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100D	CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING Descriptor: DNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3'), SPERMINE Authors: Ban, C, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1994-12-05 Release date: 1995-03-31 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing. Nucleic Acids Res., 22, 1994
8XT0	Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline Descriptor: 12s rRNA, 16s rRNA, 39S ribosomal protein L22, ... Authors: Li, X, Wang, M, Cheng, J. Deposit date: 2024-01-10 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
6AIE	Crystal structure of a new form of RsmD-like RNA methyl transferase from Mycobacterium tuberculosis determined at 1.74 A resolution Descriptor: Putative methyltransferase Authors: Venkataraman, S, Dhankar, A, Sinha, K.M, Manivasakan, P, Iqbal, N, Singh, T.P, Prasad, B.V.L.S. Deposit date: 2018-08-22 Release date: 2018-09-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Crystal structure of a new form of RsmD-like RNA methyl transferase from Mycobacterium tuberculosis determined at 1.74 A resolution To Be Published
4E19	Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 Descriptor: MANGANESE (II) ION, ribonuclease H1 Authors: You, D.J, Angkawidjaja, C, Koga, Y, Kanaya, S. Deposit date: 2012-03-06 Release date: 2013-03-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.41 Å) Cite: Crystal structure of RNase H1 from halophilic archaeon Halobacterium salinarum NRC-1 To be Published
6M2B	Crystal structure of human dihydroorotate dehydrogenase (DHODH) with S416 Descriptor: 2-[(E)-[[4-(2-chlorophenyl)-1,3-thiazol-2-yl]-methyl-hydrazinylidene]methyl]benzoic acid, Dihydroorotate dehydrogenase (quinone), mitochondrial, ... Authors: Zhu, L, Li, H. Deposit date: 2020-02-27 Release date: 2021-03-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Novel and potent inhibitors targeting DHODH are broad-spectrum antivirals against RNA viruses including newly-emerged coronavirus SARS-CoV-2. Protein Cell, 11, 2020
2DPC	Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine Descriptor: (6-AMINOHEXYL)CARBAMIC ACID, COBALT (II) ION, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3'), ... Authors: Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 2006-05-08 Release date: 2007-04-17 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules Nucleic Acids Res., 35, 2007
2DPB	Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine Descriptor: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), POTASSIUM ION Authors: Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 2006-05-08 Release date: 2007-04-17 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules Nucleic Acids Res., 35, 2007
2DP7	Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine Descriptor: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, ... Authors: Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 2006-05-08 Release date: 2007-04-17 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules Nucleic Acids Res., 35, 2007
4QJD	Crystal Structure of Twister with the Nucleotide 5'- to the Cleavage Site Disordered at 3.1 A Resolution Descriptor: MAGNESIUM ION, Twister RNA sequence Authors: Eiler, D.R, Wang, J, Steitz, T.A. Deposit date: 2014-06-03 Release date: 2014-09-03 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural basis for the fast self-cleavage reaction catalyzed by the twister ribozyme. Proc.Natl.Acad.Sci.USA, 111, 2014
6N34	Crystal structure of the BTB domain of Human NS1-BP Descriptor: Influenza virus NS1A-binding protein Authors: Zhang, K, Shang, G, Padavannil, A, Fontoura, B, Chook, Y.M. Deposit date: 2018-11-14 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural-functional interactions of NS1-BP protein with the splicing and mRNA export machineries for viral and host gene expression. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6N3H	Crystal structure of Kelch domain of the human NS1 binding protein Descriptor: Influenza virus NS1A-binding protein Authors: Zhang, K, Shang, G, Padavannil, A, Fontoura, B.M.A, Chook, Y.M. Deposit date: 2018-11-15 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural-functional interactions of NS1-BP protein with the splicing and mRNA export machineries for viral and host gene expression. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1XYE	T-to-THigh Transitions in Human Hemoglobin: alpha Y42A deoxy low salt Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE Authors: Kavanaugh, J.S, Rogers, P.H, Arnone, A, Hui, H.L, Wierzba, A, DeYoung, A, Kwiatkowski, L.D, Noble, R.W, Juszczak, L.J, Peterson, E.S, Friedman, J.M. Deposit date: 2004-11-09 Release date: 2004-11-30 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Intersubunit interactions associated with tyr42alpha stabilize the quaternary-T tetramer but are not major quaternary constraints in deoxyhemoglobin Biochemistry, 44, 2005
1XZ2	wild-type hemoglobin deoxy no-salt Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE Authors: Kavanaugh, J.S, Rogers, P.H, Arnone, A, Hui, H.L, Wierzba, A, DeYoung, A, Kwiatkowski, L.D, Noble, R.W, Juszczak, L.J, Peterson, E.S, Friedman, J.M. Deposit date: 2004-11-11 Release date: 2004-11-30 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Intersubunit interactions associated with tyr42alpha stabilize the quaternary-T tetramer but are not major quaternary constraints in deoxyhemoglobin Biochemistry, 44, 2005
5UI7	Solution NMR Structure of Lasso Peptide Klebsidin Descriptor: Klebsidin Authors: Bushin, L.B, Metelev, M, Severinov, K, Seyedsayamdost, M.R. Deposit date: 2017-01-13 Release date: 2017-02-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae. ACS Chem. Biol., 12, 2017
5UI6	Solution NMR Structure of Lasso Peptide Acinetodin Descriptor: Acinetodin Authors: Bushin, L.B, Metelev, M, Severinov, K, Seyedsayamdost, M.R. Deposit date: 2017-01-12 Release date: 2017-02-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae. ACS Chem. Biol., 12, 2017
8H0L	Sulfur binding domain of Hga complexed with phosphorothioated DNA Descriptor: DNA (5'-D(*CP*GP*AP*GP*(PST)P*TP*CP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*GP*AP*AP*CP*TP*CP*G)-3'), MAGNESIUM ION, ... Authors: Liu, G, He, X, Hu, W, Yang, B, Xiao, Q. Deposit date: 2022-09-29 Release date: 2023-09-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Characterization of a promiscuous DNA sulfur binding domain and application in site-directed RNA base editing. Nucleic Acids Res., 51, 2023
6TY0	NT PART CRYSTAL STRUCTURE OF THE RYMV-ENCODED VIRAL RNA SILENCING SUPPRESSOR P1 Descriptor: ZINC ION, p1 Authors: Vignols, F, Hoh, F. Deposit date: 2020-01-15 Release date: 2021-01-27 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A Flexible and Original Architecture of Two Unrelated Zinc Fingers Underlies the Role of the Multitask P1 in RYMV Spread. J.Mol.Biol., 434, 2022
3BI3	X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactors Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3'), ... Authors: Yi, C, Yang, C.-G. Deposit date: 2007-11-29 Release date: 2008-04-22 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature, 452, 2008
6TY2	CT PART CRYSTAL STRUCTURE OF THE RYMV-ENCODED VIRAL RNA SILENCING SUPPRESSOR P1 Descriptor: ZINC ION, p1 Authors: Vignols, F, Hoh, F. Deposit date: 2020-01-15 Release date: 2021-01-27 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.98 Å) Cite: A Flexible and Original Architecture of Two Unrelated Zinc Fingers Underlies the Role of the Multitask P1 in RYMV Spread. J.Mol.Biol., 434, 2022
3BIE	X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KG Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(*DAP*DAP*DCP*DGP*DGP*DTP*DTP*DTP*DTP*DAP*DCP*DCP*DT)-3'), ... Authors: Yi, C, Yang, C.-G. Deposit date: 2007-11-30 Release date: 2008-04-22 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA Nature, 452, 2008
2HAL	An episulfide cation (thiiranium ring) trapped in the active site of HAV 3C proteinase inactivated by peptide-based ketone inhibitors Descriptor: Hepatitis A Protease 3C, N-ACETYL-LEUCYL-PHENYLALANYL-PHENYLALANYL-GLUTAMATE-FLUOROMETHYLKETONE INHIBITOR, N-[(BENZYLOXY)CARBONYL]-L-ALANINE Authors: Yin, J, Cherney, M.M, Bergmann, E.M, James, M.N. Deposit date: 2006-06-13 Release date: 2006-08-08 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.35 Å) Cite: An Episulfide Cation (Thiiranium Ring) Trapped in the Active Site of HAV 3C Proteinase Inactivated by Peptide-based Ketone Inhibitors. J.Mol.Biol., 361, 2006
3BZK	Crystal Structure of the Tex protein from Pseudomonas aeruginosa, crystal form 2 Descriptor: Tex Authors: Johnson, S.J, Close, D, Hill, C.P. Deposit date: 2008-01-18 Release date: 2008-04-08 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure and RNA binding of the Tex protein from Pseudomonas aeruginosa. J.Mol.Biol., 377, 2008
2DYD	Solution structure of the PABC domain from Triticum aevestium poly(A)-binding protein Descriptor: Poly(A)-binding protein Authors: Siddiqui, N. Deposit date: 2006-09-10 Release date: 2007-05-22 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the PABC domain from wheat poly (A)-binding protein: an insight into RNA metabolic and translational control in plants Biochemistry, 46, 2007
3LCV	Crystal Structure of Antibiotic related Methyltransferase Descriptor: S-ADENOSYLMETHIONINE, Sisomicin-gentamicin resistance methylase Sgm Authors: Sivaraman, J, Husain, N. Deposit date: 2010-01-11 Release date: 2010-06-02 Last modified: 2017-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases. Nucleic Acids Res., 2010
3BKZ	X-ray structure of E coli AlkB crosslinked to dsDNA in the active site Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3'), ... Authors: Yi, C, Yang, C.-G, He, C. Deposit date: 2007-12-09 Release date: 2008-04-22 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA Nature, 452, 2008

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