PDB: 48855 resultsInfo pagesStatus searchChemie searchBIRD

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4GOP	Structure and Conformational Change of a Replication Protein A Heterotrimer Bound to ssDNA Descriptor: DNA (25-MER), Putative uncharacterized protein, ZINC ION Authors: Pavletich, N.P, Jie, F. Deposit date: 2012-08-20 Release date: 2012-11-28 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure and conformational change of a replication protein A heterotrimer bound to ssDNA. Genes Dev., 26, 2012
1JB7	DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', CHLORIDE ION, SODIUM ION, ... Authors: Horvath, M.P, Schultz, S.C. Deposit date: 2001-06-02 Release date: 2001-06-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.86 Å) Cite: DNA G-quartets in a 1.86 A resolution structure of an Oxytricha nova telomeric protein-DNA complex. J.Mol.Biol., 310, 2001
4QTK	Complex of WOPR domain of Wor1 in Candida albicans with the 17bp dsDNA Descriptor: DNA (5'-D(*AP*AP*GP*TP*TP*AP*AP*AP*CP*TP*TP*TP*TP*TP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*AP*AP*CP*TP*T)-3'), White-opaque regulator 1 Authors: Zhang, S, Zhang, T, Ding, J. Deposit date: 2014-07-08 Release date: 2014-08-13 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Crystal structure of the WOPR-DNA complex and implications for Wor1 function in white-opaque switching of Candida albicans. Cell Res., 24, 2014
3K75	X-ray crystal structure of reduced XRCC1 bound to DNA pol beta catalytic domain Descriptor: DNA polymerase beta, DNA repair protein XRCC1 Authors: Cuneo, M.J, London, R.E. Deposit date: 2009-10-12 Release date: 2010-04-28 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Oxidation state of the XRCC1 N-terminal domain regulates DNA polymerase beta binding affinity. Proc.Natl.Acad.Sci.USA, 107, 2010
3WU1	Crystal structure of the ETS1-RUNX1-DNA ternary complex Descriptor: DNA (5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3'), Protein C-ets-1, ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2014-04-21 Release date: 2014-08-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions. J.Mol.Biol., 427, 2015
8DR4	Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) without NTD Descriptor: DNA (5'-D(P*AP*AP*GP*GP*GP*GP*GP*GP*GP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*TP*TP*T)-3'), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-17 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.45 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DR3	Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) with NTD Descriptor: DNA (5'-D(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*TP*TP*T)-3'), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*AP*GP*GP*GP*GP*GP*GP*GP*GP*GP*A)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-17 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DR1	Consensus closed state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) Descriptor: DNA (5'-D(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*TP*TP*T)-3'), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*AP*GP*GP*GP*GP*GP*GP*GP*GP*GP*A)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-17 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.14 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DR5	Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) with NTD Descriptor: DNA (5'-D(P*AP*GP*GP*GP*GP*GP*GP*GP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*TP*TP*T)-3'), DNA (5'-D(P*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-17 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
1HRY	THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID-DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR Descriptor: DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3'), DNA (5'-D(*GP*TP*TP*TP*GP*TP*GP*C)-3'), HUMAN SRY Authors: Clore, G.M, Werner, M.H, Huth, J.R, Gronenborn, A.M. Deposit date: 1995-05-09 Release date: 1995-09-15 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell(Cambridge,Mass.), 81, 1995
131D	THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SODIUM ION, SPERMINE Authors: Bancroft, D, Williams, L.D, Rich, A, Egli, M. Deposit date: 1993-06-18 Release date: 1993-10-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1 Å) Cite: The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove. Biochemistry, 33, 1994
145D	Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) Descriptor: DNA (5'-D(*(5CM)P*DGP*DGP*DGP*(5CM)P*DG)-3'), DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3'), DNA (5'-D(*(MCY)P*GP*GP*GP*(5CM)P*G)-3') Authors: Schroth, G.P, Kagawa, T.F, Shing Ho, P. Deposit date: 1993-11-11 Release date: 1994-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Structure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG). Biochemistry, 32, 1993
1A31	HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*5IUP*5IU*TP*GP*AP*AP*AP*AP*AP*5IUP*5IUP*5IUP*5IUP*T)-3'), DNA (5'-D(*AP*AP*AP*AP*AP*TP*5IUP*5IUP*5IUP*5IUP*CP*AP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3'), PROTEIN (TOPOISOMERASE I) Authors: Redinbo, M.R, Stewart, L, Kuhn, P, Champoux, J.J, Hol, W.G.J. Deposit date: 1998-01-27 Release date: 1998-08-28 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science, 279, 1998
1WID	Solution Structure of the B3 DNA-Binding Domain of RAV1 Descriptor: DNA-binding protein RAV1 Authors: Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-28 Release date: 2004-11-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1 Plant Cell, 16, 2004
181D	SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) Descriptor: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') Authors: Sadasivan, C, Gautham, N. Deposit date: 1994-07-22 Release date: 1995-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). J.Mol.Biol., 248, 1995
180D	SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) Descriptor: DNA (5'-D(*CP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*GP*CP*G)-3') Authors: Sadasivan, C, Gautham, N. Deposit date: 1994-07-19 Release date: 1995-07-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). J.Mol.Biol., 248, 1995
187D	HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION Descriptor: DNA (5'-D(*CP*CP*CP*CP*GP*GP*GP*G)-3') Authors: Eisenstein, M, Shakked, Z. Deposit date: 1994-09-02 Release date: 1995-02-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. J.Mol.Biol., 248, 1995
3E54	Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA Descriptor: DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3'), ... Authors: Nomura, N, Nomura, Y, Sussman, D, Stoddard, B.L. Deposit date: 2008-08-13 Release date: 2008-12-30 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases Nucleic Acids Res., 36, 2008
1A35	HUMAN TOPOISOMERASE I/DNA COMPLEX Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*AP*(BRU)P*(BRU)P*TP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*AP*AP*TP*+UP*+UP*+UP*+UP*CP*+UP*AP*AP*GP*TP*CP*TP*TP*TP*+ UP*T)-3'), PROTEIN (DNA TOPOISOMERASE I) Authors: Redinbo, M.R, Stewart, L, Kuhn, P, Champoux, J.J, Hol, W.G. Deposit date: 1998-01-29 Release date: 1998-08-28 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science, 279, 1998
5LEW	DNA polymerase Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA polymerase III subunit alpha, SULFATE ION, ... Authors: Banos-Mateos, S, Lang, U.F, Maslen, S.L, Skehel, J.M, Lamers, M.H. Deposit date: 2016-06-30 Release date: 2017-10-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: High-fidelity DNA replication in Mycobacterium tuberculosis relies on a trinuclear zinc center. Nat Commun, 8, 2017
1APL	CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS Descriptor: DNA (5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*C P*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3'), PROTEIN (MAT-ALPHA2 HOMEODOMAIN) Authors: Wolberger, C, Vershon, A.K, Liu, B, Johnson, A.D, Pabo, C.O. Deposit date: 1993-10-04 Release date: 1993-10-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions. Cell(Cambridge,Mass.), 67, 1991
1BNA	STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Drew, H.R, Wing, R.M, Takano, T, Broka, C, Tanaka, S, Itakura, K, Dickerson, R.E. Deposit date: 1981-01-26 Release date: 1981-05-21 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of a B-DNA dodecamer: conformation and dynamics. Proc.Natl.Acad.Sci.USA, 78, 1981
9EOA	Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA Descriptor: DNA (continuous), DNA (post-nick), DNA (pre-nick), ... Authors: Jeyasankar, G, Salerno-Kochan, A, Thomsen, M. Deposit date: 2024-03-14 Release date: 2025-01-29 Last modified: 2025-05-28 Method: ELECTRON MICROSCOPY (3.27 Å) Cite: A FAN1 point mutation associated with accelerated Huntington's disease progression alters its PCNA-mediated assembly on DNA. Nat Commun, 16, 2025
2LEX	Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA Descriptor: DNA (5'-D(*CP*G*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*C*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*CP*G)-3'), Probable WRKY transcription factor 4, ... Authors: Yamasaki, K, Kigawa, T, Watanabe, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2011-06-24 Release date: 2012-01-18 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural basis for sequence-spscific DNA recognition by an Arabidopsis WRKY transcription factor J.Biol.Chem., 2012
8DQZ	Intermediate state of RFC:PCNA bound to a 3' ss/dsDNA junction Descriptor: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022

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