PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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7OYA	Cryo-EM structure of the 1 hpf zebrafish embryo 80S ribosome Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Leesch, F, Lorenzo-Orts, L, Grishkovskaya, I, Kandolf, S, Belacic, K, Meinhart, A, Haselbach, D, Pauli, A. Deposit date: 2021-06-24 Release date: 2022-07-13 Last modified: 2023-02-08 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: A molecular network of conserved factors keeps ribosomes dormant in the egg. Nature, 613, 2023
7OYB	Cryo-EM structure of the 6 hpf zebrafish embryo 80S ribosome Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Leesch, F, Lorenzo-Orts, L, Grishkovskaya, I, Kandolf, S, Belacic, K, Meinhart, A, Haselbach, D, Pauli, A. Deposit date: 2021-06-24 Release date: 2022-07-13 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: A molecular network of conserved factors keeps ribosomes dormant in the egg. Nature, 613, 2023
3LGH	Crystal structure of NikR from Helicobacter pylori with variable Ni site coordination Descriptor: MAGNESIUM ION, NICKEL (II) ION, nickel-responsive regulator Authors: Pozharski, E, St John, F. Deposit date: 2010-01-20 Release date: 2010-09-15 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Holo-Ni(II)HpNikR Is an Asymmetric Tetramer Containing Two Different Nickel-Binding Sites. J.Am.Chem.Soc., 132, 2010
7OYC	Cryo-EM structure of the Xenopus egg 80S ribosome Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Leesch, F, Lorenzo-Orts, L, Grishkovskaya, I, Kandolf, S, Belacic, K, Meinhart, A, Haselbach, D, Pauli, A. Deposit date: 2021-06-24 Release date: 2022-07-20 Last modified: 2023-02-08 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: A molecular network of conserved factors keeps ribosomes dormant in the egg. Nature, 613, 2023
3LA2	Crystal structure of NtcA in complex with 2-oxoglutarate Descriptor: 2-OXOGLUTARIC ACID, Global nitrogen regulator Authors: Zhao, M.X, Jiang, Y.L, He, Y.X, Chen, Y.F, Teng, Y.B, Chen, Y.X, Zhang, C.C, Zhou, C.Z. Deposit date: 2010-01-06 Release date: 2010-07-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural basis for the allosteric control of the global transcription factor NtcA by the nitrogen starvation signal 2-oxoglutarate. Proc.Natl.Acad.Sci.USA, 107, 2010
3LSJ	Crystal structure of DesT in complex with palmitoyl-CoA Descriptor: COENZYME A, DesT, PALMITIC ACID Authors: Miller, D.J, White, S.W. Deposit date: 2010-02-12 Release date: 2010-08-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for the transcriptional regulation of membrane lipid homeostasis. Nat.Struct.Mol.Biol., 17, 2010
3LA3	Crystal structure of NtcA in complex with 2,2-difluoropentanedioic acid Descriptor: 2,2-difluoropentanedioic acid, Global nitrogen regulator Authors: Zhao, M.X, Jiang, Y.L, He, Y.X, Chen, Y.F, Teng, Y.B, Chen, Y.X, Zhang, C.C, Zhou, C.Z. Deposit date: 2010-01-06 Release date: 2010-07-14 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis for the allosteric control of the global transcription factor NtcA by the nitrogen starvation signal 2-oxoglutarate. Proc.Natl.Acad.Sci.USA, 107, 2010
8B3D	Structure of the Pol II-TCR-ELOF1 complex. Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA damage-binding protein 1, ... Authors: Kokic, G, Cramer, P. Deposit date: 2022-09-16 Release date: 2023-09-27 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Structure of the Pol II-TCR-ELOF1 complex. To Be Published
4FT8	E. coli Catabolite Activator Protein with Cobalt and Sulfate Ligands Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, COBALT (II) ION, Catabolite gene activator, ... Authors: Rao, R, Lawson, C.L. Deposit date: 2012-06-27 Release date: 2013-12-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.966 Å) Cite: Structure of catabolite activator protein with cobalt(II) and sulfate. Acta Crystallogr F Struct Biol Commun, 70, 2014
5X21	Crystal structure of Thermus thermophilus transcription initiation complex with GpA and pseudouridimycin (PUM) Descriptor: (1S)-1,4-anhydro-5-[(N-carbamimidoylglycyl-N~2~-hydroxy-L-glutaminyl)amino]-5-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-D-ribitol, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Zhang, Y, Ebright, R. Deposit date: 2017-01-29 Release date: 2017-07-05 Last modified: 2022-10-12 Method: X-RAY DIFFRACTION (3.323 Å) Cite: Antibacterial Nucleoside-Analog Inhibitor of Bacterial RNA Polymerase. Cell, 169, 2017
5X22	Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Zhang, Y, Ebright, R. Deposit date: 2017-01-29 Release date: 2017-07-05 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Antibacterial Nucleoside-Analog Inhibitor of Bacterial RNA Polymerase. Cell, 169, 2017
4V9A	Crystal Structure of the 70S ribosome with tetracycline. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... Authors: Jenner, L, Yusupov, M, Yusupova, G. Deposit date: 2012-07-18 Release date: 2014-07-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.2999 Å) Cite: Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis. Proc.Natl.Acad.Sci.USA, 110, 2013
4U0V	Crystal structure of YvoA from Bacillus subtilis in complex with glucosamine-6-phosphate Descriptor: 1,2-ETHANEDIOL, 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, HTH-type transcriptional repressor YvoA Authors: Fillenberg, S.B, Muller, Y.A. Deposit date: 2014-07-14 Release date: 2015-01-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.051 Å) Cite: Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. Nucleic Acids Res., 43, 2015
4U0W	Crystal structure of YvoA from Bacillus subtilis in complex with N-acetylglucosamine-6-phosphate Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLYCEROL, ... Authors: Fillenberg, S.B, Muller, Y.A. Deposit date: 2014-07-14 Release date: 2015-01-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.001 Å) Cite: Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. Nucleic Acids Res., 43, 2015
8P4F	Structural insights into human co-transcriptional capping - structure 6 Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, DNA (38-MER), ... Authors: Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. Deposit date: 2023-05-20 Release date: 2023-07-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
8THD	Structure of the Saccharomyces cerevisiae clamp unloader Elg1-RFC bound to PCNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, ELG1 isoform 1, MAGNESIUM ION, ... Authors: Zheng, F, Yao, Y.N, Georgescu, R, O'Donnell, M.E, Li, H. Deposit date: 2023-07-14 Release date: 2024-05-22 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Structure of the PCNA unloader Elg1-RFC. Sci Adv, 10, 2024
8THC	Structure of the Saccharomyces cerevisiae clamp unloader Elg1-RFC bound to a cracked PCNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, ELG1 isoform 1, MAGNESIUM ION, ... Authors: Zheng, F, Yao, Y.N, Georgescu, R, O'Donnell, M.E, Li, H. Deposit date: 2023-07-14 Release date: 2024-05-22 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.67 Å) Cite: Structure of the PCNA unloader Elg1-RFC. Sci Adv, 10, 2024
5NL9	Crystal structure of a peroxide stress regulator from Leptospira interrogans Descriptor: POTASSIUM ION, Transcriptional regulator (FUR family), UNKNOWN ATOM OR ION, ... Authors: Saul, F.A, Haouz, A, Picardeau, M, Benaroudj, N. Deposit date: 2017-04-04 Release date: 2017-11-22 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and function of the Leptospira interrogans peroxide stress regulator (PerR), an atypical PerR devoid of a structural metal-binding site. J. Biol. Chem., 293, 2018
8P4E	Structural insights into human co-transcriptional capping - structure 5 Descriptor: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, DNA (26-MER), DNA (35-MER), ... Authors: Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. Deposit date: 2023-05-20 Release date: 2023-07-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
3NXC	Molecular mechanism by which the Escherichia coli nucleoid occlusion factor, SlmA, keeps cytokinesis in check Descriptor: HTH-type protein slmA Authors: Tonthat, N.K, Schumacher, M.A. Deposit date: 2010-07-13 Release date: 2011-02-23 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check. Embo J., 30, 2011
9C57	Reconstituted P400 Subcomplex of the human TIP60 complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, cytoplasmic 1, ... Authors: Yang, Z, Mameri, A, Florez Ariza, A.J, Cote, J, Nogales, E. Deposit date: 2024-06-05 Release date: 2024-08-21 Last modified: 2024-09-11 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Structural insights into the human NuA4/TIP60 acetyltransferase and chromatin remodeling complex. Science, 385, 2024
7XYA	The cryo-EM structure of an AlpA-loading complex Descriptor: AlpA, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wen, A, Feng, Y. Deposit date: 2022-06-01 Release date: 2022-07-20 Last modified: 2022-08-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis of AlpA-dependent transcription antitermination. Nucleic Acids Res., 50, 2022
8GIY	E. coli clamp loader with closed clamp Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... Authors: Oakley, A.J, Xu, Z.-Q, Dixon, N.E. Deposit date: 2023-03-14 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
8GIZ	E. coli clamp loader with open clamp Descriptor: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... Authors: Oakley, A.J, Xu, Z.-Q, Dixon, N.E. Deposit date: 2023-03-14 Release date: 2024-03-27 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
3MEX	Crystal structure of MexR in oxidized state Descriptor: Multidrug resistance operon repressor Authors: Chen, H, Yi, C, Zhang, J, Zhang, W, Yang, C.-G, He, C. Deposit date: 2010-04-01 Release date: 2010-07-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural insight into the oxidation-sensing mechanism of the antibiotic resistance of regulator MexR Embo Rep., 11, 2010

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