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7UJL
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BU of 7ujl by Molmil
Bacteriophage Lambda Red-Beta N-terminal domain helical assembly in complex with dsDNA
Descriptor: Complementary DNA, Recombination protein bet, Template DNA
Authors:Newing, T.P, Tolun, G.
Deposit date:2022-03-31
Release date:2022-10-05
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Red beta 177 annealase structure reveals details of oligomerization and lambda Red-mediated homologous DNA recombination
Nat Commun, 13, 2022
5O56
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BU of 5o56 by Molmil
Glycogen Phosphorylase b in complex with 29b
Descriptor: (2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(3-naphthalen-2-yl-1~{H}-1,2,4-triazol-5-yl)oxane-3,4-diol, Glycogen phosphorylase, muscle form, ...
Authors:Solovou, T.G.A, Kyriakis, E, Stravodimos, G.A, Kantsadi, A.L, Chatzileontiadou, D.S, Skamnaki, V.T, Leonidas, D.D.
Deposit date:2017-05-31
Release date:2017-09-27
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Nanomolar Inhibitors of Glycogen Phosphorylase Based on beta-d-Glucosaminyl Heterocycles: A Combined Synthetic, Enzyme Kinetic, and Protein Crystallography Study.
J. Med. Chem., 60, 2017
8DMG
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BU of 8dmg by Molmil
CYP102A1 in Closed Conformation
Descriptor: 6-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfanyl}-1H-benzimidazole, Bifunctional cytochrome P450/NADPH--P450 reductase, FLAVIN MONONUCLEOTIDE, ...
Authors:Su, M, Xu, H.
Deposit date:2022-07-08
Release date:2023-07-19
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Insight into the conformational dynamics of cytochrome P450 CYP102A1 enzyme using Cryo-EM
To Be Published
8EFU
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BU of 8efu by Molmil
a22L prion fibril
Descriptor: Major prion protein
Authors:Hoyt, F, Caughey, B.
Deposit date:2022-09-09
Release date:2022-11-02
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM of prion strains from the same genotype of host identifies conformational determinants.
Plos Pathog., 18, 2022
8BC3
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BU of 8bc3 by Molmil
Cryo-EM Structure of a BmSF-TAL - Sulfofructose Schiff Base Complex
Descriptor: (2~{R},3~{S},4~{S})-2,3,4,6-tetrakis(oxidanyl)hexane-1-sulfonic acid, BmSF-TAL
Authors:Snow, A.J.D, Sharma, M, Blaza, J, Davies, G.J.
Deposit date:2022-10-14
Release date:2023-01-18
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Structure and mechanism of sulfofructose transaldolase, a key enzyme in sulfoquinovose metabolism.
Structure, 31, 2023
8BC4
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BU of 8bc4 by Molmil
Cryo-EM Structure of a BmSF-TAL - Sulfofructose Schiff Base Complex in symmetry group C1
Descriptor: (2~{R},3~{S},4~{S})-2,3,4,6-tetrakis(oxidanyl)hexane-1-sulfonic acid, Transaldolase
Authors:Snow, A.J.D, Sharma, M, Blaza, J, Davies, G.J.
Deposit date:2022-10-14
Release date:2023-01-18
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure and mechanism of sulfofructose transaldolase, a key enzyme in sulfoquinovose metabolism.
Structure, 31, 2023
6JXW
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BU of 6jxw by Molmil
Complex of SUMO2 bound SLS4 from ICP0.
Descriptor: SLS4-SIM from Ubiquitin E3 ligase ICP0, Small ubiquitin-related modifier 2
Authors:Hembram, D.S.S, Negi, H, Shet, D, Das, R.
Deposit date:2019-04-25
Release date:2020-02-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Viral SUMO-Targeted Ubiquitin Ligase ICP0 is Phosphorylated and Activated by Host Kinase Chk2.
J.Mol.Biol., 432, 2020
6OTA
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BU of 6ota by Molmil
THREE-DIMENSIONAL STRUCTURE IN SOLUTION OF THE RIBBON DISULFIDE ISOMER OF THE NICOTINIC ACETYLCHOLINE RECEPTOR ANTAGONIST ALPHA-CONOTOXIN TxIA
Descriptor: Alpha-conotoxin TxIA
Authors:Clark, R.J, Nicke, A.
Deposit date:2019-05-02
Release date:2020-05-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and functional analysis of E. Coli-expressed 4/7 alpha-conotoxin analogues reveals preferential formation of ribbon isomers
To Be Published
6QXF
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BU of 6qxf by Molmil
Cas1-Cas2-Csn2-DNA complex from the Type II-A CRISPR-Cas system
Descriptor: CALCIUM ION, CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, ...
Authors:Wilkinson, M, Drabavicius, G, Silanskas, A, Gasiunas, G, Siksnys, V, Wigley, D.B.
Deposit date:2019-03-07
Release date:2019-05-08
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of the DNA-Bound Spacer Capture Complex of a Type II CRISPR-Cas System.
Mol.Cell, 75, 2019
6QX3
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BU of 6qx3 by Molmil
Influenza A virus (A/NT/60/1968) polymerase Hetermotrimer in complex with 3'5' cRNA promoter and Nb8205
Descriptor: Nb8205, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Carrique, L, Keown, J.R, Fan, H, Fodor, E, Grimes, J.M.
Deposit date:2019-03-07
Release date:2019-09-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structures of influenza A virus RNA polymerase offer insight into viral genome replication.
Nature, 573, 2019
6DDE
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BU of 6dde by Molmil
Mu Opioid Receptor-Gi Protein Complex
Descriptor: DAMGO, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Koehl, A, Hu, H, Maeda, S, Manglik, A, Zhang, Y, Kobilka, B.K, Skiniotis, G, Weis, W.I.
Deposit date:2018-05-10
Release date:2018-06-13
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the mu-opioid receptor-Giprotein complex.
Nature, 558, 2018
6R9G
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BU of 6r9g by Molmil
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2019-04-03
Release date:2020-02-26
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7.
Elife, 9, 2020
6D6A
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BU of 6d6a by Molmil
The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 10
Descriptor: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl benzoate, Transcriptional activator protein LasR
Authors:Dong, S.H, Nair, S.K.
Deposit date:2018-04-20
Release date:2018-08-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR.
Cell Chem Biol, 25, 2018
6R9V
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BU of 6r9v by Molmil
Crystal structure of Pediococcus acidilactici lactate oxidase A94G mutant
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, Putative L-lactate oxidase, ...
Authors:Ashok, Y, Maksimainen, M.M, Lehtio, L.
Deposit date:2019-04-04
Release date:2020-02-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:FMN-dependent oligomerization of putative lactate oxidase from Pediococcus acidilactici.
Plos One, 15, 2020
6RAZ
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BU of 6raz by Molmil
D. melanogaster CMG-DNA, State 2B
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, AT18545p, ...
Authors:Eickhoff, P, Martino, F, Costa, A.
Deposit date:2019-04-08
Release date:2019-09-18
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (4.46 Å)
Cite:Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome.
Cell Rep, 28, 2019
8SCB
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BU of 8scb by Molmil
Terminating ribosome with SRI-41315
Descriptor: (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione, 18S_rRNA, 28S_rRNA, ...
Authors:Yip, M.C.J, Coelho, J.P.L, Oltion, K, Tauton, J, Shao, S.
Deposit date:2023-04-05
Release date:2023-12-27
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:The eRF1 degrader SRI-41315 acts as a molecular glue at the ribosomal decoding center.
Nat.Chem.Biol., 20, 2024
6RAW
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BU of 6raw by Molmil
D. melanogaster CMG-DNA, State 1A
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, AT18545p, ...
Authors:Eickhoff, P, Martino, F, Costa, A.
Deposit date:2019-04-08
Release date:2019-09-11
Last modified:2019-09-18
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome.
Cell Rep, 28, 2019
6OQJ
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BU of 6oqj by Molmil
SOLUTION STRUCTURE OF THE COMPLEX OF MUTANT VEK50[RH1/AA] AND PLASMINOGEN KRINGLE 2
Descriptor: Plasminogen kringle 2, Plasminogen-binding group A streptococcal M-like protein PAM
Authors:Yuan, Y, Castellino, F.J.
Deposit date:2019-04-26
Release date:2019-07-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structural model of the complex of the binding regions of human plasminogen with its M-protein receptor from Streptococcus pyogenes.
J.Struct.Biol., 208, 2019
6RAX
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BU of 6rax by Molmil
D. melanogaster CMG-DNA, State 1B
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, AT18545p, ...
Authors:Eickhoff, P, Martino, F, Costa, A.
Deposit date:2019-04-08
Release date:2019-09-11
Last modified:2019-09-18
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome.
Cell Rep, 28, 2019
6DDF
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BU of 6ddf by Molmil
Mu Opioid Receptor-Gi Protein Complex
Descriptor: DAMGO, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Koehl, A, Hu, H, Maeda, S, Manglik, A, Kobilka, B.K, Skiniotis, G, Weis, W.I.
Deposit date:2018-05-10
Release date:2018-06-13
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the mu-opioid receptor-Giprotein complex.
Nature, 558, 2018
6RAY
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BU of 6ray by Molmil
D. melanogaster CMG-DNA, State 2A
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, AT18545p, ...
Authors:Eickhoff, P, Martino, F, Costa, A.
Deposit date:2019-04-08
Release date:2019-09-11
Last modified:2019-09-18
Method:ELECTRON MICROSCOPY (4.28 Å)
Cite:Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome.
Cell Rep, 28, 2019
6OQK
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BU of 6oqk by Molmil
SOLUTION STRUCTURE OF THE COMPLEX OF MUTANT VEK50[RH2/AA] AND PLASMINOGEN KRINGLE 2
Descriptor: Plasminogen Kringle 2, Plasminogen-binding group A streptococcal M-like protein PAM
Authors:Yuan, Y, Castellino, F.J.
Deposit date:2019-04-26
Release date:2019-07-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structural model of the complex of the binding regions of human plasminogen with its M-protein receptor from Streptococcus pyogenes.
J.Struct.Biol., 208, 2019
6OWR
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BU of 6owr by Molmil
NMR solution structure of YfiD
Descriptor: Autonomous glycyl radical cofactor
Authors:Bowman, S.E.J, Drennan, C.L.
Deposit date:2019-05-10
Release date:2019-07-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure and biochemical characterization of a spare part protein that restores activity to an oxygen-damaged glycyl radical enzyme.
J.Biol.Inorg.Chem., 24, 2019
8SQA
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BU of 8sqa by Molmil
The cryo-EM structure of the EcBAM/EspP(beta8-12) complex
Descriptor: Maltose/maltodextrin-binding periplasmic protein,Autotransporter protein EspP translocator, Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, ...
Authors:Wu, R, Noinaj, N.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:BAM orchestrates OMP biogenesis using a beta-templating mechanism
To Be Published
6RPV
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BU of 6rpv by Molmil
Extremely stable monomeric variant of human cystatin C with single amino acid substitution
Descriptor: Cystatin-C
Authors:Zhukov, I, Rodziewicz-Motowidlo, S, Maszota-Zieleniak, M, Jurczak, P, Kozak, M.
Deposit date:2019-05-14
Release date:2019-07-31
Last modified:2023-06-14
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:NMR and crystallographic structural studies of the extremely stable monomeric variant of human cystatin C with single amino acid substitution.
Febs J., 287, 2020

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PDB entries from 2024-09-04

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