil-Gardiner, O, Watanabe, T, Shima, S, Murphy, B.J.
Deposit date:2021-01-15
Release date:2021-09-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Science, 373, 2021
7BKC
DownloadVisualize
BU of 7bkc by Molmil
Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (dimeric, composite structure)
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CoB--CoM heterodisulfide reductase iron-sulfur subunit A, CoB--CoM heterodisulfide reductase subunit B, ...
Authors:Pfeil-Gardiner, O, Watanabe, T, Shima, S, Murphy, B.J.
Deposit date:2021-01-15
Release date:2021-09-29
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Science, 373, 2021
2JJP
DownloadVisualize
BU of 2jjp by Molmil
Structure of cytochrome P450 EryK in complex with inhibitor ketoconazole (KC)
Descriptor: 1-ACETYL-4-(4-{[(2S,4R)-2-(2,4-DICHLOROPHENYL)-2-(1H-IMIDAZOL-1-YLMETHYL)-1,3-DIOXOLAN-4-YL]METHOXY}PHENYL)PIPERAZINE, CYTOCHROME P450 113A1, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Savino, C, Sciara, G, Miele, A.E, Kendrew, S.G, Vallone, B.
Deposit date:2008-04-15
Release date:2009-07-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Azole Drugs Trap Cytochrome P450 Eryk in Alternative Conformational States.
Biochemistry, 49, 2010
2PG6
DownloadVisualize
BU of 2pg6 by Molmil
Crystal Structure of Human Microsomal P450 2A6 L240C/N297Q
Descriptor: Cytochrome P450 2A6, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sansen, S, Hsu, M.H, Stout, C.D, Johnson, E.F.
Deposit date:2007-04-06
Release date:2007-07-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structural insight into the altered substrate specificity of human cytochrome P450 2A6 mutants.
Arch.Biochem.Biophys., 464, 2007
2PMQ
DownloadVisualize
BU of 2pmq by Molmil
Crystal structure of a mandelate racemase/muconate lactonizing enzyme from Roseovarius sp. HTCC2601
Descriptor: MAGNESIUM ION, Mandelate racemase/muconate lactonizing enzyme
Authors:Bonanno, J.B, Rutter, M, Bain, K.T, Lau, C, Sridhar, V, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-04-23
Release date:2007-05-08
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Discovery of new enzymes and metabolic pathways by using structure and genome context.
Nature, 502, 2013
3LT5
DownloadVisualize
BU of 3lt5 by Molmil
X-ray Crystallographic structure of a Pseudomonas Aeruginosa Azoreductase in complex with balsalazide
Descriptor: (3E)-3-({4-[(2-carboxyethyl)carbamoyl]phenyl}hydrazono)-6-oxocyclohexa-1,4-diene-1-carboxylic acid, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase 1, ...
Authors:Ryan, A, Laurieri, N, Westwood, I, Wang, C.-J, Lowe, E, Sim, E.
Deposit date:2010-02-15
Release date:2010-05-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Novel Mechanism for Azoreduction
J.Mol.Biol., 400, 2010
6GDF
DownloadVisualize
BU of 6gdf by Molmil
DIHYDROOROTASE FROM AQUIFEX AEOLICUS UNDER 600 BAR OF HYDROSTATIC PRESSURE
Descriptor: Dihydroorotase, SULFATE ION, ZINC ION
Authors:Prange, T, Girard, E, Herve, G, Evans, D.R.
Deposit date:2018-04-23
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pressure-induced activation of latent dihydroorotase from Aquifex aeolicus as revealed by high pressure protein crystallography.
Febs J., 286, 2019
6GEO
DownloadVisualize
BU of 6geo by Molmil
Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP121A1 in complex with Triazole Pyrazole inhibitor 10j
Descriptor: 2-chloranyl-3-[4-(imidazol-1-ylmethyl)-1-phenyl-pyrazol-3-yl]-1~{H}-indole, Mycocyclosin synthase, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Levy, C.W.
Deposit date:2018-04-27
Release date:2019-08-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Design and Synthesis of Imidazole and Triazole Pyrazoles asMycobacterium TuberculosisCYP121A1 Inhibitors.
Chemistryopen, 8, 2019
6GEQ
DownloadVisualize
BU of 6geq by Molmil
Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP121A1 in complex with Triazole Pyrazole inhibitor 14a
Descriptor: 1-phenyl-3-pyridin-4-yl-~{N}-(pyridin-4-ylmethyl)pyrazole-4-carboxamide, Mycocyclosin synthase, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Levy, C.W.
Deposit date:2018-04-27
Release date:2019-08-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Design and Synthesis of Imidazole and Triazole Pyrazoles asMycobacterium TuberculosisCYP121A1 Inhibitors.
Chemistryopen, 8, 2019
5Z21
DownloadVisualize
BU of 5z21 by Molmil
The ternary structure of D-lactate dehydrogenase from Fusobacterium nucleatum with NADH and oxamate
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, D-lactate dehydrogenase, OXAMIC ACID
Authors:Furukawa, N, Miyanaga, A, Nakajima, M, Taguchi, H.
Deposit date:2017-12-28
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Sequential Allosteric Transitions in Tetrameric d-Lactate Dehydrogenases from Three Gram-Negative Bacteria.
Biochemistry, 57, 2018
7E3U
DownloadVisualize
BU of 7e3u by Molmil
Crystal structure of the Pseudomonas aeruginosa dihydropyrimidinase complexed with 5-AU
Descriptor: 5-AMINO-1H-PYRIMIDINE-2,4-DIONE, D-hydantoinase/dihydropyrimidinase, ZINC ION
Authors:Yang, Y.C, Luo, R.H, Huang, Y.H, Huang, C.Y, Lin, E.S.
Deposit date:2021-02-09
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.159 Å)
Cite:Molecular Insights into How the Dimetal Center in Dihydropyrimidinase Can Bind the Thymine Antagonist 5-Aminouracil: A Different Binding Mode from the Anticancer Drug 5-Fluorouracil.
Bioinorg Chem Appl, 2022, 2022
3KTU
DownloadVisualize
BU of 3ktu by Molmil
Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA
Descriptor: CALCIUM ION, DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3'), ...
Authors:Verdine, G.L, Lee, S.M.
Deposit date:2009-11-26
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural investigation of hOGG1 bound to a fluorinated oxoG analog
to be published
2XMN
DownloadVisualize
BU of 2xmn by Molmil
High resolution snapshots of defined TolC open states present an iris- like movement of periplasmic entrance helices
Descriptor: CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, Outer membrane protein TolC
Authors:Pei, X.Y, Koronakis, E, Hughes, C, Koronakis, V.
Deposit date:2010-07-28
Release date:2011-01-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structures of sequential open states in a symmetrical opening transition of the TolC exit duct.
Proc. Natl. Acad. Sci. U.S.A., 108, 2011
2OHO
DownloadVisualize
BU of 2oho by Molmil
Structural Basis for Glutamate Racemase Inhibitor
Descriptor: Glutamate Racemase, SULFATE ION
Authors:Kim, E.E.
Deposit date:2007-01-10
Release date:2007-09-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for glutamate racemase inhibition
J.Mol.Biol., 372, 2007
2JJO
DownloadVisualize
BU of 2jjo by Molmil
Structure of cytochrome P450 EryK in complex with its natural substrate erD
Descriptor: CYTOCHROME P450 113A1, Erythromycin D, PROTOPORPHYRIN IX CONTAINING FE
Authors:Savino, C, Sciara, G, Miele, A.E, Kendrew, S.G, Vallone, B.
Deposit date:2008-04-15
Release date:2009-07-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Investigating the Structural Plasticity of a Cytochrome P450: Three-Dimensional Structures of P450 Eryk and Binding to its Physiological Substrate.
J.Biol.Chem., 284, 2009
2JFU
DownloadVisualize
BU of 2jfu by Molmil
Crystal structure of Enterococcus faecium glutamate racemase in complex with phosphate
Descriptor: GLUTAMATE RACEMASE, PHOSPHATE ION
Authors:Lundqvist, T.
Deposit date:2007-02-04
Release date:2007-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exploitation of Structural and Regulatory Diversity in Glutamate Racemases
Nature, 447, 2007
2PG7
DownloadVisualize
BU of 2pg7 by Molmil
Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
Descriptor: Cytochrome P450 2A6, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sansen, S, Hsu, M.H, Stout, C.D, Johnson, E.F.
Deposit date:2007-04-06
Release date:2007-07-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insight into the altered substrate specificity of human cytochrome P450 2A6 mutants.
Arch.Biochem.Biophys., 464, 2007
3LNP
DownloadVisualize
BU of 3lnp by Molmil
Crystal Structure of Amidohydrolase family Protein OLEI01672_1_465 from Oleispira antarctica
Descriptor: ACETIC ACID, Amidohydrolase family Protein OLEI01672_1_465, CALCIUM ION, ...
Authors:Kim, Y, Kagan, O, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-02-02
Release date:2010-02-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.
Nat Commun, 4, 2013
2YKF
DownloadVisualize
BU of 2ykf by Molmil
Sensor region of a sensor histidine kinase
Descriptor: BROMIDE ION, PROBABLE SENSOR HISTIDINE KINASE PDTAS, SULFATE ION
Authors:Preu, J, Panjikar, S, Morth, P, Jaiswal, R, Karunakar, P, Tucker, P.A.
Deposit date:2011-05-26
Release date:2012-06-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Sensor Region of the Ubiquitous Cytosolic Sensor Kinase, Pdtas, Contains Pas and Gaf Domain Sensing Modules.
J.Struct.Biol., 177, 2012
2JFX
DownloadVisualize
BU of 2jfx by Molmil
Crystal structure of Helicobacter pylori glutamate racemase in complex with D-Glutamate
Descriptor: D-GLUTAMIC ACID, GLUTAMATE RACEMASE
Authors:Xue, Y, Lundqvist, T.
Deposit date:2007-02-06
Release date:2007-07-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Exploitation of Structural and Regulatory Diversity in Glutamate Racemases
Nature, 447, 2007

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon