Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8EQX
DownloadVisualize
BU of 8eqx by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 21
Descriptor: (2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[6-({[(5M)-3-methyl-5-(1H-pyrrol-2-yl)phenyl]amino}methyl)pyridin-2-yl]methyl}piperidine-3,4,5-triol, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chaetomium alpha glucosidase, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-10-10
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
8EFG
DownloadVisualize
BU of 8efg by Molmil
Crystal structure of human TATDN1 bound to dAMP and two zinc ions
Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, ADENINE, ...
Authors:Dorival, J, Eichman, B.F.
Deposit date:2022-09-08
Release date:2023-02-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Human and bacterial TatD enzymes exhibit apurinic/apyrimidinic (AP) endonuclease activity.
Nucleic Acids Res., 51, 2023
4F9V
DownloadVisualize
BU of 4f9v by Molmil
Structure of C113A/C136A mutant variant of glycosylated glutaminyl cyclase from Drosophila melanogaster
Descriptor: 1-(3,4-dimethoxyphenyl)-3-[3-(1H-imidazol-1-yl)propyl]thiourea, CG32412, DI(HYDROXYETHYL)ETHER, ...
Authors:Kolenko, P, Koch, B, Ruiz-Carilo, D, Stubbs, M.T.
Deposit date:2012-05-21
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Glutaminyl Cyclases (QCs) from Drosophila melanogaster Reveal Active Site Conservation between Insect and Mammalian QCs.
Biochemistry, 51, 2012
8ETL
DownloadVisualize
BU of 8etl by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 24
Descriptor: (1S,2S,3R,4S,5S)-5-(butylamino)-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Chaetomium alpha glucosidase, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-10-17
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
3UC3
DownloadVisualize
BU of 3uc3 by Molmil
The crystal structure of Snf1-related kinase 2.3
Descriptor: COBALT (II) ION, Serine/threonine-protein kinase SRK2I
Authors:Zhou, X.E, Ng, L.-M, Soon, F.-F, Kovach, A, Suino-Powell, K.M, Li, J, Melcher, K, Xu, H.E.
Deposit date:2011-10-25
Release date:2011-12-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for basal activity and autoactivation of abscisic acid (ABA) signaling SnRK2 kinases.
Proc.Natl.Acad.Sci.USA, 108, 2011
4FAJ
DownloadVisualize
BU of 4faj by Molmil
Structure and mode of peptide binding of pheromone receptor PrgZ
Descriptor: GLYCEROL, PrgZ, Sex pheromone cCF10, ...
Authors:Berntsson, R.P.-A, Schuurman-Wolters, G.K, Dunny, K, Slotboom, D.J, Poolman, B.
Deposit date:2012-05-22
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and Mode of Peptide Binding of Pheromone Receptor PrgZ.
J.Biol.Chem., 287, 2012
3UPP
DownloadVisualize
BU of 3upp by Molmil
Structure of penicillin-binding protein A from M. tuberculosis: ceftrixaone acyl-enzyme complex
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Davies, C, Fedorovich, A.
Deposit date:2011-11-18
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The role of the beta5-alpha11 loop in the active-site dynamics of acylated penicillin-binding protein A from Mycobacterium tuberculosis
J.Mol.Biol., 418, 2012
3UCC
DownloadVisualize
BU of 3ucc by Molmil
Asymmetric complex of human neuron specific enolase-1-PGA/PEP
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-PHOSPHOGLYCERIC ACID, Gamma-enolase, ...
Authors:Qin, J, Chai, G, Brewer, J, Lovelace, L, Lebioda, L.
Deposit date:2011-10-26
Release date:2012-08-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of asymmetric complexes of human neuron specific enolase with resolved substrate and product and an analogous complex with two inhibitors indicate subunit interaction and inhibitor cooperativity.
J.Inorg.Biochem., 111, 2012
8ETO
DownloadVisualize
BU of 8eto by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 25
Descriptor: (1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-{[(5Z)-6-{[2-nitro-4-(2H-1,2,3-triazol-2-yl)phenyl]amino}hex-5-en-1-yl]amino}cyclohexane-1,2,3,4-tetrol, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-10-17
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
4FB0
DownloadVisualize
BU of 4fb0 by Molmil
Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
Authors:Marcia, M, Pyle, A.M.
Deposit date:2012-05-22
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FBI
DownloadVisualize
BU of 4fbi by Molmil
Crystal Structure of an R46A mutant of the Restriction-Modification Controller Protein C.Esp1396I (Trigonal Form)
Descriptor: GLYCEROL, Regulatory protein
Authors:Martin, R.N.A, McGeehan, J.E, Kneale, G.G.
Deposit date:2012-05-23
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.
Plos One, 9, 2014
4FC6
DownloadVisualize
BU of 4fc6 by Molmil
Studies on DCR shed new light on peroxisomal beta-oxidation: Crystal structure of the ternary complex of pDCR
Descriptor: HEXANOYL-COENZYME A, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Peroxisomal 2,4-dienoyl-CoA reductase
Authors:Hua, T, Wu, D, Wang, J, Shaw, N, Liu, Z.-J.
Deposit date:2012-05-24
Release date:2012-07-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Studies of human 2,4-dienoyl CoA reductase shed new light on peroxisomal beta-oxidation of unsaturated fatty acids
J.Biol.Chem., 287, 2012
8EUR
DownloadVisualize
BU of 8eur by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 26
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-{[2-nitro-4-(triazan-1-yl)phenyl]amino}ethyl (2-{[(1S,2S,3R,4S,5S)-2,3,4,5-tetrahydroxy-5-(hydroxymethyl)cyclohexyl]amino}ethyl)carbamate, Chaetomium alpha glucosidase, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-10-19
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
8EUT
DownloadVisualize
BU of 8eut by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 27
Descriptor: (2R,3R,4R,5S)-1-[8-(furan-2-yl)octyl]-2-(hydroxymethyl)piperidine-3,4,5-triol, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-10-19
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
4FCP
DownloadVisualize
BU of 4fcp by Molmil
Targetting conserved water molecules: Design of 4-aryl-5-cyanopyrrolo [2,3-d] pyrimidine Hsp90 inhibitors using fragment-based screening and structure-based optimization
Descriptor: Heat shock protein HSP 90-alpha, N,N-dimethyl-7H-purin-6-amine
Authors:Davies, N.G.M, Browne, H, Davies, B, Foloppe, N, Geoffrey, S, Gibbons, B, Hart, T, Drysdale, M, Mansell, H, Massey, A, Matassova, N, Moore, J.D, Murray, J, Pratt, R, Ray, S, Roughley, S.D, Jensen, M.R, Schoepfer, J, Scriven, K, Simmonite, H, Stokes, S, Surgenor, A, Webb, P, Wright, L, Brough, P.
Deposit date:2012-05-25
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Targeting conserved water molecules: Design of 4-aryl-5-cyanopyrrolo[2,3-d]pyrimidine Hsp90 inhibitors using fragment-based screening and structure-based optimization.
Bioorg.Med.Chem., 20, 2012
3URE
DownloadVisualize
BU of 3ure by Molmil
Repack mutant (T181I, W199L, Q210I) of alpha-Lytic Protease
Descriptor: Alpha-lytic protease, SULFATE ION
Authors:Kelch, B.A, Agard, D.A.
Deposit date:2011-11-22
Release date:2012-05-23
Last modified:2012-07-18
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Functional modulation of a protein folding landscape via side-chain distortion.
Proc.Natl.Acad.Sci.USA, 109, 2012
4FC7
DownloadVisualize
BU of 4fc7 by Molmil
Studies on DCR shed new light on peroxisomal beta-oxidation: Crystal structure of the ternary complex of pDCR
Descriptor: COENZYME A, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Peroxisomal 2,4-dienoyl-CoA reductase
Authors:Hua, T, Wu, D, Wang, J, Shaw, N, Liu, Z.-J.
Deposit date:2012-05-24
Release date:2012-07-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Studies of human 2,4-dienoyl CoA reductase shed new light on peroxisomal beta-oxidation of unsaturated fatty acids
J.Biol.Chem., 287, 2012
4FD5
DownloadVisualize
BU of 4fd5 by Molmil
Crystal structure of arylalkylamine N-Acetyltransferase 2 from Aedes aegypti
Descriptor: IODIDE ION, arylalkylamine N-Acetyltransferase 2
Authors:Han, Q, Robinson, R, Li, J.
Deposit date:2012-05-26
Release date:2012-06-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Evolution of insect arylalkylamine N-acetyltransferases: structural evidence from the yellow fever mosquito, Aedes aegypti.
Proc.Natl.Acad.Sci.USA, 109, 2012
8EUX
DownloadVisualize
BU of 8eux by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 28
Descriptor: (2R,3R,4R,5S)-2-(hydroxymethyl)-1-{5-[4-(2-methoxyethyl)phenyl]pentyl}piperidine-3,4,5-triol, 2-acetamido-2-deoxy-beta-D-glucopyranose, Chaetomium alpha glucosidase, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-10-19
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
8EPR
DownloadVisualize
BU of 8epr by Molmil
Co-crystal structure of Chaetomium glucosidase with compound 19
Descriptor: (2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[3-({[(5M)-3-(methanesulfonyl)-5-(pyridazin-3-yl)phenyl]amino}methyl)phenyl]methyl}piperidine-3,4,5-triol, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Karade, S.S, Mariuzza, R.A.
Deposit date:2022-10-06
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum alpha-Glucosidase I with Anti-SARS-CoV-2 Activity.
J.Med.Chem., 66, 2023
6XDF
DownloadVisualize
BU of 6xdf by Molmil
Crystal structure of IRE1a in complex with G-4100
Descriptor: 4-amino-N-(6-chloro-2-fluoro-3-{[(pyrrolidin-1-yl)sulfonyl]amino}phenyl)quinazoline-8-carboxamide, SODIUM ION, Serine/threonine-protein kinase/endoribonuclease IRE1
Authors:Steinbacher, S, Wang, W.
Deposit date:2020-06-10
Release date:2021-04-21
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Identification of BRaf-Sparing Amino-Thienopyrimidines with Potent IRE1 alpha Inhibitory Activity.
Acs Med.Chem.Lett., 11, 2020
4FCN
DownloadVisualize
BU of 4fcn by Molmil
The crystal structures of several mutants of pleurotus eryngii versatile peroxidase
Descriptor: CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Mate, M.J, Romero, A, Ruiz-Duenas, F.J, Martinez, A.T.
Deposit date:2012-05-25
Release date:2012-10-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two Oxidation Sites for Low Redox Potential Substrates: A DIRECTED MUTAGENESIS, KINETIC, AND CRYSTALLOGRAPHIC STUDY ON PLEUROTUS ERYNGII VERSATILE PEROXIDASE.
J.Biol.Chem., 287, 2012
4FDC
DownloadVisualize
BU of 4fdc by Molmil
Crystal structure of the E493V mutant of human apoptosis inducing factor (AIF)
Descriptor: Apoptosis-inducing factor 1, mitochondrial, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Sevrioukova, I.F.
Deposit date:2012-05-27
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cowchock syndrome is associated with a mutation in apoptosis-inducing factor.
Am.J.Hum.Genet., 91, 2012
3UGK
DownloadVisualize
BU of 3ugk by Molmil
Crystal Structure of C205S mutant and Saccharopine Dehydrogenase from Saccharomyces cerevisiae.
Descriptor: Saccharopine dehydrogenase [NAD+, L-lysine-forming]
Authors:Cook, P.F, Kumar, V.P, Thomas, L.M, West, A.H, Bobyk, K.D.
Deposit date:2011-11-02
Release date:2012-02-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Evidence in Support of Lysine 77 and Histidine 96 as Acid-Base Catalytic Residues in Saccharopine Dehydrogenase from Saccharomyces cerevisiae.
Biochemistry, 51, 2012
4FD9
DownloadVisualize
BU of 4fd9 by Molmil
Crystal structure of the third beta-gamma-crystallin domain of Crybg3 (betagamma-crystallin domain-containing protein 3) from Mus musculus
Descriptor: Beta/gamma crystallin domain-containing protein 3
Authors:Aravind, P, Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2012-05-26
Release date:2013-04-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Aggregation-prone near-native intermediate formation during unfolding of a structurally similar nonlenticular beta/gamma-crystallin domain
Biochemistry, 51, 2012

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon