PDB: 92212 resultsInfo pagesStatus searchChemie searchBIRD

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6KDH	Antibody 64M-5 Fab including isoAsp in ligand-free form Descriptor: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) Authors: Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N. Deposit date: 2019-07-02 Release date: 2019-12-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.47 Å) Cite: Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab. Sci Rep, 9, 2019
6DSZ	Crystal structure of DDB1 in complex with DET1- and DDB1-associated protein 1 (DDA1) Descriptor: DET1- and DDB1-associated protein 1, DNA damage-binding protein 1 Authors: Shabek, N, Zheng, N. Deposit date: 2018-06-14 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.093 Å) Cite: Structural insights into DDA1 function as a core component of the CRL4-DDB1 ubiquitin ligase. Cell Discov, 4, 2018
2K76	Solution structure of a paralog-specific Mena binder by NMR Descriptor: pGolemi Authors: Link, N.M, Hunke, C, Eichler, J, Bayer, P. Deposit date: 2008-08-03 Release date: 2009-06-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The solution structure of pGolemi, a high affinity Mena EVH1 binding miniature protein, suggests explanations for paralog-specific binding to Ena/VASP homology (EVH) 1 domains. Biol.Chem., 390, 2009
1RQA	Crystallographic Analysis of the Interaction of Nitric Oxide with Quaternary-T Human Hemoglobin. Beta W73E hemoglobin exposed to NO under anaerobic conditions Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, NITRIC OXIDE, ... Authors: Chan, N.-L, Kavanaugh, J.S, Rogers, P.H, Arnone, A. Deposit date: 2003-12-04 Release date: 2005-01-04 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.11 Å) Cite: Crystallographic analysis of the interaction of nitric oxide with quaternary-T human hemoglobin. Biochemistry, 43, 2004
3ERR	Microtubule binding domain from mouse cytoplasmic dynein as a fusion with seryl-tRNA synthetase Descriptor: ADENOSINE MONOPHOSPHATE, fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus Authors: Carter, A.P. Deposit date: 2008-10-03 Release date: 2008-11-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Structure and functional role of dynein's microtubule-binding domain. Science, 322, 2008
6IOV	The ligand binding domain of Mlp37 with arginine Descriptor: ARGININE, Methyl-accepting chemotaxis (MCP) signaling domain protein Authors: Takahashi, Y, Sumita, K, Nishiyama, S, Kawagishi, I, Imada, K. Deposit date: 2018-10-31 Release date: 2019-11-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.351 Å) Cite: Structural basis of the binding affinity of chemoreceptors Mlp24p and Mlp37p for various amino acids. Biochem.Biophys.Res.Commun., 523, 2020
8YE0	Crystal structure of KgpF prenyltransferase Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, LynF/TruF/PatF family peptide O-prenyltransferase, MAGNESIUM ION, ... Authors: Hamada, K, Inoue, S, Goto, Y, Suga, H, Ogata, K, Sengoku, T. Deposit date: 2024-02-21 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (1.94 Å) Cite: De Novo Discovery of Pseudo-Natural Prenylated Macrocyclic Peptide Ligands. Angew.Chem.Int.Ed.Engl., 2024
6KZF	Racemic X-ray Structure of Calcicludine Descriptor: D-calcicludine, Kunitz-type serine protease inhibitor homolog calcicludine Authors: Qu, Q, Gao, S, Liu, L. Deposit date: 2019-09-24 Release date: 2019-11-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Synthesis of Disulfide Surrogate Peptides Incorporating Large-Span Surrogate Bridges Through a Native-Chemical-Ligation-Assisted Diaminodiacid Strategy Angew.Chem.Int.Ed.Engl., 59, 2020
9ERY	Co-crystal strucutre of PD-L1 with low molecular weight inhibitor Descriptor: 5-[[5-[[2-[bis(fluoranyl)methyl]-3-(2,3-dihydro-1,4-benzodioxin-6-yl)phenyl]methoxy]-2-[(2-hydroxyethylamino)methyl]phenoxy]methyl]pyridine-3-carbonitrile, Programmed cell death 1 ligand 1, SULFATE ION Authors: Plewka, J, Magiera-Mularz, K, Zhang, W. Deposit date: 2024-03-25 Release date: 2024-07-24 Last modified: 2024-07-31 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Design, synthesis, and evaluation of antitumor activity of 2-arylmethoxy-4-(2-fluoromethyl-biphenyl-3-ylmethoxy) benzylamine derivatives as PD-1/PD-l1 inhibitors. Eur.J.Med.Chem., 276, 2024
1B3G	OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KIK Descriptor: PROTEIN (LYS-ILE-LYS), PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN), URANYL (VI) ION Authors: Tame, J.R.H, Wilkinson, A.J. Deposit date: 1998-12-14 Release date: 1998-12-16 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystallographic and calorimetric analysis of peptide binding to OppA protein. J.Mol.Biol., 291, 1999
9FMD	Integrative model of the human post-catalytic spliceosome (P-complex) Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ... Authors: Rothe, P, Plaschka, C, Vorlaender, M.K. Deposit date: 2024-06-05 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Mechanism for the initiation of spliceosome disassembly. Nature, 2024
3H2K	Crystal structure of a ligand-bound form of the rice cell wall degrading esterase LipA from Xanthomonas oryzae Descriptor: esterase, octyl beta-D-glucopyranoside Authors: Aparna, G, Chatterjee, A, Sonti, R.V, Sankaranarayanan, R. Deposit date: 2009-04-14 Release date: 2009-08-18 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A Cell Wall-Degrading Esterase of Xanthomonas oryzae Requires a Unique Substrate Recognition Module for Pathogenesis on Rice Plant Cell, 21, 2009
1B5J	OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KQK Descriptor: PROTEIN (LYS-GLN-LYS), PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN), URANIUM ATOM Authors: Tame, J.R.H, Wilkinson, A.J. Deposit date: 1999-01-06 Release date: 1999-01-13 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystallographic and calorimetric analysis of peptide binding to OppA protein. J.Mol.Biol., 291, 1999
1B4Z	OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KDK Descriptor: ACETATE ION, PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN), PROTEIN (PEPTIDE LYS-ASP-LYS), ... Authors: Tame, J.R.H, Sleigh, S.H, Wilkinson, A.J. Deposit date: 1999-01-04 Release date: 1999-01-13 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystallographic and calorimetric analysis of peptide binding to OppA protein. J.Mol.Biol., 291, 1999
3H1D	Structure of the HUWE1 HECT Domain Descriptor: E3 ubiquitin-protein ligase HUWE1, SULFATE ION Authors: Partridge, J.R, Schwartz, T.U. Deposit date: 2009-04-11 Release date: 2009-12-08 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.892 Å) Cite: A structural element within the HUWE1 HECT domain modulates self-ubiquitination and substrate ubiquitination activities. J.Biol.Chem., 285, 2010
4NW4	Crystal structure of a DUF4822 family protein (EF0375) from Enterococcus faecalis V583 at 1.85 A resolution Descriptor: CHLORIDE ION, GLYCEROL, Lipoprotein S-layer protein, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2013-12-05 Release date: 2014-02-19 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of a hypothetical protein (EF0375) from Enterococcus faecalis V583 at 1.85 A resolution To be published
1AA5	VANCOMYCIN Descriptor: ACETIC ACID, CHLORIDE ION, VANCOMYCIN, ... Authors: Loll, P.J, Bevivino, A.E, Korty, B.D, Axelsen, P.H. Deposit date: 1997-01-23 Release date: 1997-08-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (0.89 Å) Cite: Simultaneous Recognition of a Carboxylate-Containing Ligand and an Intramolecular Surrogate Ligand in the Crystal Structure of an Asymmetric Vancomycin Dimer. J.Am.Chem.Soc., 119, 1997
4NCX	Crystal Structure of Prolyl-tRNA synthetase (ProRS, Proline--tRNA ligase) from Plasmodium falciparum 3D7 Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Proline--tRNA ligase Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2013-10-25 Release date: 2014-10-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Biochemical and Structural Characterization of Selective Allosteric Inhibitors of the Plasmodium falciparum Drug Target, Prolyl-tRNA-synthetase. Acs Infect Dis., 3, 2017
1RDJ	MANNOSE-BINDING PROTEIN, SUBTILISIN DIGEST FRAGMENT COMPLEX WITH BETA-METHYL-L-FUCOPYRANOSIDE Descriptor: CALCIUM ION, CHLORIDE ION, MANNOSE-BINDING PROTEIN-C, ... Authors: Ng, K.K.-S, Drickamer, K, Weis, W.I. Deposit date: 1995-09-05 Release date: 1996-03-08 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural analysis of monosaccharide recognition by rat liver mannose-binding protein. J.Biol.Chem., 271, 1996
7S4E	Crystal Structure of ligand ACBi1 in complex with bromodomain of human Smarca2 and pVHL:ElonginC:ElonginB complex Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Elongin-B, ... Authors: MacPherson, D.J, Sherman, W. Deposit date: 2021-09-08 Release date: 2022-10-05 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry. Nat Commun, 13, 2022
8OON	Glutamine synthetase from Methanothermococcus thermolithotrophicus at a resolution of 2.43 A Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glutamine synthetase from Methanothermococcus thermolithotrophicus, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOL	Glutamine synthetase from Methanothermococcus thermolithotrophicus with TbXo4 at a resolution of 1.65 A Descriptor: GLYCEROL, Glutamine synthetase from Methanothermococcus thermolithotrophicus, SULFATE ION, ... Authors: Mueller, M.-C, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
1RDN	MANNOSE-BINDING PROTEIN, SUBTILISIN DIGEST FRAGMENT COMPLEX WITH ALPHA-METHYL-D-N-ACETYLGLUCOSAMINIDE Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ... Authors: Ng, K.K.-S, Drickamer, K, Weis, W.I. Deposit date: 1995-09-05 Release date: 1996-03-08 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural analysis of monosaccharide recognition by rat liver mannose-binding protein. J.Biol.Chem., 271, 1996
4HFZ	Crystal Structure of an MDM2/P53 Peptide Complex Descriptor: Cellular tumor antigen p53, E3 ubiquitin-protein ligase Mdm2, SULFATE ION Authors: Anil, B, Riedinger, C, Endicott, J.A, Noble, M.E.M. Deposit date: 2012-10-05 Release date: 2013-07-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.694 Å) Cite: The structure of an MDM2-Nutlin-3a complex solved by the use of a validated MDM2 surface-entropy reduction mutant. Acta Crystallogr.,Sect.D, 69, 2013
1RDK	MANNOSE-BINDING PROTEIN, SUBTILISIN DIGEST FRAGMENT COMPLEX WITH D-GALACTOSE Descriptor: CALCIUM ION, CHLORIDE ION, MANNOSE-BINDING PROTEIN-C, ... Authors: Ng, K.K.-S, Drickamer, K, Weis, W.I. Deposit date: 1995-09-05 Release date: 1996-03-08 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural analysis of monosaccharide recognition by rat liver mannose-binding protein. J.Biol.Chem., 271, 1996

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