PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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4DLE	Ternary Structure of the large Fragment of Taq DNA Polymerase: 4-Fluoroproline Variant Descriptor: 1,2-ETHANEDIOL, 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA polymerase I, ... Authors: Holzberger, B, Obeid, S, Welte, W, Diederichs, K, Marx, A. Deposit date: 2012-02-06 Release date: 2012-11-28 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Structural insights into the potential of 4-fluoroproline to modulate biophysical properties of protein Chem Sci, 3, 2012
6GYP	Cryo-EM structure of the CBF3-core-Ndc10-DBD complex of the budding yeast kinetochore Descriptor: ARGININE, ASPARAGINE, Centromere DNA-binding protein complex CBF3 subunit A, ... Authors: Yan, K, Zhang, Z, Yang, J, McLaughlin, S.H, Barford, D. Deposit date: 2018-07-01 Release date: 2018-12-05 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Architecture of the CBF3-centromere complex of the budding yeast kinetochore. Nat. Struct. Mol. Biol., 25, 2018
1RYS	REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION Descriptor: 1,2-ETHANEDIOL, 5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3', 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Ling, H, Boudsocq, F, Plosky, B, Woodgate, R, Yang, W. Deposit date: 2003-12-22 Release date: 2004-02-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Replication of a Cis-Syn Thymine Dimer at Atomic Resolution Nature, 424, 2003
2CHP	Crystal structure of the dodecameric ferritin MrgA from B. subtilis 168 Descriptor: METALLOREGULATION DNA-BINDING STRESS PROTEIN, PHOSPHATE ION Authors: Essen, L.-O, Morbitzer, A. Deposit date: 2006-03-16 Release date: 2007-04-03 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Morphology of Dry Solid-Supported Protein Monolayers Dependent on the Substrate and Protein Surface Properties. Langmuir, 22, 2006
1ODD	OMPR C-TERMINAL DOMAIN (OMPR-C) FROM ESCHERICHIA COLI Descriptor: TRANSCRIPTIONAL REGULATORY PROTEIN OMPR Authors: Kondou, H, Nakagawa, A, Tanaka, I. Deposit date: 1996-10-31 Release date: 1997-05-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site. Nat.Struct.Biol., 4, 1997
3FYH	Recombinase in complex with ADP and metatungstate Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA repair and recombination protein radA, MAGNESIUM ION, ... Authors: Li, Y, He, Y, Luo, Y. Deposit date: 2009-01-22 Release date: 2009-09-01 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of an archaeal Rad51 homologue in complex with a metatungstate inhibitor. Biochemistry, 48, 2009
4NB5	Crystal Structure of a transcriptional regulator Descriptor: 1,3-dihydroxypropan-2-yl octadecanoate, DNA binding protein Authors: Su, C.-C, Radhakrishnan, A, Yu, E.W. Deposit date: 2013-10-22 Release date: 2014-04-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.641 Å) Cite: Crystal Structure of the Transcriptional Regulator Rv0678 of Mycobacterium tuberculosis. J.Biol.Chem., 289, 2014
6LNL	ASFV core shell protein p15 Descriptor: 60 kDa polyprotein Authors: Guo, F, Shi, Y, Peng, G. Deposit date: 2019-12-30 Release date: 2020-12-30 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9286 Å) Cite: The structural basis of African swine fever virus core shell protein p15 binding to DNA. Faseb J., 35, 2021
1S10	Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Ling, H, Boudsocq, F, Woodgate, R, Yang, W. Deposit date: 2004-01-05 Release date: 2004-03-30 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts. Mol.Cell, 13, 2004
1S0N	Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*CP*G)-3', 5'-D(*TP*AP*CP*GP*AP*CP*GP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3', ... Authors: Ling, H, Boudsocq, F, Woodgate, R, Yang, W. Deposit date: 2003-12-31 Release date: 2004-03-30 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts. Mol.Cell, 13, 2004
1S0O	Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift Descriptor: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3', 5'-D(*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', CALCIUM ION, ... Authors: Ling, H, Boudsocq, F, Woodgate, R, Yang, W. Deposit date: 2003-12-31 Release date: 2004-03-30 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts. Mol.Cell, 13, 2004
1NGM	Crystal structure of a yeast Brf1-TBP-DNA ternary complex Descriptor: 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3', Transcription factor IIIB BRF1 subunit, ... Authors: Juo, Z.S, Kassavetis, G.A, Wang, J, Geiduschek, E.P, Sigler, P.B. Deposit date: 2002-12-17 Release date: 2003-03-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Crystal structure of a transcription factor IIIB core interface ternary complex Nature, 422, 2003
8GYK	CryoEM structure of the RAD51_ADP filament Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA repair protein RAD51 homolog 1, MAGNESIUM ION Authors: Miki, Y, Luo, S.C, Ho, M.C. Deposit date: 2022-09-22 Release date: 2023-08-30 Method: ELECTRON MICROSCOPY (3.14 Å) Cite: A RAD51-ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination. Nat Commun, 14, 2023
1Y1W	Complete RNA Polymerase II elongation complex Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... Authors: Cramer, P, Kettenberger, H, Armache, K.-J. Deposit date: 2004-11-19 Release date: 2005-01-04 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (4 Å) Cite: Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS Mol.Cell, 16, 2004
2Q2E	Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei Descriptor: Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A Authors: Corbett, K.D, Benedetti, P, Berger, J.M. Deposit date: 2007-05-28 Release date: 2007-07-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (4 Å) Cite: Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI Nat.Struct.Mol.Biol., 14, 2007
7LBX	Crystal structure of TFAM (mitochondrial transcription factor A) in complex with LSP Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(P*TP*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP*CP*CP*CP*AP*AP*CP*TP*AP*A)-3'), DNA (5'-D(P*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*TP*GP*AP*CP*TP*GP*TP*TP*AP*A)-3'), ... Authors: Choi, W.S, Garcia-Diaz, M. Deposit date: 2021-01-09 Release date: 2022-01-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.7 Å) Cite: A minimal motif for sequence recognition by mitochondrial transcription factor A (TFAM). Nucleic Acids Res., 50, 2022
2Z90	Crystal Structure of the Second Dps from Mycobacterium smegmatis Descriptor: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ... Authors: Roy, S, Saraswathi, R, Chatterji, D, Vijayan, M. Deposit date: 2007-09-13 Release date: 2008-04-22 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural studies on the second Mycobacterium smegmatis Dps: invariant and variable features of structure, assembly and function. J.Mol.Biol., 375, 2008
1ARR	RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR Descriptor: ARC REPRESSOR Authors: Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R. Deposit date: 1993-08-24 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations. J.Mol.Biol., 236, 1994
1ARQ	RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR Descriptor: ARC REPRESSOR Authors: Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R. Deposit date: 1993-08-24 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations. J.Mol.Biol., 236, 1994
6F07	CBF3 Core Complex Descriptor: Centromere DNA-binding protein complex CBF3 subunit B, Suppressor of kinetochore protein 1, ZINC ION Authors: Leber, V, Singleton, M.R. Deposit date: 2017-11-17 Release date: 2017-12-13 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural basis for assembly of the CBF3 kinetochore complex. EMBO J., 37, 2018
7F2N	Crystal structure of SSB from Klebsiella pneumonia. Descriptor: Single-stranded DNA-binding protein Authors: Lin, E.S, Huang, Y.H, Huang, C.Y. Deposit date: 2021-06-11 Release date: 2021-11-10 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Characterization of the Chimeric PriB-SSBc Protein. Int J Mol Sci, 22, 2021
3QEX	RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dGTP Opposite dT Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ... Authors: Xia, S, Konigsberg, W.H, Wang, J. Deposit date: 2011-01-20 Release date: 2012-01-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes To be Published
8VCT	CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (50-MER), MAGNESIUM ION, ... Authors: Shen, Y, Guarne, A. Deposit date: 2023-12-14 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.83 Å) Cite: Assembly of the Tn7 targeting complex by a regulated stepwise process. Mol.Cell, 84, 2024
8OUZ	Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) complex, 2.2 A resolution Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA repair protein RAD51 homolog 2, ... Authors: Greenhough, L.A, Liang, C.C, West, S.C. Deposit date: 2023-04-25 Release date: 2023-06-21 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Structure and function of the RAD51B-RAD51C-RAD51D-XRCC2 tumour suppressor. Nature, 619, 2023
3QET	RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dTTP Opposite dT Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*TP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... Authors: Xia, S, Konigsberg, W.H, Wang, J. Deposit date: 2011-01-20 Release date: 2012-01-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes To be Published

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